Wall clock time and date at job start Mon Mar 30 2020 03:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47315 * 2 1 4 4 C 1.50699 * 109.47030 * 119.99958 * 2 1 3 5 5 H 1.07999 * 120.00803 * 119.99828 * 4 2 1 6 6 C 1.37881 * 119.99889 * 299.99649 * 4 2 1 7 7 N 1.31520 * 120.00186 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00030 * 0.02562 * 6 4 2 9 9 H 1.48506 * 109.47297 * 89.99863 * 8 6 4 10 10 H 1.48503 * 109.47261 * 330.00044 * 8 6 4 11 11 H 1.48500 * 109.47454 * 210.00037 * 8 6 4 12 12 N 1.46900 * 109.46971 * 239.99321 * 2 1 3 13 13 C 1.46900 * 110.99584 * 85.00098 * 12 2 1 14 14 C 1.53009 * 109.46977 * 179.97438 * 13 12 2 15 15 N 1.46900 * 109.46977 * 180.02562 * 14 13 12 16 16 C 1.47442 * 110.99798 * 69.87575 * 15 14 13 17 17 C 1.54317 * 107.23125 * 123.25309 * 16 15 14 18 18 C 1.55142 * 103.01986 * 22.28497 * 17 16 15 19 19 H 1.09003 * 110.99243 * 82.43605 * 18 17 16 20 20 C 1.53003 * 110.99226 * 206.21464 * 18 17 16 21 21 C 1.47847 * 110.99601 * 190.71615 * 15 14 13 22 22 H 1.09002 * 109.47215 * 60.00272 * 1 2 3 23 23 H 1.08995 * 109.47372 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47140 * 300.00483 * 1 2 3 25 25 H 0.96998 * 120.00124 * 180.02562 * 7 6 4 26 26 H 1.00897 * 110.99908 * 321.05014 * 12 2 1 27 27 H 1.08998 * 109.47526 * 299.99652 * 13 12 2 28 28 H 1.08998 * 109.47166 * 60.00599 * 13 12 2 29 29 H 1.08998 * 109.46903 * 300.00271 * 14 13 12 30 30 H 1.08998 * 109.46489 * 60.00423 * 14 13 12 31 31 H 1.08991 * 109.88932 * 242.66215 * 16 15 14 32 32 H 1.09009 * 109.89138 * 3.85316 * 16 15 14 33 33 H 1.09001 * 110.70815 * 140.66595 * 17 16 15 34 34 H 1.08997 * 110.70944 * 263.90086 * 17 16 15 35 35 H 1.09001 * 109.47093 * 58.54716 * 20 18 17 36 36 H 1.09002 * 109.47015 * 178.54757 * 20 18 17 37 37 H 1.08994 * 109.47132 * 298.54614 * 20 18 17 38 38 H 1.08993 * 110.37716 * 332.46805 * 21 15 14 39 39 H 1.09005 * 110.36741 * 94.81368 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4827 7 7 2.1380 -0.8589 3.5566 8 14 0.6248 1.2792 2.6541 9 1 -0.8028 0.8728 2.6998 10 1 0.8471 2.1766 1.4919 11 1 0.9759 1.9953 3.9067 12 7 2.0196 -0.6926 -1.1994 13 6 2.0824 0.2224 -2.3469 14 6 2.5962 -0.5332 -3.5742 15 7 2.6595 0.3820 -4.7215 16 6 3.7346 1.3756 -4.5461 17 6 4.6719 1.2553 -5.7661 18 6 3.7656 0.5967 -6.8394 19 1 3.1443 1.3417 -7.3364 20 6 4.5999 -0.1840 -7.8570 21 6 2.9037 -0.3590 -5.9774 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.9034 -0.5277 4.4376 26 1 1.4495 -1.4980 -1.4099 27 1 1.0870 0.6161 -2.5526 28 1 2.7589 1.0459 -2.1183 29 1 3.5916 -0.9266 -3.3682 30 1 1.9200 -1.3570 -3.8029 31 1 3.3094 2.3782 -4.5025 32 1 4.2884 1.1652 -3.6310 33 1 5.0052 2.2397 -6.0946 34 1 5.5239 0.6157 -5.5360 35 1 5.1793 -0.9495 -7.3410 36 1 3.9383 -0.6567 -8.5830 37 1 5.2762 0.4981 -8.3721 38 1 3.4476 -1.2814 -5.7742 39 1 1.9607 -0.5762 -6.4792 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379651737.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:53 Heat of formation + Delta-G solvation = -21.603439 kcal Electronic energy + Delta-G solvation = -15866.309210 eV Core-core repulsion = 13421.521870 eV Total energy + Delta-G solvation = -2444.787340 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.19198 -38.07216 -35.16909 -34.00345 -31.73433 -30.48839 -28.26044 -27.12890 -25.82079 -23.54817 -22.11922 -21.52022 -20.91916 -18.76045 -17.35861 -17.04925 -16.61302 -16.24326 -15.24330 -15.13551 -14.84306 -14.60079 -14.26931 -14.11533 -13.89346 -13.63153 -13.37258 -13.19026 -13.00245 -12.68103 -12.53605 -12.03086 -11.97120 -11.92444 -11.82395 -11.52477 -11.48886 -11.42110 -11.16866 -10.75386 -9.30550 -9.05829 -8.27828 -6.30499 1.29349 1.35245 1.45376 2.31850 2.86835 3.06114 3.56848 3.73119 3.80398 4.00425 4.10356 4.27048 4.35292 4.44478 4.51478 4.53826 4.60191 4.65075 4.68265 4.75601 4.82761 4.86439 4.89777 4.96988 5.01051 5.06938 5.10224 5.22226 5.29338 5.36510 5.46713 5.65836 5.95731 6.06150 6.10309 6.66723 6.73405 6.77343 7.34673 8.89635 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.056747 B = 0.004738 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.301116 B = 5908.218547 C = 5936.147212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.188 3.812 3 H 0.025 0.975 4 C -0.506 4.506 5 H 0.035 0.965 6 C 0.009 3.991 7 N -0.951 5.951 8 Si 0.953 3.047 9 H -0.265 1.265 10 H -0.253 1.253 11 H -0.297 1.297 12 N -0.686 5.686 13 C 0.070 3.930 14 C 0.066 3.934 15 N -0.540 5.540 16 C 0.034 3.966 17 C -0.134 4.134 18 C -0.096 4.096 19 H 0.086 0.914 20 C -0.138 4.138 21 C 0.043 3.957 22 H 0.058 0.942 23 H 0.057 0.943 24 H 0.036 0.964 25 H 0.266 0.734 26 H 0.338 0.662 27 H 0.031 0.969 28 H 0.053 0.947 29 H 0.033 0.967 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.044 0.956 33 H 0.087 0.913 34 H 0.065 0.935 35 H 0.051 0.949 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.045 0.955 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.084 4.614 -22.460 22.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.078 3.922 3 H 0.043 0.957 4 C -0.545 4.545 5 H 0.054 0.946 6 C -0.188 4.188 7 N -0.592 5.592 8 Si 0.780 3.220 9 H -0.191 1.191 10 H -0.177 1.177 11 H -0.225 1.225 12 N -0.316 5.316 13 C -0.059 4.059 14 C -0.062 4.062 15 N -0.265 5.265 16 C -0.093 4.093 17 C -0.172 4.172 18 C -0.115 4.115 19 H 0.105 0.895 20 C -0.195 4.195 21 C -0.084 4.084 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.055 0.945 25 H 0.075 0.925 26 H 0.155 0.845 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.063 0.937 33 H 0.105 0.895 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.279 4.941 -22.141 22.721 hybrid contribution -0.496 0.031 0.807 0.947 sum 0.783 4.972 -21.334 21.920 Atomic orbital electron populations 1.22698 0.99289 1.01521 0.99908 1.19391 0.90150 0.93942 0.88677 0.95735 1.21280 1.30386 1.12581 0.90218 0.94626 1.25815 0.97560 1.00075 0.95327 1.70045 1.47940 1.42630 0.98544 0.85794 0.79110 0.79884 0.77173 1.19115 1.17701 1.22491 1.60397 1.58213 1.09760 1.03267 1.21828 0.99155 0.95236 0.89722 1.22046 0.99859 0.94651 0.89668 1.63490 1.45280 1.15276 1.02467 1.22905 0.91426 0.96926 0.98087 1.22850 0.97642 1.02119 0.94597 1.22283 0.96372 0.97449 0.95444 0.89530 1.21691 0.99653 0.99883 0.98310 1.23185 0.99965 0.95800 0.89462 0.92333 0.92407 0.94521 0.92540 0.84478 0.95098 0.92832 0.94908 0.90482 0.90614 0.93699 0.89471 0.91582 0.92997 0.91618 0.91496 0.93615 0.89813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.33 8.64 71.98 0.62 -6.70 16 2 C 0.19 8.95 2.17 44.17 0.10 9.05 16 3 H 0.02 1.22 6.86 -2.39 -0.02 1.20 16 4 C -0.51 -29.69 9.42 25.60 0.24 -29.45 16 5 H 0.04 2.35 8.06 -2.91 -0.02 2.32 16 6 C 0.01 0.53 5.45 84.65 0.46 0.99 16 7 N -0.95 -60.51 13.96 21.45 0.30 -60.21 16 8 Si 0.95 45.64 24.37 68.60 1.67 47.31 16 9 H -0.27 -11.99 6.87 99.48 0.68 -11.30 16 10 H -0.25 -11.32 6.53 99.48 0.65 -10.67 16 11 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 12 N -0.69 -28.20 6.23 -495.44 -3.09 -31.29 16 13 C 0.07 2.39 5.51 86.31 0.48 2.87 16 14 C 0.07 1.88 4.80 86.31 0.41 2.30 16 15 N -0.54 -13.45 5.16 -885.54 -4.57 -18.02 16 16 C 0.03 0.80 6.20 86.65 0.54 1.34 16 17 C -0.13 -2.37 6.41 31.78 0.20 -2.16 16 18 C -0.10 -1.54 3.63 -9.41 -0.03 -1.58 16 19 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 20 C -0.14 -1.73 9.30 71.98 0.67 -1.06 16 21 C 0.04 0.86 6.15 86.77 0.53 1.39 16 22 H 0.06 2.08 7.45 -2.39 -0.02 2.06 16 23 H 0.06 2.34 8.13 -2.39 -0.02 2.33 16 24 H 0.04 1.58 3.27 -2.39 -0.01 1.58 16 25 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 26 H 0.34 12.90 8.47 -89.70 -0.76 12.14 16 27 H 0.03 1.03 7.44 -2.39 -0.02 1.01 16 28 H 0.05 1.93 7.05 -2.39 -0.02 1.91 16 29 H 0.03 1.00 7.96 -2.39 -0.02 0.98 16 30 H 0.08 2.05 8.07 -2.39 -0.02 2.03 16 31 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.04 1.18 6.91 -2.38 -0.02 1.17 16 33 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.07 1.19 8.04 -2.39 -0.02 1.17 16 35 H 0.05 0.70 8.10 -2.39 -0.02 0.68 16 36 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.05 0.92 7.68 -2.39 -0.02 0.90 16 39 H 0.08 1.54 8.14 -2.38 -0.02 1.53 16 Total: -1.00 -65.65 298.57 -1.30 -66.95 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 0.16 Total: 18.28 kcal Atomic # 6 Polarization: -27.24 SS G_CDS: 4.22 Total: -23.02 kcal Atomic # 7 Polarization: -102.17 SS G_CDS: -7.36 Total: -109.52 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.67 Total: 47.31 kcal Total: -65.65 -1.30 -66.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379651737.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.350 kcal (2) G-P(sol) polarization free energy of solvation -65.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds