Wall clock time and date at job start Mon Mar 30 2020 03:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.48659 * 2 1 4 4 N 1.46953 * 109.49152 * 239.93566 * 2 1 3 5 5 C 1.46957 * 110.88362 * 180.70791 * 4 2 1 6 6 C 1.53052 * 109.35972 * 59.32020 * 5 4 2 7 7 N 1.46953 * 109.36562 * 301.60048 * 6 5 4 8 8 C 1.46907 * 110.99914 * 183.19030 * 7 6 5 9 9 C 1.52996 * 109.47007 * 46.19999 * 8 7 6 10 10 C 1.52998 * 109.46929 * 180.02562 * 9 8 7 11 11 C 1.50706 * 109.47348 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99758 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00102 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00217 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99766 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47483 * 269.99808 * 15 13 11 17 17 H 1.48499 * 109.47134 * 30.00322 * 15 13 11 18 18 H 1.48507 * 109.46904 * 150.00145 * 15 13 11 19 19 C 1.46957 * 110.88362 * 59.32370 * 7 6 5 20 20 H 1.08999 * 109.48687 * 60.64071 * 19 7 6 21 21 C 1.52991 * 109.48930 * 180.69143 * 19 7 6 22 22 H 1.09000 * 109.47254 * 299.95353 * 1 2 3 23 23 H 1.08999 * 109.46973 * 59.96106 * 1 2 3 24 24 H 1.09005 * 109.46469 * 179.97438 * 1 2 3 25 25 H 1.00901 * 111.00552 * 304.58105 * 4 2 1 26 26 H 1.08998 * 109.49426 * 179.28959 * 5 4 2 27 27 H 1.08999 * 109.48687 * 299.35929 * 5 4 2 28 28 H 1.09005 * 109.48822 * 181.62999 * 6 5 4 29 29 H 1.09002 * 109.48952 * 61.57105 * 6 5 4 30 30 H 1.09000 * 109.46801 * 286.19875 * 8 7 6 31 31 H 1.09002 * 109.46963 * 166.19789 * 8 7 6 32 32 H 1.09000 * 109.47441 * 60.00268 * 9 8 7 33 33 H 1.09002 * 109.47087 * 299.99714 * 9 8 7 34 34 H 1.09001 * 109.47671 * 60.00109 * 10 9 8 35 35 H 1.09006 * 109.47297 * 299.99829 * 10 9 8 36 36 H 0.97001 * 119.99646 * 359.97438 * 14 13 11 37 37 H 1.09000 * 109.47379 * 60.00018 * 21 19 7 38 38 H 1.09004 * 109.47041 * 179.97438 * 21 19 7 39 39 H 1.08998 * 109.47580 * 299.99532 * 21 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 7 2.0204 -0.6940 -1.1989 5 6 3.4894 -0.7266 -1.2214 6 6 4.0000 -1.4489 0.0276 7 7 3.5097 -0.7549 1.2266 8 6 4.0412 -1.3746 2.4479 9 6 5.5428 -1.6179 2.2844 10 6 6.0962 -2.2638 3.5561 11 6 7.5752 -2.5041 3.3949 12 1 8.0708 -2.2244 2.4769 13 6 8.2956 -3.0809 4.4192 14 7 7.6921 -3.4219 5.5368 15 14 10.1287 -3.3793 4.2190 16 1 10.3502 -4.7276 3.6373 17 1 10.7020 -2.3499 3.3153 18 1 10.7913 -3.2977 5.5456 19 6 2.0406 -0.7223 1.2490 20 1 1.6545 -1.7415 1.2630 21 6 1.5656 0.0208 2.4991 22 1 -0.3634 0.5131 0.8904 23 1 -0.3633 0.5144 -0.8896 24 1 -0.3632 -1.0278 -0.0005 25 1 1.6371 -1.6254 -1.2599 26 1 3.8279 -1.2563 -2.1118 27 1 3.8755 0.2926 -1.2354 28 1 5.0900 -1.4489 0.0276 29 1 3.6361 -2.4764 0.0278 30 1 3.5361 -2.3246 2.6227 31 1 3.8708 -0.7110 3.2957 32 1 6.0479 -0.6679 2.1096 33 1 5.7132 -2.2815 1.4366 34 1 5.5911 -3.2139 3.7306 35 1 5.9258 -1.6007 4.4043 36 1 6.7401 -3.2673 5.6406 37 1 1.9512 1.0402 2.4843 38 1 0.4759 0.0452 2.5152 39 1 1.9309 -0.4930 3.3882 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379473108.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:56 Heat of formation + Delta-G solvation = -15.753476 kcal Electronic energy + Delta-G solvation = -16238.494231 eV Core-core repulsion = 13793.960565 eV Total energy + Delta-G solvation = -2444.533667 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.75039 -35.66554 -33.65461 -33.38290 -31.04874 -28.39077 -27.28468 -25.95221 -23.65229 -22.11809 -21.83418 -20.22449 -19.77329 -16.79105 -15.74949 -15.54184 -15.35987 -15.14000 -14.23817 -13.84728 -13.71172 -13.37874 -12.99528 -12.52246 -12.41886 -12.23920 -11.89498 -11.76051 -11.58025 -11.28732 -11.17108 -11.01211 -10.89254 -10.71723 -10.37395 -10.11519 -9.83046 -9.68076 -8.58220 -8.46877 -8.31206 -8.08073 -6.35442 -4.04139 3.43673 3.47709 3.63472 3.90537 4.15442 4.55504 4.72701 4.97490 5.07752 5.12207 5.24775 5.33955 5.36757 5.41907 5.44670 5.58507 5.67675 5.74060 5.77199 5.84196 5.91038 5.93445 6.04363 6.11220 6.16800 6.27426 6.53709 6.62855 6.87685 6.92491 7.23064 7.29365 7.31122 7.41097 7.54745 8.23441 8.47768 8.89746 9.68348 11.05274 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.050643 B = 0.005141 C = 0.004763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.758513 B = 5445.494753 C = 5877.239052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.090 3.910 3 H 0.088 0.912 4 N -0.684 5.684 5 C 0.059 3.941 6 C 0.011 3.989 7 N -0.531 5.531 8 C 0.055 3.945 9 C -0.104 4.104 10 C 0.009 3.991 11 C -0.600 4.600 12 H 0.048 0.952 13 C 0.013 3.987 14 N -0.915 5.915 15 Si 1.072 2.928 16 H -0.288 1.288 17 H -0.288 1.288 18 H -0.284 1.284 19 C 0.048 3.952 20 H 0.034 0.966 21 C -0.145 4.145 22 H 0.064 0.936 23 H 0.063 0.937 24 H 0.051 0.949 25 H 0.334 0.666 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.028 0.972 30 H 0.025 0.975 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.003 0.997 35 H 0.007 0.993 36 H 0.268 0.732 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.206 5.758 -10.996 18.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.020 4.020 3 H 0.106 0.894 4 N -0.312 5.312 5 C -0.070 4.070 6 C -0.118 4.118 7 N -0.256 5.256 8 C -0.072 4.072 9 C -0.142 4.142 10 C -0.028 4.028 11 C -0.638 4.638 12 H 0.067 0.933 13 C -0.190 4.190 14 N -0.551 5.551 15 Si 0.900 3.100 16 H -0.215 1.215 17 H -0.215 1.215 18 H -0.210 1.210 19 C -0.062 4.062 20 H 0.052 0.948 21 C -0.203 4.203 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.070 0.930 25 H 0.151 0.849 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.111 0.889 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.022 0.978 35 H 0.025 0.975 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.744 6.218 -10.672 17.043 hybrid contribution -1.421 -1.046 0.056 1.765 sum -13.165 5.172 -10.616 17.685 Atomic orbital electron populations 1.21861 0.94313 1.01890 1.02282 1.21660 0.94677 0.98912 0.86750 0.89384 1.60875 1.07963 1.23016 1.39345 1.22115 0.87179 1.01692 0.96046 1.22941 1.02405 0.95226 0.91232 1.62244 1.06749 1.53947 1.02633 1.22325 0.97007 0.96376 0.91456 1.21651 0.91668 1.00515 1.00360 1.19198 0.96583 0.94681 0.92370 1.22073 0.93702 1.44540 1.03523 0.93332 1.25865 1.06519 0.93839 0.92778 1.70755 1.12728 1.45317 1.26318 0.83511 0.74471 0.76262 0.75759 1.21499 1.21453 1.20971 1.22390 0.88679 0.98005 0.97115 0.94844 1.21878 1.00392 1.01215 0.96859 0.91684 0.91761 0.92993 0.84857 0.90409 0.90088 0.88931 0.95402 0.95721 0.90882 0.92381 0.93113 0.97829 0.97475 0.92157 0.91716 0.92155 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.14 37.16 0.34 -0.97 16 2 C 0.09 1.02 2.71 -67.66 -0.18 0.84 16 3 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 4 N -0.68 -7.74 6.56 -106.59 -0.70 -8.44 16 5 C 0.06 0.71 6.72 -3.77 -0.03 0.69 16 6 C 0.01 0.17 4.92 -3.77 -0.02 0.15 16 7 N -0.53 -8.20 4.67 -226.49 -1.06 -9.26 16 8 C 0.06 1.00 4.46 -3.82 -0.02 0.98 16 9 C -0.10 -2.22 4.42 -26.73 -0.12 -2.34 16 10 C 0.01 0.24 4.28 -27.88 -0.12 0.12 16 11 C -0.60 -17.52 9.11 -34.44 -0.31 -17.84 16 12 H 0.05 1.40 7.74 -52.48 -0.41 0.99 16 13 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 14 N -0.91 -28.58 13.65 55.43 0.76 -27.83 16 15 Si 1.07 25.77 29.90 -169.99 -5.08 20.69 16 16 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 C 0.05 0.63 2.02 -67.66 -0.14 0.49 16 20 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 21 C -0.15 -1.73 8.55 37.15 0.32 -1.42 16 22 H 0.06 0.53 6.48 -51.93 -0.34 0.19 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.33 3.53 8.80 -39.29 -0.35 3.18 16 26 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.09 1.44 5.99 -51.93 -0.31 1.13 16 29 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.02 0.46 8.08 -51.93 -0.42 0.04 16 31 H 0.07 1.32 6.86 -51.93 -0.36 0.97 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 33 H 0.05 1.07 6.26 -51.93 -0.33 0.74 16 34 H 0.00 0.10 8.01 -51.93 -0.42 -0.32 16 35 H 0.01 0.19 8.01 -51.93 -0.42 -0.22 16 36 H 0.27 8.35 7.22 -40.82 -0.29 8.06 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.59 6.48 -51.93 -0.34 0.25 16 39 H 0.06 0.76 6.59 -51.93 -0.34 0.42 16 LS Contribution 297.69 15.07 4.49 4.49 Total: -1.00 -30.82 297.69 -8.88 -39.69 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -6.91 Total: -0.34 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: -0.37 Total: -19.00 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: -1.00 Total: -45.53 kcal Atomic # 14 Polarization: 25.77 SS G_CDS: -5.08 Total: 20.69 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.82 -8.88 -39.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379473108.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.941 kcal (2) G-P(sol) polarization free energy of solvation -30.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds