Wall clock time and date at job start Mon Mar 30 2020 03:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.48694 * 2 1 4 4 N 1.46952 * 109.48856 * 120.06908 * 2 1 3 5 5 C 1.46955 * 110.88041 * 179.29455 * 4 2 1 6 6 C 1.53054 * 109.36186 * 300.67415 * 5 4 2 7 7 N 1.46964 * 109.36201 * 58.40126 * 6 5 4 8 8 C 1.46902 * 110.99859 * 176.80934 * 7 6 5 9 9 C 1.52992 * 109.47262 * 313.80463 * 8 7 6 10 10 C 1.53006 * 109.47240 * 179.97438 * 9 8 7 11 11 C 1.50693 * 109.47257 * 180.02562 * 10 9 8 12 12 H 1.07999 * 120.00265 * 359.97438 * 11 10 9 13 13 C 1.37884 * 119.99944 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99912 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 119.99749 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.47041 * 90.00583 * 15 13 11 17 17 H 1.48501 * 109.47102 * 210.00262 * 15 13 11 18 18 H 1.48493 * 109.47540 * 330.00221 * 15 13 11 19 19 C 1.46955 * 110.88147 * 300.68188 * 7 6 5 20 20 H 1.09007 * 109.48786 * 299.35318 * 19 7 6 21 21 C 1.52997 * 109.50522 * 179.30042 * 19 7 6 22 22 H 1.09001 * 109.47002 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.46955 * 300.04326 * 1 2 3 24 24 H 1.09000 * 109.47050 * 60.04155 * 1 2 3 25 25 H 1.00900 * 110.99926 * 303.15546 * 4 2 1 26 26 H 1.08995 * 109.49009 * 180.71085 * 5 4 2 27 27 H 1.08999 * 109.51048 * 60.65207 * 5 4 2 28 28 H 1.09003 * 109.49235 * 298.43688 * 6 5 4 29 29 H 1.08992 * 109.49072 * 178.37114 * 6 5 4 30 30 H 1.09002 * 109.46576 * 73.80314 * 8 7 6 31 31 H 1.09001 * 109.47006 * 193.79749 * 8 7 6 32 32 H 1.09002 * 109.47204 * 299.99467 * 9 8 7 33 33 H 1.09001 * 109.47693 * 59.99707 * 9 8 7 34 34 H 1.09002 * 109.46619 * 299.99865 * 10 9 8 35 35 H 1.09001 * 109.46984 * 59.99313 * 10 9 8 36 36 H 0.97001 * 120.00095 * 179.97438 * 14 13 11 37 37 H 1.08999 * 109.47086 * 300.09825 * 21 19 7 38 38 H 1.09003 * 109.47399 * 60.09964 * 21 19 7 39 39 H 1.09004 * 109.46800 * 180.09571 * 21 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 7 2.0203 -0.6941 1.1989 5 6 3.4893 -0.7266 1.2213 6 6 4.0000 -1.4490 -0.0276 7 7 3.5097 -0.7549 -1.2266 8 6 4.0412 -1.3744 -2.4479 9 6 5.5428 -1.6178 -2.2844 10 6 6.0963 -2.2637 -3.5562 11 6 7.5752 -2.5040 -3.3949 12 1 8.0709 -2.2237 -2.4773 13 6 8.2957 -3.0808 -4.4193 14 7 9.5864 -3.2900 -4.2787 15 14 7.4384 -3.5649 -6.0067 16 1 7.4747 -2.4242 -6.9568 17 1 8.1323 -4.7321 -6.6080 18 1 6.0267 -3.9235 -5.7176 19 6 2.0407 -0.7222 -1.2490 20 1 1.6545 -1.7415 -1.2631 21 6 1.5652 0.0211 -2.4988 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5145 0.8895 24 1 -0.3633 0.5132 -0.8904 25 1 1.6553 -0.2685 2.0378 26 1 3.8278 -1.2565 2.1117 27 1 3.8759 0.2924 1.2356 28 1 3.6361 -2.4764 -0.0279 29 1 5.0900 -1.4490 -0.0276 30 1 3.5361 -2.3244 -2.6228 31 1 3.8708 -0.7109 -3.2958 32 1 6.0479 -0.6678 -2.1096 33 1 5.7132 -2.2813 -1.4366 34 1 5.5911 -3.2137 -3.7306 35 1 5.9259 -1.6005 -4.4043 36 1 10.0933 -3.6961 -4.9992 37 1 1.9522 1.0400 -2.4848 38 1 1.9289 -0.4935 -3.3882 39 1 0.4755 0.0465 -2.5139 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379473105.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:52 Heat of formation + Delta-G solvation = -28.980823 kcal Electronic energy + Delta-G solvation = -16232.121527 eV Core-core repulsion = 13787.014280 eV Total energy + Delta-G solvation = -2445.107247 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.61934 -36.99774 -35.21092 -34.36071 -33.21858 -29.68919 -28.87894 -27.68123 -25.27713 -23.13010 -22.94473 -21.27793 -20.51381 -18.88852 -17.32388 -16.65784 -16.38507 -16.19597 -16.07737 -15.48992 -15.00439 -14.81989 -14.58394 -13.82953 -13.75637 -13.32115 -13.25109 -13.11326 -12.72983 -12.67763 -12.51963 -12.38424 -11.99441 -11.83580 -11.74947 -11.61135 -11.43301 -11.25792 -11.12414 -10.76810 -9.49781 -9.24575 -8.30318 -6.34664 1.35155 1.37124 1.49314 2.35715 2.87990 3.04911 3.19644 3.77878 3.98202 4.03667 4.19402 4.27128 4.34281 4.35742 4.44915 4.56139 4.59860 4.65777 4.77447 4.81378 4.87724 4.92765 4.97470 5.02135 5.03880 5.08302 5.16373 5.34032 5.40441 5.47294 5.56692 5.64369 5.95220 6.05856 6.22708 6.28562 6.51587 6.73097 7.29972 8.86712 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.046139 B = 0.005522 C = 0.005050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.720792 B = 5069.463714 C = 5543.451616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.092 3.908 3 H 0.040 0.960 4 N -0.693 5.693 5 C 0.066 3.934 6 C 0.048 3.952 7 N -0.542 5.542 8 C 0.065 3.935 9 C -0.094 4.094 10 C -0.009 4.009 11 C -0.533 4.533 12 H 0.030 0.970 13 C 0.003 3.997 14 N -0.952 5.952 15 Si 0.953 3.047 16 H -0.264 1.264 17 H -0.283 1.283 18 H -0.248 1.248 19 C 0.083 3.917 20 H 0.032 0.968 21 C -0.145 4.145 22 H 0.057 0.943 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.353 0.647 26 H 0.092 0.908 27 H 0.036 0.964 28 H 0.027 0.973 29 H 0.076 0.924 30 H 0.026 0.974 31 H 0.080 0.920 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.017 0.983 35 H 0.020 0.980 36 H 0.267 0.733 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.658 7.005 7.761 23.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.019 4.019 3 H 0.058 0.942 4 N -0.326 5.326 5 C -0.064 4.064 6 C -0.080 4.080 7 N -0.267 5.267 8 C -0.062 4.062 9 C -0.132 4.132 10 C -0.047 4.047 11 C -0.571 4.571 12 H 0.048 0.952 13 C -0.193 4.193 14 N -0.593 5.593 15 Si 0.776 3.224 16 H -0.189 1.189 17 H -0.209 1.209 18 H -0.171 1.171 19 C -0.025 4.025 20 H 0.050 0.950 21 C -0.202 4.202 22 H 0.076 0.924 23 H 0.087 0.913 24 H 0.094 0.906 25 H 0.173 0.827 26 H 0.110 0.890 27 H 0.054 0.946 28 H 0.045 0.955 29 H 0.094 0.906 30 H 0.045 0.955 31 H 0.098 0.902 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.035 0.965 35 H 0.038 0.962 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -20.409 6.804 7.433 22.761 hybrid contribution 0.578 -0.369 -0.420 0.804 sum -19.831 6.435 7.013 21.997 Atomic orbital electron populations 1.21823 0.92236 1.02584 1.03055 1.21544 0.96228 0.94939 0.89141 0.94185 1.60536 1.08137 1.58562 1.05387 1.21928 0.87930 0.99170 0.97336 1.22263 1.00133 0.95484 0.90133 1.62292 1.08747 1.53602 1.02069 1.22098 0.94383 0.96892 0.92826 1.21428 0.94005 0.99709 0.98011 1.19482 0.93916 0.95905 0.95372 1.21484 0.94105 1.40044 1.01500 0.95205 1.26048 0.95356 0.95138 1.02799 1.70074 1.08675 1.45666 1.34884 0.85614 0.79722 0.78358 0.78694 1.18929 1.20861 1.17136 1.21795 0.86433 0.98054 0.96232 0.94991 1.21920 1.01983 1.00577 0.95766 0.92404 0.91263 0.90574 0.82727 0.88979 0.94607 0.95492 0.90586 0.95534 0.90177 0.93139 0.93220 0.96479 0.96156 0.92460 0.92019 0.92879 0.89788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.15 71.98 0.66 -1.39 16 2 C 0.09 1.86 2.70 44.92 0.12 1.98 16 3 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 4 N -0.69 -14.21 6.55 -491.14 -3.21 -17.43 16 5 C 0.07 1.52 6.72 86.31 0.58 2.10 16 6 C 0.05 1.41 4.93 86.31 0.43 1.83 16 7 N -0.54 -16.15 4.68 -870.49 -4.07 -20.22 16 8 C 0.07 2.19 4.46 86.30 0.38 2.58 16 9 C -0.09 -3.84 4.42 30.59 0.14 -3.71 16 10 C -0.01 -0.43 4.04 29.85 0.12 -0.31 16 11 C -0.53 -31.76 9.66 25.60 0.25 -31.51 16 12 H 0.03 1.95 7.99 -2.91 -0.02 1.93 16 13 C 0.00 0.19 5.47 84.66 0.46 0.65 16 14 N -0.95 -60.97 13.96 21.45 0.30 -60.67 16 15 Si 0.95 45.08 27.47 68.60 1.88 46.97 16 16 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 17 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 18 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 19 C 0.08 2.05 2.03 44.92 0.09 2.14 16 20 H 0.03 0.88 8.14 -2.38 -0.02 0.86 16 21 C -0.14 -3.01 8.55 71.98 0.62 -2.39 16 22 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 24 H 0.08 0.95 6.47 -2.39 -0.02 0.94 16 25 H 0.35 5.55 8.83 -89.69 -0.79 4.76 16 26 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.08 2.43 5.99 -2.39 -0.01 2.41 16 30 H 0.03 0.89 8.08 -2.39 -0.02 0.87 16 31 H 0.08 2.57 6.86 -2.39 -0.02 2.55 16 32 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.05 2.07 6.26 -2.39 -0.01 2.06 16 34 H 0.02 0.81 7.20 -2.39 -0.02 0.79 16 35 H 0.02 0.94 7.57 -2.39 -0.02 0.92 16 36 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 37 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.05 1.19 6.60 -2.39 -0.02 1.17 16 39 H 0.08 1.33 6.47 -2.38 -0.02 1.31 16 Total: -1.00 -67.04 295.44 -1.10 -68.14 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: 0.16 Total: 11.24 kcal Atomic # 6 Polarization: -31.87 SS G_CDS: 3.84 Total: -28.03 kcal Atomic # 7 Polarization: -91.33 SS G_CDS: -6.98 Total: -98.32 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.88 Total: 46.97 kcal Total: -67.04 -1.10 -68.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379473105.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.160 kcal (2) G-P(sol) polarization free energy of solvation -67.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds