Wall clock time and date at job start Mon Mar 30 2020 03:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.45276 * 2 1 4 4 C 1.53037 * 109.46012 * 119.96564 * 2 1 3 5 5 H 1.09000 * 109.50726 * 299.14002 * 4 2 1 6 6 N 1.46902 * 109.50458 * 59.26046 * 4 2 1 7 7 C 1.53121 * 109.27992 * 179.19784 * 4 2 1 8 8 C 1.53124 * 109.16055 * 302.35221 * 7 4 2 9 9 C 1.53034 * 109.27908 * 57.64645 * 8 7 4 10 10 N 1.46838 * 109.46678 * 240.01966 * 2 1 3 11 11 C 1.46907 * 110.99834 * 54.14297 * 10 2 1 12 12 C 1.53002 * 109.47223 * 193.06447 * 11 10 2 13 13 C 1.53001 * 109.47165 * 179.97438 * 12 11 10 14 14 C 1.50692 * 109.47144 * 180.02562 * 13 12 11 15 15 H 1.08004 * 120.00216 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00335 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00687 * 180.02562 * 16 14 13 18 18 Si 1.86807 * 119.99487 * 359.97438 * 16 14 13 19 19 H 1.48493 * 109.46960 * 90.00394 * 18 16 14 20 20 H 1.48504 * 109.47016 * 210.00108 * 18 16 14 21 21 H 1.48494 * 109.47246 * 329.99993 * 18 16 14 22 22 H 1.09005 * 109.46922 * 171.81105 * 1 2 3 23 23 H 1.08993 * 109.47253 * 291.81110 * 1 2 3 24 24 H 1.08998 * 109.47029 * 51.81570 * 1 2 3 25 25 H 1.00898 * 110.99969 * 179.80277 * 6 4 2 26 26 H 1.00904 * 110.99836 * 303.75130 * 6 4 2 27 27 H 1.08992 * 109.52628 * 182.44162 * 7 4 2 28 28 H 1.09003 * 109.52156 * 62.24575 * 7 4 2 29 29 H 1.09008 * 109.49728 * 297.71307 * 8 7 4 30 30 H 1.09001 * 109.53746 * 177.61553 * 8 7 4 31 31 H 1.09006 * 109.46226 * 180.80511 * 9 8 7 32 32 H 1.08997 * 109.45229 * 60.83926 * 9 8 7 33 33 H 1.09009 * 109.46877 * 73.07142 * 11 10 2 34 34 H 1.09000 * 109.47324 * 313.07112 * 11 10 2 35 35 H 1.09000 * 109.46402 * 60.00354 * 12 11 10 36 36 H 1.09000 * 109.47513 * 300.00549 * 12 11 10 37 37 H 1.08997 * 109.46882 * 300.00528 * 13 12 11 38 38 H 1.09001 * 109.46434 * 60.00258 * 13 12 11 39 39 H 0.96992 * 120.00224 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7207 1.2501 5 1 1.6894 -0.1980 2.1400 6 7 1.5359 -2.1006 1.2605 7 6 3.5709 -0.7359 1.2358 8 6 4.0549 -1.4186 -0.0465 9 6 3.4865 -0.6777 -1.2589 10 7 2.0194 -0.6918 -1.1992 11 6 1.4373 -0.1108 -2.4165 12 6 1.7014 -1.0409 -3.6023 13 6 1.0947 -0.4361 -4.8699 14 6 1.3542 -1.3525 -6.0377 15 1 1.8972 -2.2744 -5.8904 16 6 0.8985 -1.0142 -7.2942 17 7 1.1245 -1.8142 -8.3132 18 14 -0.0413 0.5801 -7.5488 19 1 0.9129 1.6708 -7.8727 20 1 -1.0026 0.4146 -8.6685 21 1 -0.7813 0.9221 -6.3076 22 1 -0.3633 -1.0172 -0.1464 23 1 -0.3633 0.3818 0.9540 24 1 -0.3633 0.6353 -0.8078 25 1 1.8619 -2.5984 2.0753 26 1 0.5285 -2.1180 1.2051 27 1 3.9379 -1.2860 2.1022 28 1 3.9456 0.2873 1.2673 29 1 3.7125 -2.4535 -0.0591 30 1 5.1440 -1.3952 -0.0832 31 1 3.8176 -1.1699 -2.1734 32 1 3.8404 0.3532 -1.2529 33 1 1.8924 0.8610 -2.6087 34 1 0.3625 0.0114 -2.2828 35 1 1.2464 -2.0126 -3.4100 36 1 2.7762 -1.1631 -3.7360 37 1 0.0199 -0.3143 -4.7359 38 1 1.5493 0.5358 -5.0622 39 1 0.8042 -1.5759 -9.1972 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381772797.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:24 Heat of formation + Delta-G solvation = -34.617022 kcal Electronic energy + Delta-G solvation = -16329.655272 eV Core-core repulsion = 13884.303621 eV Total energy + Delta-G solvation = -2445.351651 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.52980 -36.73994 -35.09122 -33.98299 -33.22980 -30.56299 -28.58151 -27.50402 -25.28494 -23.28502 -22.22078 -21.48859 -19.88071 -18.87831 -17.05188 -16.84653 -16.46341 -16.17209 -15.82788 -15.26329 -14.85965 -14.78299 -14.30114 -14.11442 -13.71381 -13.56478 -13.23913 -12.94445 -12.75607 -12.68391 -12.42462 -12.14297 -11.79756 -11.75349 -11.65993 -11.47198 -11.38574 -11.04540 -10.92901 -10.75495 -9.28252 -9.04107 -8.28809 -6.33102 1.35282 1.37749 1.50224 2.36839 2.97932 3.06162 3.75545 3.80636 3.89496 4.09618 4.20115 4.31864 4.37325 4.43890 4.51578 4.57444 4.70595 4.74016 4.82432 4.89076 4.92049 4.97934 5.05427 5.06837 5.10020 5.16487 5.30429 5.35978 5.54925 5.57929 5.63172 5.67711 6.24352 6.32365 6.34703 6.54491 6.75094 6.81055 7.31316 8.88472 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.043599 B = 0.005658 C = 0.005360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.064356 B = 4947.946466 C = 5222.990527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.082 3.918 3 H 0.035 0.965 4 C 0.105 3.895 5 H 0.050 0.950 6 N -0.838 5.838 7 C -0.111 4.111 8 C -0.102 4.102 9 C 0.053 3.947 10 N -0.521 5.521 11 C 0.059 3.941 12 C -0.083 4.083 13 C -0.008 4.008 14 C -0.533 4.533 15 H 0.027 0.973 16 C 0.002 3.998 17 N -0.954 5.954 18 Si 0.954 3.046 19 H -0.266 1.266 20 H -0.282 1.282 21 H -0.245 1.245 22 H 0.064 0.936 23 H 0.076 0.924 24 H 0.051 0.949 25 H 0.343 0.657 26 H 0.343 0.657 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.025 0.975 33 H 0.024 0.976 34 H 0.081 0.919 35 H 0.045 0.955 36 H 0.040 0.960 37 H 0.021 0.979 38 H 0.016 0.984 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.890 6.156 23.036 23.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 H 0.053 0.947 4 C -0.007 4.007 5 H 0.067 0.933 6 N -0.371 5.371 7 C -0.149 4.149 8 C -0.140 4.140 9 C -0.075 4.075 10 N -0.246 5.246 11 C -0.068 4.068 12 C -0.121 4.121 13 C -0.046 4.046 14 C -0.571 4.571 15 H 0.045 0.955 16 C -0.194 4.194 17 N -0.594 5.594 18 Si 0.777 3.223 19 H -0.191 1.191 20 H -0.208 1.208 21 H -0.169 1.169 22 H 0.083 0.917 23 H 0.094 0.906 24 H 0.070 0.930 25 H 0.156 0.844 26 H 0.158 0.842 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.043 0.957 33 H 0.042 0.958 34 H 0.099 0.901 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.039 0.961 38 H 0.034 0.966 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.122 5.566 22.232 22.945 hybrid contribution -0.380 1.297 -0.147 1.360 sum 0.742 6.863 22.085 23.138 Atomic orbital electron populations 1.21922 0.93917 1.02593 1.02187 1.21732 0.95968 0.94452 0.90505 0.94681 1.21308 0.95031 0.89691 0.94681 0.93253 1.58481 1.15928 1.14409 1.48248 1.21620 0.94567 1.00679 0.98067 1.21393 0.99016 1.00364 0.93193 1.22113 0.87691 0.98234 0.99462 1.61836 1.06839 1.54829 1.01084 1.22166 1.00177 0.94958 0.89543 1.21232 0.99341 0.98404 0.93129 1.19484 0.96331 0.95494 0.93317 1.21507 1.35495 1.06522 0.93586 0.95459 1.26071 0.96835 1.01067 0.95468 1.70079 1.48670 1.39827 1.00863 0.85597 0.78977 0.79011 0.78685 1.19123 1.20780 1.16886 0.91730 0.90554 0.92963 0.84405 0.84245 0.90584 0.91671 0.91378 0.91380 0.92449 0.95726 0.95772 0.90121 0.93657 0.94110 0.96109 0.96607 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 7.93 71.98 0.57 -2.48 16 2 C 0.08 1.88 2.21 44.94 0.10 1.98 16 3 H 0.04 0.81 8.14 -2.39 -0.02 0.80 16 4 C 0.10 1.93 3.12 44.97 0.14 2.07 16 5 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 6 N -0.84 -15.56 8.44 -168.45 -1.42 -16.98 16 7 C -0.11 -2.00 5.67 30.68 0.17 -1.83 16 8 C -0.10 -2.33 5.93 30.65 0.18 -2.15 16 9 C 0.05 1.50 5.30 86.33 0.46 1.96 16 10 N -0.52 -15.24 4.32 -871.11 -3.76 -19.01 16 11 C 0.06 1.99 4.73 86.30 0.41 2.40 16 12 C -0.08 -3.53 5.15 30.60 0.16 -3.37 16 13 C -0.01 -0.41 4.04 29.85 0.12 -0.29 16 14 C -0.53 -32.34 9.66 25.60 0.25 -32.09 16 15 H 0.03 1.83 7.99 -2.91 -0.02 1.80 16 16 C 0.00 0.11 5.47 84.65 0.46 0.58 16 17 N -0.95 -61.74 13.96 21.45 0.30 -61.45 16 18 Si 0.95 45.46 27.47 68.60 1.88 47.35 16 19 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 20 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 21 H -0.25 -10.81 6.54 99.48 0.65 -10.16 16 22 H 0.06 1.43 7.01 -2.38 -0.02 1.41 16 23 H 0.08 1.18 8.13 -2.39 -0.02 1.16 16 24 H 0.05 1.15 6.55 -2.39 -0.02 1.14 16 25 H 0.34 4.98 9.04 -89.70 -0.81 4.17 16 26 H 0.34 6.04 7.21 -89.69 -0.65 5.39 16 27 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.07 1.78 7.73 -2.38 -0.02 1.76 16 30 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.06 1.87 6.35 -2.38 -0.02 1.85 16 32 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.02 0.80 8.09 -2.38 -0.02 0.78 16 34 H 0.08 2.59 5.69 -2.39 -0.01 2.57 16 35 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.04 1.78 6.53 -2.39 -0.02 1.77 16 37 H 0.02 0.99 7.20 -2.39 -0.02 0.97 16 38 H 0.02 0.75 7.57 -2.39 -0.02 0.73 16 39 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 Total: -1.00 -68.30 294.54 -0.47 -68.77 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -0.49 Total: 14.54 kcal Atomic # 6 Polarization: -36.25 SS G_CDS: 3.02 Total: -33.23 kcal Atomic # 7 Polarization: -92.55 SS G_CDS: -4.89 Total: -97.43 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.88 Total: 47.35 kcal Total: -68.30 -0.47 -68.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381772797.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.154 kcal (2) G-P(sol) polarization free energy of solvation -68.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds