Wall clock time and date at job start Mon Mar 30 2020 02:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52994 * 109.47047 * 2 1 4 4 N 1.46499 * 109.46991 * 120.00104 * 2 1 3 5 5 C 1.36933 * 120.00201 * 125.73233 * 4 2 1 6 6 H 1.07998 * 120.00000 * 220.27571 * 5 4 2 7 7 C 1.38810 * 119.99649 * 40.55187 * 5 4 2 8 8 N 1.31618 * 120.00514 * 25.98503 * 7 5 4 9 9 Si 1.86803 * 119.99829 * 205.98625 * 7 5 4 10 10 H 1.48499 * 109.47279 * 89.99874 * 9 7 5 11 11 H 1.48501 * 109.47372 * 210.00117 * 9 7 5 12 12 H 1.48502 * 109.47356 * 329.99893 * 9 7 5 13 13 C 1.46503 * 119.99895 * 305.73148 * 4 2 1 14 14 C 1.52996 * 109.47212 * 264.05353 * 13 4 2 15 15 H 1.08998 * 109.87951 * 52.44203 * 14 13 4 16 16 C 1.54317 * 109.88810 * 291.41255 * 14 13 4 17 17 C 1.55391 * 102.90082 * 218.40863 * 16 14 13 18 18 C 1.54902 * 101.74241 * 35.48254 * 17 16 14 19 19 N 1.47441 * 109.88672 * 173.47939 * 14 13 4 20 20 C 1.46896 * 111.00071 * 356.14510 * 19 14 13 21 21 H 1.09004 * 109.46871 * 307.38508 * 1 2 3 22 22 H 1.09002 * 109.46505 * 67.38041 * 1 2 3 23 23 H 1.08990 * 109.47167 * 187.38363 * 1 2 3 24 24 H 1.08996 * 109.46888 * 239.99805 * 2 1 3 25 25 H 1.08999 * 109.46767 * 177.46895 * 3 2 1 26 26 H 1.08996 * 109.47270 * 297.46570 * 3 2 1 27 27 H 1.09000 * 109.47346 * 57.47135 * 3 2 1 28 28 H 0.96999 * 120.00625 * 180.02562 * 8 7 5 29 29 H 1.09004 * 109.47143 * 24.05642 * 13 4 2 30 30 H 1.08999 * 109.46942 * 144.04909 * 13 4 2 31 31 H 1.09008 * 110.70870 * 336.69688 * 16 14 13 32 32 H 1.09005 * 110.70850 * 99.92791 * 16 14 13 33 33 H 1.09003 * 110.87448 * 277.39285 * 17 16 14 34 34 H 1.09005 * 111.05879 * 153.64764 * 17 16 14 35 35 H 1.09005 * 110.37313 * 204.18635 * 18 17 16 36 36 H 1.08997 * 110.37643 * 81.84835 * 18 17 16 37 37 H 1.08999 * 109.47460 * 58.13180 * 20 19 14 38 38 H 1.09007 * 109.47145 * 178.12512 * 20 19 14 39 39 H 1.09000 * 109.47187 * 298.12078 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.8996 -1.7316 1.0740 6 1 2.7938 -2.6050 1.7005 7 6 3.9321 -1.6619 0.1489 8 7 4.3951 -0.4908 -0.2336 9 14 4.6646 -3.2304 -0.5532 10 1 3.9235 -3.6165 -1.7808 11 1 6.0932 -3.0028 -0.8884 12 1 4.5593 -4.3189 0.4515 13 6 1.5640 -0.2675 2.5231 14 6 2.5881 0.6932 3.1305 15 1 2.7983 1.5020 2.4306 16 6 3.8898 -0.0670 3.4605 17 6 4.3350 0.5743 4.8041 18 6 2.9733 0.8419 5.4922 19 7 2.0687 1.2462 4.3948 20 6 0.6968 0.7855 4.6467 21 1 -0.3633 0.6240 0.8166 22 1 -0.3632 0.3953 -0.9487 23 1 -0.3633 -1.0190 0.1321 24 1 1.8934 -0.5139 -0.8899 25 1 3.1291 1.4427 0.0454 26 1 1.7143 1.9430 -0.9118 27 1 1.6402 1.9692 0.8664 28 1 5.1164 -0.4420 -0.8804 29 1 0.6014 0.2362 2.4340 30 1 1.4587 -1.1409 3.1666 31 1 3.6926 -1.1314 3.5887 32 1 4.6388 0.0966 2.6856 33 1 4.8743 1.5054 4.6301 34 1 4.9381 -0.1204 5.3888 35 1 3.0683 1.6463 6.2216 36 1 2.6058 -0.0651 5.9721 37 1 0.6791 -0.3039 4.6770 38 1 0.3502 1.1811 5.6014 39 1 0.0431 1.1375 3.8487 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000386714630.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:27 Heat of formation + Delta-G solvation = 24.140458 kcal Electronic energy + Delta-G solvation = -17365.445528 eV Core-core repulsion = 14922.641792 eV Total energy + Delta-G solvation = -2442.803736 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.84197 -36.05918 -31.99871 -31.47870 -30.76676 -28.23613 -26.05103 -25.02935 -24.83873 -22.57574 -20.55019 -19.51830 -18.40493 -16.92223 -15.25040 -15.07515 -14.56967 -14.36798 -13.73613 -13.36679 -12.76533 -12.68838 -12.37534 -12.10413 -11.91425 -11.51657 -11.37910 -11.20545 -10.91741 -10.83170 -10.74133 -10.59396 -10.35009 -10.32619 -10.13229 -9.82619 -9.72522 -9.47499 -9.25869 -8.35023 -7.73453 -6.48680 -5.78519 -3.29530 3.36615 3.45239 3.46814 4.47597 4.63087 5.28967 5.31636 5.43653 5.58270 5.62914 5.83780 5.91302 5.98594 6.08073 6.10657 6.20451 6.31092 6.31662 6.39651 6.43839 6.51375 6.60236 6.69499 6.77571 6.82917 6.90713 6.95325 7.11664 7.18243 7.40293 7.52597 7.66064 7.69251 7.78794 7.95388 8.57668 9.25843 9.85670 10.49753 11.22511 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.024481 B = 0.011318 C = 0.009008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.487334 B = 2473.406164 C = 3107.553593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.190 3.810 3 C -0.159 4.159 4 N -0.577 5.577 5 C -0.266 4.266 6 H 0.054 0.946 7 C 0.027 3.973 8 N -0.873 5.873 9 Si 0.884 3.116 10 H -0.287 1.287 11 H -0.293 1.293 12 H -0.279 1.279 13 C 0.137 3.863 14 C 0.053 3.947 15 H 0.084 0.916 16 C -0.106 4.106 17 C -0.138 4.138 18 C 0.044 3.956 19 N -0.537 5.537 20 C 0.020 3.980 21 H 0.039 0.961 22 H 0.039 0.961 23 H 0.047 0.953 24 H 0.067 0.933 25 H 0.089 0.911 26 H 0.022 0.978 27 H 0.029 0.971 28 H 0.252 0.748 29 H 0.045 0.955 30 H 0.032 0.968 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.037 0.963 37 H 0.029 0.971 38 H 0.052 0.948 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.029 2.411 6.218 7.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.083 3.917 3 C -0.217 4.217 4 N -0.298 5.298 5 C -0.396 4.396 6 H 0.072 0.928 7 C -0.175 4.175 8 N -0.513 5.513 9 Si 0.713 3.287 10 H -0.214 1.214 11 H -0.219 1.219 12 H -0.204 1.204 13 C 0.010 3.990 14 C -0.056 4.056 15 H 0.102 0.898 16 C -0.144 4.144 17 C -0.176 4.176 18 C -0.084 4.084 19 N -0.262 5.262 20 C -0.129 4.129 21 H 0.059 0.941 22 H 0.058 0.942 23 H 0.066 0.934 24 H 0.085 0.915 25 H 0.107 0.893 26 H 0.041 0.959 27 H 0.048 0.952 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.055 0.945 37 H 0.048 0.952 38 H 0.071 0.929 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.926 2.997 6.065 7.822 hybrid contribution 0.509 -1.600 -0.392 1.724 sum -3.416 1.398 5.672 6.768 Atomic orbital electron populations 1.22367 1.00051 1.00415 0.99414 1.20108 0.88821 0.92106 0.90665 1.22360 1.04702 0.97235 0.97441 1.43867 1.50578 1.36946 0.98406 1.18837 1.05351 0.93924 1.21448 0.92817 1.25141 0.95158 0.95585 1.01639 1.70064 1.25941 1.22554 1.32730 0.86615 0.77937 0.84466 0.79641 1.21427 1.21920 1.20420 1.21459 0.94611 0.94650 0.88328 1.23245 0.95834 0.97126 0.89388 0.89778 1.22586 0.97790 0.98968 0.95079 1.22834 0.96153 1.00581 0.98013 1.22966 0.93124 0.98116 0.94223 1.63805 1.01681 1.57710 1.03014 1.22469 0.91499 0.98162 1.00722 0.94144 0.94168 0.93428 0.91453 0.89271 0.95884 0.95201 0.93758 0.93724 0.94945 0.91800 0.89862 0.91669 0.92020 0.91560 0.94462 0.95245 0.92930 0.91463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 8.89 37.16 0.33 -2.79 16 2 C 0.19 4.28 2.46 -67.93 -0.17 4.11 16 3 C -0.16 -3.45 8.18 37.15 0.30 -3.15 16 4 N -0.58 -13.63 2.30 -165.66 -0.38 -14.02 16 5 C -0.27 -6.90 7.75 -15.06 -0.12 -7.02 16 6 H 0.05 1.44 7.95 -52.49 -0.42 1.03 16 7 C 0.03 0.71 4.59 -17.43 -0.08 0.63 16 8 N -0.87 -23.52 11.08 55.49 0.61 -22.90 16 9 Si 0.88 20.98 29.63 -169.99 -5.04 15.94 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.14 2.86 3.29 -4.04 -0.01 2.85 16 14 C 0.05 1.08 3.51 -66.73 -0.23 0.85 16 15 H 0.08 1.93 6.08 -51.93 -0.32 1.61 16 16 C -0.11 -2.18 5.38 -24.77 -0.13 -2.31 16 17 C -0.14 -2.32 7.08 -24.46 -0.17 -2.49 16 18 C 0.04 0.70 6.73 -2.30 -0.02 0.68 16 19 N -0.54 -9.55 5.44 -231.57 -1.26 -10.81 16 20 C 0.02 0.31 8.23 60.06 0.49 0.81 16 21 H 0.04 0.73 6.82 -51.93 -0.35 0.37 16 22 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 23 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.07 1.70 7.12 -51.93 -0.37 1.33 16 25 H 0.09 2.21 6.48 -51.93 -0.34 1.87 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.03 0.62 6.82 -51.93 -0.35 0.26 16 28 H 0.25 6.70 8.31 -40.82 -0.34 6.37 16 29 H 0.04 0.89 4.37 -51.93 -0.23 0.66 16 30 H 0.03 0.70 6.89 -51.93 -0.36 0.34 16 31 H 0.06 1.40 7.24 -51.92 -0.38 1.02 16 32 H 0.08 1.97 8.14 -51.93 -0.42 1.55 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.04 0.57 7.80 -51.93 -0.41 0.17 16 37 H 0.03 0.47 6.57 -51.93 -0.34 0.12 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.07 1.04 6.71 -51.93 -0.35 0.69 16 LS Contribution 290.17 15.07 4.37 4.37 Total: -1.00 -26.20 290.17 -8.21 -34.42 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -6.72 Total: 0.83 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: 0.20 Total: -7.83 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: -1.03 Total: -47.73 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.04 Total: 15.94 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -26.20 -8.21 -34.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386714630.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.556 kcal (2) G-P(sol) polarization free energy of solvation -26.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds