Wall clock time and date at job start Mon Mar 30 2020 03:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46796 * 2 1 4 4 C 1.50699 * 109.47377 * 239.99624 * 2 1 3 5 5 H 1.08001 * 119.99869 * 245.46085 * 4 2 1 6 6 C 1.37877 * 120.00068 * 65.45820 * 4 2 1 7 7 N 1.31514 * 119.99657 * 9.54534 * 6 4 2 8 8 Si 1.86793 * 120.00088 * 189.54728 * 6 4 2 9 9 H 1.48499 * 109.47085 * 84.99722 * 8 6 4 10 10 H 1.48501 * 109.47193 * 204.99770 * 8 6 4 11 11 H 1.48498 * 109.47084 * 324.99687 * 8 6 4 12 12 N 1.46900 * 109.46945 * 119.99353 * 2 1 3 13 13 C 1.46900 * 111.00430 * 274.99802 * 12 2 1 14 14 C 1.52998 * 109.47271 * 180.02562 * 13 12 2 15 15 H 1.08993 * 110.87649 * 57.39593 * 14 13 12 16 16 C 1.55144 * 110.99018 * 181.28215 * 14 13 12 17 17 C 1.54316 * 103.01958 * 153.74520 * 16 14 13 18 18 H 1.09005 * 109.88739 * 97.12259 * 17 16 14 19 19 C 1.52998 * 109.88972 * 218.31142 * 17 16 14 20 20 N 1.47443 * 107.23363 * 337.71832 * 17 16 14 21 21 C 1.46903 * 110.99740 * 236.73972 * 20 17 16 22 22 C 1.47847 * 108.56676 * 359.00668 * 20 17 16 23 23 H 1.09000 * 109.47135 * 303.76151 * 1 2 3 24 24 H 1.08998 * 109.47275 * 63.76493 * 1 2 3 25 25 H 1.09004 * 109.47334 * 183.76544 * 1 2 3 26 26 H 0.97003 * 119.99605 * 179.97438 * 7 6 4 27 27 H 1.00900 * 110.99831 * 151.04693 * 12 2 1 28 28 H 1.09000 * 109.46662 * 60.00060 * 13 12 2 29 29 H 1.08996 * 109.47643 * 300.00671 * 13 12 2 30 30 H 1.09003 * 110.70277 * 35.36411 * 16 14 13 31 31 H 1.08998 * 110.70785 * 272.12985 * 16 14 13 32 32 H 1.08997 * 109.47091 * 179.22383 * 19 17 16 33 33 H 1.09002 * 109.47212 * 299.22277 * 19 17 16 34 34 H 1.08994 * 109.47116 * 59.21979 * 19 17 16 35 35 H 1.09002 * 109.46662 * 60.00125 * 21 20 17 36 36 H 1.09004 * 109.46696 * 179.97438 * 21 20 17 37 37 H 1.08999 * 109.47293 * 299.99760 * 21 20 17 38 38 H 1.08996 * 110.37222 * 142.92454 * 22 20 17 39 39 H 1.09000 * 110.37367 * 265.26646 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5786 -1.6371 -1.1336 6 6 1.7946 -0.1776 -2.4796 7 7 1.2990 1.0353 -2.5935 8 14 2.1764 -1.1782 -4.0100 9 1 1.0246 -2.0613 -4.3240 10 1 2.4231 -0.2615 -5.1520 11 1 3.3850 -2.0072 -3.7706 12 7 2.0196 -0.6924 1.1995 13 6 2.0825 0.2228 2.3469 14 6 2.5962 -0.5326 3.5742 15 1 3.5725 -0.9753 3.3773 16 6 2.6461 0.3949 4.8169 17 6 2.5023 -0.5928 5.9939 18 1 3.4858 -0.8369 6.3954 19 6 1.6287 0.0246 7.0877 20 7 1.8596 -1.8104 5.4663 21 6 0.6272 -2.1172 6.2046 22 6 1.5798 -1.6098 4.0284 23 1 -0.3633 0.5711 0.8544 24 1 -0.3634 0.4543 -0.9218 25 1 -0.3634 -1.0255 0.0675 26 1 1.1321 1.4104 -3.4724 27 1 2.9172 -1.1204 1.0289 28 1 1.0871 0.6165 2.5525 29 1 2.7588 1.0464 2.1183 30 1 1.8167 1.1020 4.8036 31 1 3.6003 0.9193 4.8684 32 1 1.5203 -0.6836 7.9091 33 1 2.0973 0.9377 7.4548 34 1 0.6462 0.2597 6.6786 35 1 -0.0700 -1.2848 6.1096 36 1 0.1733 -3.0195 5.7947 37 1 0.8637 -2.2749 7.2569 38 1 1.7384 -2.5371 3.4780 39 1 0.5597 -1.2529 3.8865 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396547566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:20 Heat of formation + Delta-G solvation = -22.550402 kcal Electronic energy + Delta-G solvation = -16158.419520 eV Core-core repulsion = 13713.591117 eV Total energy + Delta-G solvation = -2444.828403 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.52597 -37.73068 -35.01713 -33.24088 -32.12594 -30.26526 -27.51778 -26.92012 -26.31596 -24.48800 -21.79165 -21.38034 -20.38362 -18.47466 -17.51873 -16.82937 -16.20505 -15.91364 -15.42975 -15.29504 -14.87188 -14.54664 -14.37370 -13.71827 -13.47204 -13.17916 -12.99538 -12.83791 -12.69532 -12.57625 -12.54092 -12.30543 -12.19044 -12.08189 -11.90187 -11.64818 -11.53093 -11.36923 -10.92133 -10.54665 -9.20363 -9.02735 -8.17926 -6.27326 1.41894 1.44007 1.52898 2.41574 3.07936 3.14035 3.49203 3.74440 3.80402 4.11488 4.23489 4.39427 4.40453 4.57536 4.57854 4.65479 4.69835 4.71749 4.81114 4.84847 4.94000 4.95365 5.01739 5.04697 5.15570 5.19614 5.24752 5.31225 5.41670 5.46908 5.66120 5.80680 6.07724 6.14468 6.21938 6.45214 6.78857 7.00586 7.42450 8.91290 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.054847 B = 0.005090 C = 0.005016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.387311 B = 5499.285587 C = 5580.339958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.213 3.787 3 H -0.029 1.029 4 C -0.539 4.539 5 H 0.060 0.940 6 C 0.015 3.985 7 N -0.920 5.920 8 Si 0.960 3.040 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.267 1.267 12 N -0.682 5.682 13 C 0.077 3.923 14 C -0.087 4.087 15 H 0.078 0.922 16 C -0.129 4.129 17 C 0.066 3.934 18 H 0.088 0.912 19 C -0.162 4.162 20 N -0.545 5.545 21 C 0.017 3.983 22 C 0.067 3.933 23 H 0.023 0.977 24 H 0.037 0.963 25 H 0.036 0.964 26 H 0.263 0.737 27 H 0.333 0.667 28 H 0.054 0.946 29 H 0.013 0.987 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.052 0.948 35 H 0.031 0.969 36 H 0.061 0.939 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.041 -2.410 17.007 17.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.105 3.895 3 H -0.011 1.011 4 C -0.577 4.577 5 H 0.078 0.922 6 C -0.184 4.184 7 N -0.559 5.559 8 Si 0.785 3.215 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.191 1.191 12 N -0.313 5.313 13 C -0.053 4.053 14 C -0.106 4.106 15 H 0.097 0.903 16 C -0.168 4.168 17 C -0.042 4.042 18 H 0.106 0.894 19 C -0.220 4.220 20 N -0.269 5.269 21 C -0.131 4.131 22 C -0.061 4.061 23 H 0.042 0.958 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.150 0.850 28 H 0.073 0.927 29 H 0.031 0.969 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 0.682 -2.956 17.125 17.391 hybrid contribution 0.179 1.039 -1.532 1.859 sum 0.861 -1.917 15.593 15.734 Atomic orbital electron populations 1.21462 0.97935 0.98769 0.98246 1.18913 0.92417 0.91081 0.87120 1.01092 1.21553 1.36104 1.08285 0.91757 0.92180 1.25732 0.95076 0.95490 1.02122 1.70095 1.45892 1.15412 1.24538 0.85545 0.78812 0.78541 0.78589 1.20015 1.21029 1.19099 1.60634 1.32234 1.33186 1.05242 1.21838 0.98983 0.93561 0.90921 1.22192 0.99090 0.95815 0.93513 0.90319 1.22899 1.02900 0.97567 0.93402 1.22479 0.99061 0.88149 0.94489 0.89378 1.22301 0.99586 1.01646 0.98483 1.63765 1.25338 1.35021 1.02787 1.22616 0.90702 1.00200 0.99582 1.22794 0.96938 0.98520 0.87831 0.95805 0.94393 0.94484 0.92837 0.85009 0.92731 0.96899 0.91492 0.89782 0.90977 0.91070 0.92931 0.95075 0.92021 0.89772 0.91188 0.94673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.28 9.27 71.98 0.67 -4.61 16 2 C 0.21 11.04 2.47 44.17 0.11 11.15 16 3 H -0.03 -1.66 7.74 -2.39 -0.02 -1.68 16 4 C -0.54 -29.93 8.48 25.60 0.22 -29.71 16 5 H 0.06 3.27 7.69 -2.91 -0.02 3.25 16 6 C 0.02 0.85 5.17 84.65 0.44 1.29 16 7 N -0.92 -54.00 12.16 21.45 0.26 -53.74 16 8 Si 0.96 43.81 29.55 68.60 2.03 45.83 16 9 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 12 N -0.68 -29.13 6.12 -495.46 -3.03 -32.16 16 13 C 0.08 2.77 4.93 86.30 0.43 3.20 16 14 C -0.09 -2.50 3.22 -9.41 -0.03 -2.53 16 15 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 16 C -0.13 -2.99 5.94 31.78 0.19 -2.80 16 17 C 0.07 1.39 4.02 45.26 0.18 1.57 16 18 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 19 C -0.16 -2.70 7.84 71.98 0.56 -2.13 16 20 N -0.54 -13.44 5.44 -886.52 -4.83 -18.27 16 21 C 0.02 0.35 8.29 127.69 1.06 1.41 16 22 C 0.07 1.93 6.02 86.77 0.52 2.46 16 23 H 0.02 1.06 7.55 -2.39 -0.02 1.04 16 24 H 0.04 2.05 6.83 -2.39 -0.02 2.03 16 25 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 26 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 27 H 0.33 14.00 8.26 -89.69 -0.74 13.26 16 28 H 0.05 2.02 7.47 -2.39 -0.02 2.01 16 29 H 0.01 0.48 8.05 -2.39 -0.02 0.46 16 30 H 0.07 1.57 7.75 -2.39 -0.02 1.56 16 31 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.07 1.05 6.67 -2.39 -0.02 1.03 16 33 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.05 0.95 6.64 -2.39 -0.02 0.93 16 35 H 0.03 0.63 6.44 -2.39 -0.02 0.62 16 36 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.08 1.41 6.74 -2.39 -0.02 1.39 16 38 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.03 1.09 7.65 -2.39 -0.02 1.07 16 Total: -1.00 -59.96 301.03 -0.97 -60.92 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: 0.26 Total: 18.13 kcal Atomic # 6 Polarization: -25.05 SS G_CDS: 4.34 Total: -20.71 kcal Atomic # 7 Polarization: -96.57 SS G_CDS: -7.60 Total: -104.17 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -59.96 -0.97 -60.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396547566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.374 kcal (2) G-P(sol) polarization free energy of solvation -59.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds