Wall clock time and date at job start Mon Mar 30 2020 03:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47356 * 2 1 4 4 C 1.50695 * 109.47261 * 239.99641 * 2 1 3 5 5 H 1.08002 * 120.00262 * 240.00202 * 4 2 1 6 6 C 1.37881 * 119.99815 * 60.00346 * 4 2 1 7 7 N 1.31517 * 119.99938 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99914 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47233 * 60.00118 * 8 6 4 10 10 H 1.48506 * 109.46832 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47248 * 299.99578 * 8 6 4 12 12 N 1.46904 * 109.47308 * 119.99885 * 2 1 3 13 13 C 1.46899 * 111.00029 * 275.00154 * 12 2 1 14 14 C 1.52997 * 109.47254 * 179.97438 * 13 12 2 15 15 H 1.09007 * 110.28841 * 304.33041 * 14 13 12 16 16 C 1.54261 * 110.32744 * 182.09144 * 14 13 12 17 17 C 1.54383 * 105.05972 * 241.10544 * 16 14 13 18 18 H 1.09000 * 110.51354 * 94.97372 * 17 16 14 19 19 C 1.53001 * 110.41019 * 217.36694 * 17 16 14 20 20 N 1.48566 * 104.59417 * 336.14506 * 17 16 14 21 21 C 1.46897 * 111.00116 * 159.04307 * 20 17 16 22 22 C 1.48563 * 104.22079 * 39.48176 * 20 17 16 23 23 H 1.09001 * 109.46997 * 300.00072 * 1 2 3 24 24 H 1.08999 * 109.47404 * 60.00168 * 1 2 3 25 25 H 1.09004 * 109.47538 * 180.02562 * 1 2 3 26 26 H 0.97001 * 120.00067 * 180.02562 * 7 6 4 27 27 H 1.00908 * 110.99583 * 38.95067 * 12 2 1 28 28 H 1.09002 * 109.47043 * 299.99792 * 13 12 2 29 29 H 1.09001 * 109.47354 * 59.99854 * 13 12 2 30 30 H 1.09004 * 110.31832 * 359.97438 * 16 14 13 31 31 H 1.08998 * 110.32707 * 122.20787 * 16 14 13 32 32 H 1.09001 * 109.47048 * 176.62576 * 19 17 16 33 33 H 1.08999 * 109.46812 * 296.62304 * 19 17 16 34 34 H 1.09000 * 109.47124 * 56.62368 * 19 17 16 35 35 H 1.09000 * 109.46883 * 304.45675 * 21 20 17 36 36 H 1.09001 * 109.47140 * 64.45091 * 21 20 17 37 37 H 1.08995 * 109.47388 * 184.45226 * 21 20 17 38 38 H 1.08998 * 110.40656 * 201.73378 * 22 20 17 39 39 H 1.08998 * 110.50935 * 79.35038 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.8257 -2.5203 -4.0076 10 1 1.8260 -0.4207 -5.2204 11 1 3.8063 -1.1210 -4.0081 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5950 -0.5331 3.5745 15 1 1.9707 -1.4051 3.7694 16 6 2.6193 0.3971 4.8049 17 6 4.1005 0.4530 5.2363 18 1 4.5926 1.3226 4.8008 19 6 4.2109 0.4871 6.7620 20 7 4.6937 -0.7998 4.7018 21 6 6.1533 -0.6831 4.5848 22 6 4.0636 -0.9610 3.3661 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.7081 1.1608 -3.4844 27 1 1.4494 -1.4979 1.4101 28 1 2.7588 1.0462 2.1182 29 1 1.0870 0.6163 2.5526 30 1 2.2663 1.3922 4.5340 31 1 2.0071 -0.0181 5.6055 32 1 5.2618 0.4660 7.0508 33 1 3.7488 1.3993 7.1393 34 1 3.7010 -0.3795 7.1827 35 1 6.4005 0.1844 3.9728 36 1 6.5890 -0.5638 5.5768 37 1 6.5536 -1.5830 4.1180 38 1 4.1146 -2.0013 3.0449 39 1 4.5480 -0.3140 2.6348 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396547567.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:22 Heat of formation + Delta-G solvation = -25.914904 kcal Electronic energy + Delta-G solvation = -16119.909133 eV Core-core repulsion = 13674.934834 eV Total energy + Delta-G solvation = -2444.974299 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.32514 -37.74586 -34.94896 -33.23809 -32.45072 -29.88591 -27.29009 -27.00902 -26.27944 -24.25509 -22.14285 -21.41568 -20.82345 -18.35679 -16.83840 -16.74423 -16.41170 -15.84946 -15.51907 -15.14559 -15.04296 -14.40913 -14.24388 -13.61276 -13.32993 -13.21555 -13.15465 -12.91422 -12.79246 -12.70711 -12.45061 -12.19286 -12.17401 -12.01586 -11.95070 -11.78869 -11.45498 -11.34046 -10.97800 -10.48270 -9.45917 -8.93960 -8.09391 -6.20703 1.43335 1.45022 1.52813 2.44217 3.07898 3.18767 3.51158 3.70451 3.92551 4.11120 4.17319 4.41858 4.51055 4.53642 4.55358 4.69383 4.70885 4.75706 4.83048 4.86008 4.89726 4.96397 4.98774 5.03436 5.10602 5.14192 5.25204 5.37718 5.41488 5.43988 5.69268 5.81754 5.93433 6.13396 6.27671 6.65672 6.84335 6.95342 7.49415 8.95990 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.041944 B = 0.005516 C = 0.005067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.403770 B = 5074.893406 C = 5524.245567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.216 3.784 3 H -0.003 1.003 4 C -0.515 4.515 5 H 0.055 0.945 6 C 0.008 3.992 7 N -0.924 5.924 8 Si 0.961 3.039 9 H -0.270 1.270 10 H -0.284 1.284 11 H -0.275 1.275 12 N -0.685 5.685 13 C 0.074 3.926 14 C -0.081 4.081 15 H 0.079 0.921 16 C -0.111 4.111 17 C 0.053 3.947 18 H 0.043 0.957 19 C -0.128 4.128 20 N -0.521 5.521 21 C 0.014 3.986 22 C 0.056 3.944 23 H 0.024 0.976 24 H 0.061 0.939 25 H 0.033 0.967 26 H 0.261 0.739 27 H 0.332 0.668 28 H 0.045 0.955 29 H 0.022 0.978 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.021 0.979 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.146 -1.083 15.928 16.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.107 3.893 3 H 0.015 0.985 4 C -0.554 4.554 5 H 0.073 0.927 6 C -0.190 4.190 7 N -0.564 5.564 8 Si 0.787 3.213 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.200 1.200 12 N -0.315 5.315 13 C -0.056 4.056 14 C -0.101 4.101 15 H 0.098 0.902 16 C -0.150 4.150 17 C -0.056 4.056 18 H 0.061 0.939 19 C -0.185 4.185 20 N -0.246 5.246 21 C -0.135 4.135 22 C -0.072 4.072 23 H 0.043 0.957 24 H 0.079 0.921 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.149 0.851 28 H 0.064 0.936 29 H 0.040 0.960 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.040 0.960 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 5.663 -1.343 15.979 17.006 hybrid contribution -0.536 0.646 -1.603 1.809 sum 5.127 -0.697 14.377 15.279 Atomic orbital electron populations 1.22228 0.99980 0.99282 0.99991 1.18917 0.90049 0.92522 0.87822 0.98489 1.21433 1.30407 1.12449 0.91073 0.92722 1.25731 0.95473 0.95883 1.01925 1.70008 1.38055 1.24331 1.24016 0.85569 0.78579 0.78727 0.78459 1.19560 1.20985 1.20004 1.60659 1.57769 1.09566 1.03473 1.21981 0.97996 0.95094 0.90490 1.21817 0.96169 0.98515 0.93568 0.90226 1.22414 0.96054 0.99577 0.96937 1.22758 0.94681 0.90845 0.97287 0.93876 1.21661 1.02138 1.02422 0.92306 1.65411 1.05455 1.33562 1.20139 1.22529 0.88148 1.00679 1.02140 1.22882 0.93884 1.00972 0.89486 0.95688 0.92060 0.94815 0.93030 0.85098 0.93599 0.96034 0.91118 0.89605 0.92396 0.91066 0.91952 0.96033 0.89875 0.91237 0.90831 0.95324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.56 8.94 71.98 0.64 -6.92 16 2 C 0.22 11.08 2.57 44.16 0.11 11.20 16 3 H 0.00 -0.16 7.80 -2.39 -0.02 -0.18 16 4 C -0.51 -29.01 8.84 25.60 0.23 -28.78 16 5 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 6 C 0.01 0.44 5.30 84.66 0.45 0.89 16 7 N -0.92 -53.92 11.32 21.45 0.24 -53.68 16 8 Si 0.96 44.42 29.54 68.60 2.03 46.45 16 9 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 12 N -0.68 -29.02 6.03 -495.47 -2.99 -32.01 16 13 C 0.07 2.64 4.58 86.30 0.40 3.04 16 14 C -0.08 -2.33 3.25 -9.90 -0.03 -2.36 16 15 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 16 C -0.11 -2.61 6.20 31.49 0.20 -2.41 16 17 C 0.05 1.19 2.89 45.06 0.13 1.32 16 18 H 0.04 1.03 7.90 -2.39 -0.02 1.01 16 19 C -0.13 -2.22 9.35 71.98 0.67 -1.54 16 20 N -0.52 -13.26 5.34 -882.68 -4.71 -17.98 16 21 C 0.01 0.30 9.42 127.69 1.20 1.50 16 22 C 0.06 1.66 5.84 86.45 0.51 2.17 16 23 H 0.02 1.07 7.45 -2.39 -0.02 1.05 16 24 H 0.06 3.33 6.07 -2.39 -0.01 3.32 16 25 H 0.03 1.55 8.13 -2.39 -0.02 1.53 16 26 H 0.26 14.51 8.31 -92.71 -0.77 13.73 16 27 H 0.33 13.22 8.47 -89.69 -0.76 12.46 16 28 H 0.05 1.76 7.97 -2.39 -0.02 1.74 16 29 H 0.02 0.76 7.44 -2.39 -0.02 0.74 16 30 H 0.07 1.63 7.71 -2.38 -0.02 1.61 16 31 H 0.09 1.76 7.84 -2.39 -0.02 1.74 16 32 H 0.06 0.93 7.54 -2.39 -0.02 0.91 16 33 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.06 1.10 8.12 -2.39 -0.02 1.08 16 35 H 0.02 0.49 7.97 -2.39 -0.02 0.47 16 36 H 0.08 1.50 7.53 -2.39 -0.02 1.49 16 37 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.07 2.28 8.14 -2.39 -0.02 2.27 16 39 H 0.03 0.98 7.63 -2.39 -0.02 0.96 16 Total: -1.00 -60.05 304.99 -0.70 -60.74 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 0.23 Total: 18.37 kcal Atomic # 6 Polarization: -26.40 SS G_CDS: 4.50 Total: -21.90 kcal Atomic # 7 Polarization: -96.21 SS G_CDS: -7.46 Total: -103.66 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -60.05 -0.70 -60.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396547567.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.828 kcal (2) G-P(sol) polarization free energy of solvation -60.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds