Wall clock time and date at job start Mon Mar 30 2020 03:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47205 * 2 1 4 4 C 1.50698 * 109.47190 * 239.99683 * 2 1 3 5 5 H 1.07999 * 120.00205 * 245.58298 * 4 2 1 6 6 C 1.37876 * 120.00080 * 65.58653 * 4 2 1 7 7 N 1.31514 * 120.00444 * 198.54265 * 6 4 2 8 8 Si 1.86803 * 119.99846 * 18.54498 * 6 4 2 9 9 H 1.48500 * 109.47160 * 180.02562 * 8 6 4 10 10 H 1.48497 * 109.47397 * 59.99471 * 8 6 4 11 11 H 1.48503 * 109.46897 * 299.99822 * 8 6 4 12 12 N 1.46904 * 109.46637 * 119.99806 * 2 1 3 13 13 C 1.46899 * 110.99904 * 58.95583 * 12 2 1 14 14 C 1.46896 * 111.00396 * 294.99965 * 12 2 1 15 15 H 1.09000 * 109.50030 * 59.92104 * 14 12 2 16 16 C 1.53039 * 109.50276 * 299.80959 * 14 12 2 17 17 N 1.46847 * 109.52167 * 180.88041 * 16 14 12 18 18 C 1.46844 * 111.20294 * 61.73437 * 17 16 14 19 19 C 1.53037 * 109.52396 * 298.26300 * 18 17 16 20 20 H 1.08999 * 109.50197 * 179.12014 * 19 18 17 21 21 C 1.53003 * 109.53376 * 299.21137 * 19 18 17 22 22 C 1.53111 * 109.28022 * 59.17611 * 19 18 17 23 23 H 1.08994 * 109.47618 * 294.95165 * 1 2 3 24 24 H 1.09007 * 109.46778 * 54.95676 * 1 2 3 25 25 H 1.09005 * 109.47273 * 174.95247 * 1 2 3 26 26 H 0.97002 * 119.99343 * 354.96276 * 7 6 4 27 27 H 1.09001 * 109.47353 * 60.00005 * 13 12 2 28 28 H 1.09006 * 109.47256 * 179.97438 * 13 12 2 29 29 H 1.08994 * 109.47448 * 299.99886 * 13 12 2 30 30 H 1.09001 * 109.46004 * 300.88889 * 16 14 12 31 31 H 1.08995 * 109.46433 * 60.85989 * 16 14 12 32 32 H 1.00900 * 111.00122 * 185.83778 * 17 16 14 33 33 H 1.09000 * 109.46222 * 178.23893 * 18 17 16 34 34 H 1.09002 * 109.45624 * 58.27458 * 18 17 16 35 35 H 1.08994 * 109.47036 * 179.82716 * 21 19 18 36 36 H 1.09000 * 109.47199 * 299.82684 * 21 19 18 37 37 H 1.09001 * 109.46748 * 59.82863 * 21 19 18 38 38 H 1.09004 * 109.52324 * 182.44185 * 22 19 18 39 39 H 1.08999 * 109.57512 * 62.28415 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5769 -1.6381 -1.1338 6 6 1.7969 -0.1762 -2.4794 7 7 1.8957 -0.9353 -3.5488 8 14 1.3374 1.6262 -2.6528 9 1 1.1378 1.9502 -4.0882 10 1 2.4276 2.4702 -2.1012 11 1 0.0810 1.8907 -1.9067 12 7 2.0196 -0.6925 1.1995 13 6 1.5282 -2.0761 1.2460 14 6 1.6486 0.0391 2.4181 15 1 0.5632 0.1192 2.4783 16 6 2.2636 1.4400 2.3802 17 7 1.9105 2.1643 3.6078 18 6 2.4457 1.4879 4.7962 19 6 1.8361 0.0885 4.9061 20 1 2.2454 -0.4191 5.7796 21 6 0.3168 0.2019 5.0466 22 6 2.1746 -0.7110 3.6449 23 1 -0.3634 0.4335 0.9317 24 1 -0.3633 0.5901 -0.8414 25 1 -0.3634 -1.0237 -0.0904 26 1 2.2049 -1.8510 -3.4665 27 1 1.8761 -2.6151 0.3648 28 1 1.9058 -2.5658 2.1437 29 1 0.4384 -2.0742 1.2639 30 1 3.3480 1.3586 2.3058 31 1 1.8801 1.9818 1.5157 32 1 2.2240 3.1225 3.5652 33 1 2.1945 2.0645 5.6864 34 1 3.5293 1.4062 4.7104 35 1 -0.1166 -0.7953 5.1218 36 1 0.0764 0.7711 5.9446 37 1 -0.0918 0.7108 4.1736 38 1 1.7059 -1.6936 3.6997 39 1 3.2555 -0.8269 3.5652 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401949374.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:25 Heat of formation + Delta-G solvation = 4.896139 kcal Electronic energy + Delta-G solvation = -17106.301231 eV Core-core repulsion = 14662.662999 eV Total energy + Delta-G solvation = -2443.638232 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.37810 -36.49527 -32.89791 -32.58573 -30.29121 -28.71324 -26.59039 -25.17835 -24.75690 -22.76111 -21.78935 -19.16388 -18.23132 -17.33483 -16.57382 -15.16335 -14.37147 -14.18110 -13.96413 -13.92803 -13.60066 -13.35867 -13.13668 -12.52265 -12.18113 -11.86662 -11.63702 -11.50681 -11.40951 -11.19884 -10.82109 -10.78282 -10.59977 -10.25649 -10.11097 -10.02083 -9.66103 -9.47858 -8.89393 -8.27025 -8.09677 -7.22821 -6.41617 -3.98580 3.39172 3.44154 3.61257 4.28087 4.51628 4.80198 4.98577 5.11373 5.14135 5.31422 5.45843 5.52247 5.68114 5.75773 5.85795 5.87372 6.04151 6.06048 6.14107 6.21127 6.26117 6.30535 6.39619 6.42854 6.48243 6.52541 6.66286 6.74759 6.81175 7.01476 7.19339 7.35307 7.50946 7.80366 8.12218 8.38993 8.50692 9.02652 9.67975 10.99223 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.038135 B = 0.008410 C = 0.007609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.053050 B = 3328.648305 C = 3679.045990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.186 3.814 3 H 0.032 0.968 4 C -0.586 4.586 5 H 0.063 0.937 6 C 0.029 3.971 7 N -0.909 5.909 8 Si 1.042 2.958 9 H -0.286 1.286 10 H -0.283 1.283 11 H -0.275 1.275 12 N -0.525 5.525 13 C 0.036 3.964 14 C 0.082 3.918 15 H 0.047 0.953 16 C 0.064 3.936 17 N -0.689 5.689 18 C 0.063 3.937 19 C -0.089 4.089 20 H 0.067 0.933 21 C -0.138 4.138 22 C -0.111 4.111 23 H 0.025 0.975 24 H 0.056 0.944 25 H 0.047 0.953 26 H 0.266 0.734 27 H 0.073 0.927 28 H 0.046 0.954 29 H 0.016 0.984 30 H 0.037 0.963 31 H 0.077 0.923 32 H 0.340 0.660 33 H 0.068 0.932 34 H 0.027 0.973 35 H 0.044 0.956 36 H 0.046 0.954 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.918 4.049 15.742 16.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.078 3.922 3 H 0.050 0.950 4 C -0.624 4.624 5 H 0.081 0.919 6 C -0.175 4.175 7 N -0.543 5.543 8 Si 0.871 3.129 9 H -0.212 1.212 10 H -0.210 1.210 11 H -0.202 1.202 12 N -0.248 5.248 13 C -0.112 4.112 14 C -0.027 4.027 15 H 0.065 0.935 16 C -0.065 4.065 17 N -0.320 5.320 18 C -0.066 4.066 19 C -0.108 4.108 20 H 0.085 0.915 21 C -0.196 4.196 22 C -0.149 4.149 23 H 0.044 0.956 24 H 0.074 0.926 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.092 0.908 28 H 0.065 0.935 29 H 0.035 0.965 30 H 0.055 0.945 31 H 0.095 0.905 32 H 0.157 0.843 33 H 0.087 0.913 34 H 0.046 0.954 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.453 4.882 14.640 15.501 hybrid contribution 0.544 -0.979 1.045 1.532 sum -0.908 3.903 15.685 16.189 Atomic orbital electron populations 1.22852 1.01496 1.01001 0.99262 1.19638 0.89114 0.94766 0.88682 0.94997 1.21974 1.39778 1.10224 0.90471 0.91903 1.25655 0.94776 1.04948 0.92158 1.70867 1.42476 1.09354 1.31629 0.84094 0.77004 0.75787 0.75989 1.21202 1.20991 1.20151 1.62244 1.59371 1.01879 1.01329 1.22242 0.96978 0.90822 1.01186 1.21582 0.97807 0.92635 0.90672 0.93491 1.21976 0.98396 0.94701 0.91445 1.60209 1.64025 1.05357 1.02404 1.21917 0.96156 0.95283 0.93268 1.21159 0.96776 0.95095 0.97754 0.91456 1.21747 0.94989 1.00700 1.02134 1.21730 1.01225 0.98374 0.93529 0.95615 0.92552 0.93359 0.92339 0.90825 0.93508 0.96518 0.94474 0.90452 0.84262 0.91337 0.95447 0.93698 0.93494 0.91109 0.91935 0.91794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.22 8.13 37.16 0.30 -3.92 16 2 C 0.19 4.43 1.67 -68.86 -0.12 4.32 16 3 H 0.03 0.78 4.71 -51.93 -0.24 0.54 16 4 C -0.59 -16.43 8.31 -34.44 -0.29 -16.72 16 5 H 0.06 1.91 6.78 -52.49 -0.36 1.55 16 6 C 0.03 0.85 5.34 -17.82 -0.10 0.75 16 7 N -0.91 -27.95 13.70 55.43 0.76 -27.19 16 8 Si 1.04 25.30 26.45 -169.99 -4.50 20.80 16 9 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.27 -6.20 5.54 56.52 0.31 -5.88 16 12 N -0.52 -11.10 4.61 -228.20 -1.05 -12.16 16 13 C 0.04 0.72 8.52 60.06 0.51 1.23 16 14 C 0.08 1.45 1.47 -67.64 -0.10 1.35 16 15 H 0.05 0.88 4.78 -51.93 -0.25 0.64 16 16 C 0.06 1.07 5.59 -3.83 -0.02 1.05 16 17 N -0.69 -9.34 6.13 -113.82 -0.70 -10.04 16 18 C 0.06 0.76 5.99 -3.84 -0.02 0.74 16 19 C -0.09 -1.11 3.21 -90.54 -0.29 -1.40 16 20 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 21 C -0.14 -1.72 8.75 37.16 0.33 -1.39 16 22 C -0.11 -1.66 4.35 -26.61 -0.12 -1.78 16 23 H 0.02 0.52 6.29 -51.93 -0.33 0.19 16 24 H 0.06 1.31 4.88 -51.93 -0.25 1.06 16 25 H 0.05 1.10 6.67 -51.93 -0.35 0.76 16 26 H 0.27 8.18 8.73 -40.82 -0.36 7.83 16 27 H 0.07 1.63 6.43 -51.93 -0.33 1.30 16 28 H 0.05 0.81 6.07 -51.93 -0.32 0.49 16 29 H 0.02 0.33 6.40 -51.93 -0.33 -0.01 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.08 1.41 6.35 -51.93 -0.33 1.08 16 32 H 0.34 3.93 8.90 -39.29 -0.35 3.58 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 1.02 6.02 -51.93 -0.31 0.71 16 38 H 0.06 0.93 6.41 -51.93 -0.33 0.59 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 278.38 15.07 4.20 4.20 Total: -1.00 -29.52 278.38 -7.48 -37.00 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -6.28 Total: 3.15 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: 0.09 Total: -15.77 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: -0.99 Total: -49.38 kcal Atomic # 14 Polarization: 25.30 SS G_CDS: -4.50 Total: 20.80 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.52 -7.48 -37.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401949374.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.901 kcal (2) G-P(sol) polarization free energy of solvation -29.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds