Wall clock time and date at job start Mon Mar 30 2020 03:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.48659 * 2 1 4 4 N 1.46953 * 109.49152 * 239.93566 * 2 1 3 5 5 C 1.46957 * 110.88362 * 180.70791 * 4 2 1 6 6 C 1.53052 * 109.35972 * 59.32020 * 5 4 2 7 7 N 1.46953 * 109.36562 * 301.60048 * 6 5 4 8 8 C 1.46907 * 110.99914 * 183.19030 * 7 6 5 9 9 C 1.52996 * 109.47007 * 46.19999 * 8 7 6 10 10 C 1.52998 * 109.46929 * 180.02562 * 9 8 7 11 11 C 1.50706 * 109.47348 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99758 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00102 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00217 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99766 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47483 * 269.99808 * 15 13 11 17 17 H 1.48499 * 109.47134 * 30.00322 * 15 13 11 18 18 H 1.48507 * 109.46904 * 150.00145 * 15 13 11 19 19 C 1.46957 * 110.88362 * 59.32370 * 7 6 5 20 20 H 1.08999 * 109.48687 * 60.64071 * 19 7 6 21 21 C 1.52991 * 109.48930 * 180.69143 * 19 7 6 22 22 H 1.09000 * 109.47254 * 299.95353 * 1 2 3 23 23 H 1.08999 * 109.46973 * 59.96106 * 1 2 3 24 24 H 1.09005 * 109.46469 * 179.97438 * 1 2 3 25 25 H 1.00901 * 111.00552 * 304.58105 * 4 2 1 26 26 H 1.08998 * 109.49426 * 179.28959 * 5 4 2 27 27 H 1.08999 * 109.48687 * 299.35929 * 5 4 2 28 28 H 1.09005 * 109.48822 * 181.62999 * 6 5 4 29 29 H 1.09002 * 109.48952 * 61.57105 * 6 5 4 30 30 H 1.09000 * 109.46801 * 286.19875 * 8 7 6 31 31 H 1.09002 * 109.46963 * 166.19789 * 8 7 6 32 32 H 1.09000 * 109.47441 * 60.00268 * 9 8 7 33 33 H 1.09002 * 109.47087 * 299.99714 * 9 8 7 34 34 H 1.09001 * 109.47671 * 60.00109 * 10 9 8 35 35 H 1.09006 * 109.47297 * 299.99829 * 10 9 8 36 36 H 0.97001 * 119.99646 * 359.97438 * 14 13 11 37 37 H 1.09000 * 109.47379 * 60.00018 * 21 19 7 38 38 H 1.09004 * 109.47041 * 179.97438 * 21 19 7 39 39 H 1.08998 * 109.47580 * 299.99532 * 21 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 7 2.0204 -0.6940 -1.1989 5 6 3.4894 -0.7266 -1.2214 6 6 4.0000 -1.4489 0.0276 7 7 3.5097 -0.7549 1.2266 8 6 4.0412 -1.3746 2.4479 9 6 5.5428 -1.6179 2.2844 10 6 6.0962 -2.2638 3.5561 11 6 7.5752 -2.5041 3.3949 12 1 8.0708 -2.2244 2.4769 13 6 8.2956 -3.0809 4.4192 14 7 7.6921 -3.4219 5.5368 15 14 10.1287 -3.3793 4.2190 16 1 10.3502 -4.7276 3.6373 17 1 10.7020 -2.3499 3.3153 18 1 10.7913 -3.2977 5.5456 19 6 2.0406 -0.7223 1.2490 20 1 1.6545 -1.7415 1.2630 21 6 1.5656 0.0208 2.4991 22 1 -0.3634 0.5131 0.8904 23 1 -0.3633 0.5144 -0.8896 24 1 -0.3632 -1.0278 -0.0005 25 1 1.6371 -1.6254 -1.2599 26 1 3.8279 -1.2563 -2.1118 27 1 3.8755 0.2926 -1.2354 28 1 5.0900 -1.4489 0.0276 29 1 3.6361 -2.4764 0.0278 30 1 3.5361 -2.3246 2.6227 31 1 3.8708 -0.7110 3.2957 32 1 6.0479 -0.6679 2.1096 33 1 5.7132 -2.2815 1.4366 34 1 5.5911 -3.2139 3.7306 35 1 5.9258 -1.6007 4.4043 36 1 6.7401 -3.2673 5.6406 37 1 1.9512 1.0402 2.4843 38 1 0.4759 0.0452 2.5152 39 1 1.9309 -0.4930 3.3882 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379473108.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:56 Heat of formation + Delta-G solvation = -37.490129 kcal Electronic energy + Delta-G solvation = -16239.436803 eV Core-core repulsion = 13793.960565 eV Total energy + Delta-G solvation = -2445.476239 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.85748 -37.15263 -35.49259 -34.43219 -32.83338 -29.45500 -28.53942 -27.47711 -25.33516 -23.53110 -23.13589 -21.44978 -21.13826 -18.97421 -16.86840 -16.75038 -16.50540 -16.31920 -15.68893 -15.56486 -15.23438 -14.85188 -14.39176 -13.83044 -13.67701 -13.43163 -13.26575 -13.01676 -12.73615 -12.67169 -12.53482 -12.32485 -12.14490 -11.97331 -11.90118 -11.76287 -11.72647 -11.41014 -10.71221 -10.58140 -9.58335 -9.25372 -8.73379 -6.43959 1.50259 1.59862 1.77973 2.53670 2.72596 3.12049 3.23486 3.73959 3.88063 3.97087 4.05793 4.14278 4.17465 4.30509 4.40563 4.48029 4.48483 4.55948 4.63442 4.74418 4.78709 4.85362 4.91861 4.96667 4.97864 5.06798 5.09459 5.25336 5.32993 5.37630 5.44052 5.89520 5.91349 5.99215 6.11262 6.15707 6.40162 6.53225 7.38595 8.67437 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.050643 B = 0.005141 C = 0.004763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.758513 B = 5445.494753 C = 5877.239052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.095 3.905 3 H 0.079 0.921 4 N -0.681 5.681 5 C 0.068 3.932 6 C 0.011 3.989 7 N -0.536 5.536 8 C 0.069 3.931 9 C -0.088 4.088 10 C 0.011 3.989 11 C -0.619 4.619 12 H 0.050 0.950 13 C -0.040 4.040 14 N -0.938 5.938 15 Si 1.122 2.878 16 H -0.271 1.271 17 H -0.268 1.268 18 H -0.281 1.281 19 C 0.047 3.953 20 H 0.029 0.971 21 C -0.143 4.143 22 H 0.075 0.925 23 H 0.070 0.930 24 H 0.056 0.944 25 H 0.341 0.659 26 H 0.096 0.904 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.023 0.977 30 H 0.017 0.983 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.053 0.947 34 H -0.015 1.015 35 H -0.011 1.011 36 H 0.254 0.746 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.616 6.177 -12.482 19.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.016 4.016 3 H 0.098 0.902 4 N -0.309 5.309 5 C -0.062 4.062 6 C -0.119 4.119 7 N -0.261 5.261 8 C -0.058 4.058 9 C -0.126 4.126 10 C -0.027 4.027 11 C -0.657 4.657 12 H 0.069 0.931 13 C -0.237 4.237 14 N -0.575 5.575 15 Si 0.942 3.058 16 H -0.196 1.196 17 H -0.193 1.193 18 H -0.206 1.206 19 C -0.063 4.063 20 H 0.047 0.953 21 C -0.201 4.201 22 H 0.094 0.906 23 H 0.089 0.911 24 H 0.075 0.925 25 H 0.159 0.841 26 H 0.115 0.885 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.042 0.958 30 H 0.035 0.965 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.003 0.997 35 H 0.007 0.993 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.104 0.896 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -12.191 6.646 -12.180 18.470 hybrid contribution -1.347 -1.165 0.508 1.853 sum -13.538 5.480 -11.672 18.696 Atomic orbital electron populations 1.21821 0.92188 1.02508 1.03171 1.21663 0.96259 0.98007 0.85632 0.90235 1.60890 1.07384 1.23493 1.39152 1.22068 0.87594 1.01219 0.95321 1.22989 1.01550 0.95385 0.91972 1.62259 1.08626 1.53465 1.01742 1.22030 0.94666 0.96181 0.92971 1.21413 0.93832 0.99620 0.97727 1.19138 0.95709 0.93739 0.94118 1.22501 0.95174 1.44374 1.03670 0.93143 1.27516 1.11099 0.92984 0.92082 1.70896 1.12083 1.46973 1.27544 0.82887 0.68992 0.77533 0.76360 1.19649 1.19311 1.20644 1.22530 0.86793 0.98199 0.98737 0.95335 1.21878 1.02044 1.00595 0.95581 0.90620 0.91086 0.92487 0.84097 0.88534 0.90600 0.90470 0.95838 0.96487 0.91182 0.92892 0.92845 0.99689 0.99309 0.93641 0.91897 0.89577 0.93904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.14 71.98 0.66 -1.45 16 2 C 0.09 1.94 2.71 44.92 0.12 2.06 16 3 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 4 N -0.68 -13.90 6.56 -491.13 -3.22 -17.12 16 5 C 0.07 1.51 6.72 86.31 0.58 2.09 16 6 C 0.01 0.30 4.92 86.31 0.42 0.72 16 7 N -0.54 -16.26 4.67 -870.49 -4.07 -20.33 16 8 C 0.07 2.52 4.46 86.30 0.38 2.91 16 9 C -0.09 -3.82 4.42 30.59 0.14 -3.69 16 10 C 0.01 0.57 4.28 29.85 0.13 0.70 16 11 C -0.62 -36.59 9.11 25.60 0.23 -36.35 16 12 H 0.05 2.90 7.74 -2.91 -0.02 2.87 16 13 C -0.04 -2.36 5.46 84.65 0.46 -1.90 16 14 N -0.94 -59.57 13.65 21.45 0.29 -59.27 16 15 Si 1.12 51.18 29.90 68.60 2.05 53.23 16 16 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 17 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 18 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 19 C 0.05 1.16 2.02 44.92 0.09 1.25 16 20 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 21 C -0.14 -3.22 8.55 71.98 0.62 -2.60 16 22 H 0.07 0.99 6.48 -2.39 -0.02 0.98 16 23 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 25 H 0.34 6.37 8.80 -89.69 -0.79 5.59 16 26 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.08 2.38 5.99 -2.38 -0.01 2.37 16 29 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.02 0.64 8.08 -2.39 -0.02 0.62 16 31 H 0.07 2.58 6.86 -2.39 -0.02 2.57 16 32 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.05 2.27 6.26 -2.39 -0.01 2.26 16 34 H -0.02 -0.87 8.01 -2.39 -0.02 -0.89 16 35 H -0.01 -0.65 8.01 -2.38 -0.02 -0.67 16 36 H 0.25 16.39 7.22 -92.71 -0.67 15.72 16 37 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.09 1.47 6.48 -2.38 -0.02 1.46 16 39 H 0.04 1.09 6.59 -2.39 -0.02 1.07 16 Total: -1.00 -66.13 297.69 -0.80 -66.93 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: 0.32 Total: 12.82 kcal Atomic # 6 Polarization: -40.09 SS G_CDS: 3.83 Total: -36.26 kcal Atomic # 7 Polarization: -89.73 SS G_CDS: -7.00 Total: -96.73 kcal Atomic # 14 Polarization: 51.18 SS G_CDS: 2.05 Total: 53.23 kcal Total: -66.13 -0.80 -66.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379473108.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.442 kcal (2) G-P(sol) polarization free energy of solvation -66.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds