Wall clock time and date at job start Mon Mar 30 2020 02:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52994 * 109.47047 * 2 1 4 4 N 1.46499 * 109.46991 * 120.00104 * 2 1 3 5 5 C 1.36933 * 120.00201 * 125.73233 * 4 2 1 6 6 H 1.07998 * 120.00000 * 220.27571 * 5 4 2 7 7 C 1.38810 * 119.99649 * 40.55187 * 5 4 2 8 8 N 1.31618 * 120.00514 * 25.98503 * 7 5 4 9 9 Si 1.86803 * 119.99829 * 205.98625 * 7 5 4 10 10 H 1.48499 * 109.47279 * 89.99874 * 9 7 5 11 11 H 1.48501 * 109.47372 * 210.00117 * 9 7 5 12 12 H 1.48502 * 109.47356 * 329.99893 * 9 7 5 13 13 C 1.46503 * 119.99895 * 305.73148 * 4 2 1 14 14 C 1.52996 * 109.47212 * 264.05353 * 13 4 2 15 15 H 1.08998 * 109.87951 * 52.44203 * 14 13 4 16 16 C 1.54317 * 109.88810 * 291.41255 * 14 13 4 17 17 C 1.55391 * 102.90082 * 218.40863 * 16 14 13 18 18 C 1.54902 * 101.74241 * 35.48254 * 17 16 14 19 19 N 1.47441 * 109.88672 * 173.47939 * 14 13 4 20 20 C 1.46896 * 111.00071 * 356.14510 * 19 14 13 21 21 H 1.09004 * 109.46871 * 307.38508 * 1 2 3 22 22 H 1.09002 * 109.46505 * 67.38041 * 1 2 3 23 23 H 1.08990 * 109.47167 * 187.38363 * 1 2 3 24 24 H 1.08996 * 109.46888 * 239.99805 * 2 1 3 25 25 H 1.08999 * 109.46767 * 177.46895 * 3 2 1 26 26 H 1.08996 * 109.47270 * 297.46570 * 3 2 1 27 27 H 1.09000 * 109.47346 * 57.47135 * 3 2 1 28 28 H 0.96999 * 120.00625 * 180.02562 * 8 7 5 29 29 H 1.09004 * 109.47143 * 24.05642 * 13 4 2 30 30 H 1.08999 * 109.46942 * 144.04909 * 13 4 2 31 31 H 1.09008 * 110.70870 * 336.69688 * 16 14 13 32 32 H 1.09005 * 110.70850 * 99.92791 * 16 14 13 33 33 H 1.09003 * 110.87448 * 277.39285 * 17 16 14 34 34 H 1.09005 * 111.05879 * 153.64764 * 17 16 14 35 35 H 1.09005 * 110.37313 * 204.18635 * 18 17 16 36 36 H 1.08997 * 110.37643 * 81.84835 * 18 17 16 37 37 H 1.08999 * 109.47460 * 58.13180 * 20 19 14 38 38 H 1.09007 * 109.47145 * 178.12512 * 20 19 14 39 39 H 1.09000 * 109.47187 * 298.12078 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.8996 -1.7316 1.0740 6 1 2.7938 -2.6050 1.7005 7 6 3.9321 -1.6619 0.1489 8 7 4.3951 -0.4908 -0.2336 9 14 4.6646 -3.2304 -0.5532 10 1 3.9235 -3.6165 -1.7808 11 1 6.0932 -3.0028 -0.8884 12 1 4.5593 -4.3189 0.4515 13 6 1.5640 -0.2675 2.5231 14 6 2.5881 0.6932 3.1305 15 1 2.7983 1.5020 2.4306 16 6 3.8898 -0.0670 3.4605 17 6 4.3350 0.5743 4.8041 18 6 2.9733 0.8419 5.4922 19 7 2.0687 1.2462 4.3948 20 6 0.6968 0.7855 4.6467 21 1 -0.3633 0.6240 0.8166 22 1 -0.3632 0.3953 -0.9487 23 1 -0.3633 -1.0190 0.1321 24 1 1.8934 -0.5139 -0.8899 25 1 3.1291 1.4427 0.0454 26 1 1.7143 1.9430 -0.9118 27 1 1.6402 1.9692 0.8664 28 1 5.1164 -0.4420 -0.8804 29 1 0.6014 0.2362 2.4340 30 1 1.4587 -1.1409 3.1666 31 1 3.6926 -1.1314 3.5887 32 1 4.6388 0.0966 2.6856 33 1 4.8743 1.5054 4.6301 34 1 4.9381 -0.1204 5.3888 35 1 3.0683 1.6463 6.2216 36 1 2.6058 -0.0651 5.9721 37 1 0.6791 -0.3039 4.6770 38 1 0.3502 1.1811 5.6014 39 1 0.0431 1.1375 3.8487 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000386714630.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:26 Heat of formation + Delta-G solvation = 8.660713 kcal Electronic energy + Delta-G solvation = -17366.116780 eV Core-core repulsion = 14922.641792 eV Total energy + Delta-G solvation = -2443.474988 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.37206 -37.80349 -33.91657 -32.93722 -32.46901 -29.95900 -27.71574 -26.62045 -26.37077 -24.38795 -22.02393 -21.21456 -20.05970 -18.79560 -16.85786 -16.60983 -16.34574 -16.10247 -15.44418 -14.90860 -14.40211 -14.28724 -13.97887 -13.72559 -13.39303 -13.32757 -13.01055 -12.85617 -12.71611 -12.56752 -12.23607 -12.13499 -12.07218 -11.95652 -11.80278 -11.58657 -11.39962 -11.17898 -11.02909 -10.37348 -9.19069 -8.39983 -7.77626 -5.32126 1.43987 1.49000 1.54301 2.53429 3.18384 3.28348 3.79136 3.97437 3.99904 4.18806 4.41549 4.48436 4.55792 4.58742 4.70296 4.73902 4.80067 4.81373 4.85780 4.94430 4.97486 5.09024 5.10404 5.14926 5.22124 5.25965 5.34465 5.40883 5.47583 5.62814 5.75530 5.77564 6.04155 6.19910 6.30833 6.56538 7.28582 7.94325 8.52331 9.18768 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.024481 B = 0.011318 C = 0.009008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.487334 B = 2473.406164 C = 3107.553593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.186 3.814 3 C -0.144 4.144 4 N -0.589 5.589 5 C -0.267 4.267 6 H 0.042 0.958 7 C -0.011 4.011 8 N -0.892 5.892 9 Si 0.935 3.065 10 H -0.289 1.289 11 H -0.297 1.297 12 H -0.276 1.276 13 C 0.144 3.856 14 C 0.064 3.936 15 H 0.056 0.944 16 C -0.102 4.102 17 C -0.130 4.130 18 C 0.047 3.953 19 N -0.544 5.544 20 C 0.020 3.980 21 H 0.053 0.947 22 H 0.061 0.939 23 H 0.044 0.956 24 H 0.034 0.966 25 H 0.055 0.945 26 H 0.040 0.960 27 H 0.036 0.964 28 H 0.247 0.753 29 H 0.060 0.940 30 H 0.026 0.974 31 H 0.045 0.955 32 H 0.042 0.958 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.047 0.953 37 H 0.025 0.975 38 H 0.080 0.920 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.249 2.778 7.553 9.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.080 3.920 3 C -0.203 4.203 4 N -0.310 5.310 5 C -0.398 4.398 6 H 0.059 0.941 7 C -0.211 4.211 8 N -0.533 5.533 9 Si 0.764 3.236 10 H -0.216 1.216 11 H -0.223 1.223 12 H -0.201 1.201 13 C 0.017 3.983 14 C -0.046 4.046 15 H 0.074 0.926 16 C -0.141 4.141 17 C -0.168 4.168 18 C -0.081 4.081 19 N -0.269 5.269 20 C -0.128 4.128 21 H 0.072 0.928 22 H 0.080 0.920 23 H 0.063 0.937 24 H 0.052 0.948 25 H 0.074 0.926 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.044 0.956 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.065 0.935 37 H 0.043 0.957 38 H 0.098 0.902 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.162 3.363 7.416 9.642 hybrid contribution 0.869 -1.699 -0.771 2.058 sum -4.293 1.664 6.645 8.084 Atomic orbital electron populations 1.22189 0.96858 1.00741 1.01158 1.20119 0.91184 0.91732 0.88988 1.22156 1.02396 0.97174 0.98554 1.44024 1.50351 1.36835 0.99830 1.18858 1.05556 0.94231 1.21136 0.94090 1.25631 0.95733 0.97479 1.02234 1.70183 1.26340 1.23705 1.33095 0.85812 0.76907 0.82041 0.78838 1.21572 1.22342 1.20064 1.21446 0.95326 0.94573 0.86930 1.22905 0.95492 0.95768 0.90457 0.92616 1.22385 0.97242 0.98204 0.96235 1.22802 0.97322 1.00679 0.95947 1.23045 0.91690 0.99526 0.93824 1.63778 1.03049 1.57718 1.02341 1.22529 0.90078 0.98010 1.02223 0.92843 0.92025 0.93707 0.94803 0.92641 0.94142 0.94509 0.94339 0.92204 0.95575 0.93625 0.93873 0.91495 0.90133 0.89061 0.93453 0.95660 0.90172 0.91460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.46 8.89 71.99 0.64 -4.82 16 2 C 0.19 8.38 2.46 44.99 0.11 8.49 16 3 C -0.14 -6.25 8.18 71.98 0.59 -5.67 16 4 N -0.59 -28.07 2.30 -678.04 -1.56 -29.63 16 5 C -0.27 -14.15 7.75 84.03 0.65 -13.50 16 6 H 0.04 2.26 7.95 -2.91 -0.02 2.23 16 7 C -0.01 -0.57 4.59 84.86 0.39 -0.18 16 8 N -0.89 -49.60 11.08 21.65 0.24 -49.36 16 9 Si 0.93 43.94 29.63 68.60 2.03 45.97 16 10 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 11 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 13 C 0.14 5.94 3.29 86.38 0.28 6.22 16 14 C 0.06 2.57 3.51 45.26 0.16 2.73 16 15 H 0.06 2.58 6.08 -2.39 -0.01 2.57 16 16 C -0.10 -4.25 5.38 31.86 0.17 -4.08 16 17 C -0.13 -4.17 7.08 32.07 0.23 -3.94 16 18 C 0.05 1.35 6.73 86.77 0.58 1.93 16 19 N -0.54 -18.16 5.44 -886.57 -4.83 -22.99 16 20 C 0.02 0.56 8.23 127.69 1.05 1.61 16 21 H 0.05 1.79 6.82 -2.38 -0.02 1.77 16 22 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 23 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.03 1.74 7.12 -2.39 -0.02 1.72 16 25 H 0.05 2.80 6.48 -2.39 -0.02 2.79 16 26 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.04 1.51 6.82 -2.39 -0.02 1.49 16 28 H 0.25 13.56 8.31 -92.71 -0.77 12.79 16 29 H 0.06 2.27 4.37 -2.38 -0.01 2.26 16 30 H 0.03 1.11 6.89 -2.39 -0.02 1.09 16 31 H 0.04 2.03 7.24 -2.38 -0.02 2.01 16 32 H 0.04 2.12 8.14 -2.38 -0.02 2.10 16 33 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 35 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 36 H 0.05 1.29 7.80 -2.39 -0.02 1.27 16 37 H 0.02 0.73 6.57 -2.39 -0.02 0.72 16 38 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 39 H 0.07 1.89 6.71 -2.39 -0.02 1.87 16 Total: -1.00 -56.92 290.17 1.74 -55.18 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 1.00 Total: 12.03 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: 4.86 Total: -11.20 kcal Atomic # 7 Polarization: -95.84 SS G_CDS: -6.15 Total: -101.98 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -56.92 1.74 -55.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386714630.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.841 kcal (2) G-P(sol) polarization free energy of solvation -56.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds