Wall clock time and date at job start Mon Mar 30 2020 03:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47356 * 2 1 4 4 C 1.50695 * 109.47261 * 239.99641 * 2 1 3 5 5 H 1.08002 * 120.00262 * 240.00202 * 4 2 1 6 6 C 1.37881 * 119.99815 * 60.00346 * 4 2 1 7 7 N 1.31517 * 119.99938 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99914 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47233 * 60.00118 * 8 6 4 10 10 H 1.48506 * 109.46832 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47248 * 299.99578 * 8 6 4 12 12 N 1.46904 * 109.47308 * 119.99885 * 2 1 3 13 13 C 1.46899 * 111.00029 * 275.00154 * 12 2 1 14 14 C 1.52997 * 109.47254 * 179.97438 * 13 12 2 15 15 H 1.09007 * 110.28841 * 304.33041 * 14 13 12 16 16 C 1.54261 * 110.32744 * 182.09144 * 14 13 12 17 17 C 1.54383 * 105.05972 * 241.10544 * 16 14 13 18 18 H 1.09000 * 110.51354 * 94.97372 * 17 16 14 19 19 C 1.53001 * 110.41019 * 217.36694 * 17 16 14 20 20 N 1.48566 * 104.59417 * 336.14506 * 17 16 14 21 21 C 1.46897 * 111.00116 * 159.04307 * 20 17 16 22 22 C 1.48563 * 104.22079 * 39.48176 * 20 17 16 23 23 H 1.09001 * 109.46997 * 300.00072 * 1 2 3 24 24 H 1.08999 * 109.47404 * 60.00168 * 1 2 3 25 25 H 1.09004 * 109.47538 * 180.02562 * 1 2 3 26 26 H 0.97001 * 120.00067 * 180.02562 * 7 6 4 27 27 H 1.00908 * 110.99583 * 38.95067 * 12 2 1 28 28 H 1.09002 * 109.47043 * 299.99792 * 13 12 2 29 29 H 1.09001 * 109.47354 * 59.99854 * 13 12 2 30 30 H 1.09004 * 110.31832 * 359.97438 * 16 14 13 31 31 H 1.08998 * 110.32707 * 122.20787 * 16 14 13 32 32 H 1.09001 * 109.47048 * 176.62576 * 19 17 16 33 33 H 1.08999 * 109.46812 * 296.62304 * 19 17 16 34 34 H 1.09000 * 109.47124 * 56.62368 * 19 17 16 35 35 H 1.09000 * 109.46883 * 304.45675 * 21 20 17 36 36 H 1.09001 * 109.47140 * 64.45091 * 21 20 17 37 37 H 1.08995 * 109.47388 * 184.45226 * 21 20 17 38 38 H 1.08998 * 110.40656 * 201.73378 * 22 20 17 39 39 H 1.08998 * 110.50935 * 79.35038 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.8257 -2.5203 -4.0076 10 1 1.8260 -0.4207 -5.2204 11 1 3.8063 -1.1210 -4.0081 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5950 -0.5331 3.5745 15 1 1.9707 -1.4051 3.7694 16 6 2.6193 0.3971 4.8049 17 6 4.1005 0.4530 5.2363 18 1 4.5926 1.3226 4.8008 19 6 4.2109 0.4871 6.7620 20 7 4.6937 -0.7998 4.7018 21 6 6.1533 -0.6831 4.5848 22 6 4.0636 -0.9610 3.3661 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.7081 1.1608 -3.4844 27 1 1.4494 -1.4979 1.4101 28 1 2.7588 1.0462 2.1182 29 1 1.0870 0.6163 2.5526 30 1 2.2663 1.3922 4.5340 31 1 2.0071 -0.0181 5.6055 32 1 5.2618 0.4660 7.0508 33 1 3.7488 1.3993 7.1393 34 1 3.7010 -0.3795 7.1827 35 1 6.4005 0.1844 3.9728 36 1 6.5890 -0.5638 5.5768 37 1 6.5536 -1.5830 4.1180 38 1 4.1146 -2.0013 3.0449 39 1 4.5480 -0.3140 2.6348 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396547567.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:22 Heat of formation + Delta-G solvation = -6.792750 kcal Electronic energy + Delta-G solvation = -16119.079934 eV Core-core repulsion = 13674.934834 eV Total energy + Delta-G solvation = -2444.145100 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.20247 -36.00400 -33.22363 -31.84671 -31.20641 -28.20096 -25.97634 -25.23715 -24.97137 -22.92125 -20.29767 -20.20090 -19.65049 -16.34684 -15.51919 -15.37078 -14.70100 -14.62597 -14.07559 -13.84515 -13.53856 -13.11704 -12.58879 -12.45255 -12.11239 -11.83116 -11.66818 -11.45046 -11.15323 -11.03676 -11.00303 -10.89307 -10.79758 -10.49404 -10.38161 -10.16794 -10.08158 -9.72539 -8.97337 -8.37886 -8.33724 -7.18377 -5.96077 -3.99287 3.35861 3.39554 3.43095 4.11854 4.45568 4.72258 4.81158 5.07081 5.24769 5.35319 5.36238 5.45027 5.51449 5.57933 5.68651 5.72176 5.84897 5.89784 5.97201 6.03079 6.07286 6.16300 6.26587 6.30454 6.44395 6.64114 6.71850 6.86948 7.00790 7.13000 7.16444 7.40363 7.76363 7.91102 8.30718 8.57917 8.65712 9.07828 9.65991 11.10951 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.041944 B = 0.005516 C = 0.005067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.403770 B = 5074.893406 C = 5524.245567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.211 3.789 3 H 0.031 0.969 4 C -0.494 4.494 5 H 0.061 0.939 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.683 5.683 13 C 0.068 3.932 14 C -0.088 4.088 15 H 0.074 0.926 16 C -0.116 4.116 17 C 0.055 3.945 18 H 0.049 0.951 19 C -0.134 4.134 20 N -0.518 5.518 21 C 0.015 3.985 22 C 0.052 3.948 23 H 0.004 0.996 24 H 0.088 0.912 25 H 0.027 0.973 26 H 0.260 0.740 27 H 0.324 0.676 28 H 0.061 0.939 29 H 0.019 0.981 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.026 0.974 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.864 -0.478 14.719 15.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.103 3.897 3 H 0.049 0.951 4 C -0.533 4.533 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.203 1.203 12 N -0.313 5.313 13 C -0.062 4.062 14 C -0.107 4.107 15 H 0.092 0.908 16 C -0.154 4.154 17 C -0.053 4.053 18 H 0.067 0.933 19 C -0.192 4.192 20 N -0.243 5.243 21 C -0.134 4.134 22 C -0.075 4.075 23 H 0.023 0.977 24 H 0.107 0.893 25 H 0.046 0.954 26 H 0.069 0.931 27 H 0.141 0.859 28 H 0.080 0.920 29 H 0.037 0.963 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.045 0.955 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.375 -0.733 14.745 15.711 hybrid contribution -0.470 0.431 -1.267 1.418 sum 4.906 -0.302 13.478 14.346 Atomic orbital electron populations 1.22423 1.00789 0.99153 1.00400 1.19152 0.89544 0.94325 0.86642 0.95103 1.21133 1.30138 1.12373 0.89644 0.92029 1.24957 0.95374 0.95218 0.99032 1.69878 1.37345 1.23265 1.23382 0.86571 0.79145 0.79624 0.82079 1.20370 1.21490 1.20338 1.60805 1.57972 1.09045 1.03458 1.22000 0.98108 0.95665 0.90465 1.21900 0.96509 0.98194 0.94122 0.90791 1.22410 0.95292 0.99969 0.97741 1.22660 0.95283 0.91642 0.95712 0.93275 1.21701 1.01446 1.01646 0.94380 1.65381 1.04497 1.32729 1.21655 1.22469 0.89102 1.00801 1.01039 1.23019 0.93615 1.02066 0.88846 0.97699 0.89338 0.95361 0.93067 0.85930 0.92049 0.96298 0.91360 0.91226 0.93076 0.92566 0.91951 0.95494 0.91810 0.91395 0.90041 0.93014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.09 8.94 37.15 0.33 -3.76 16 2 C 0.21 5.35 2.57 -68.87 -0.18 5.17 16 3 H 0.03 0.86 7.80 -51.93 -0.40 0.46 16 4 C -0.49 -13.77 8.84 -34.44 -0.30 -14.08 16 5 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -25.95 11.32 55.43 0.63 -25.32 16 8 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 N -0.68 -14.44 6.03 -107.96 -0.65 -15.09 16 13 C 0.07 1.22 4.58 -3.83 -0.02 1.20 16 14 C -0.09 -1.30 3.25 -89.24 -0.29 -1.59 16 15 H 0.07 1.10 8.14 -51.92 -0.42 0.67 16 16 C -0.12 -1.47 6.20 -25.35 -0.16 -1.62 16 17 C 0.06 0.68 2.89 -66.06 -0.19 0.49 16 18 H 0.05 0.62 7.90 -51.93 -0.41 0.21 16 19 C -0.13 -1.35 9.35 37.16 0.35 -1.01 16 20 N -0.52 -6.96 5.34 -230.34 -1.23 -8.19 16 21 C 0.01 0.17 9.42 60.06 0.57 0.74 16 22 C 0.05 0.78 5.84 -2.18 -0.01 0.77 16 23 H 0.00 0.09 7.45 -51.93 -0.39 -0.30 16 24 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 25 H 0.03 0.65 8.13 -51.93 -0.42 0.23 16 26 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 27 H 0.32 6.55 8.47 -39.29 -0.33 6.22 16 28 H 0.06 1.16 7.97 -51.93 -0.41 0.74 16 29 H 0.02 0.34 7.44 -51.93 -0.39 -0.04 16 30 H 0.07 0.85 7.71 -51.93 -0.40 0.45 16 31 H 0.07 0.82 7.84 -51.93 -0.41 0.41 16 32 H 0.05 0.49 7.54 -51.93 -0.39 0.09 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 35 H 0.03 0.32 7.97 -51.93 -0.41 -0.10 16 36 H 0.06 0.65 7.53 -51.93 -0.39 0.26 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.05 0.87 7.63 -51.93 -0.40 0.47 16 LS Contribution 304.99 15.07 4.60 4.60 Total: -1.00 -28.33 304.99 -8.81 -37.14 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -7.13 Total: 2.49 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: 0.00 Total: -12.27 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: -1.25 Total: -48.60 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.33 -8.81 -37.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396547567.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.348 kcal (2) G-P(sol) polarization free energy of solvation -28.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds