Wall clock time and date at job start Mon Mar 30 2020 03:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47205 * 2 1 4 4 C 1.50698 * 109.47190 * 239.99683 * 2 1 3 5 5 H 1.07999 * 120.00205 * 245.58298 * 4 2 1 6 6 C 1.37876 * 120.00080 * 65.58653 * 4 2 1 7 7 N 1.31514 * 120.00444 * 198.54265 * 6 4 2 8 8 Si 1.86803 * 119.99846 * 18.54498 * 6 4 2 9 9 H 1.48500 * 109.47160 * 180.02562 * 8 6 4 10 10 H 1.48497 * 109.47397 * 59.99471 * 8 6 4 11 11 H 1.48503 * 109.46897 * 299.99822 * 8 6 4 12 12 N 1.46904 * 109.46637 * 119.99806 * 2 1 3 13 13 C 1.46899 * 110.99904 * 58.95583 * 12 2 1 14 14 C 1.46896 * 111.00396 * 294.99965 * 12 2 1 15 15 H 1.09000 * 109.50030 * 59.92104 * 14 12 2 16 16 C 1.53039 * 109.50276 * 299.80959 * 14 12 2 17 17 N 1.46847 * 109.52167 * 180.88041 * 16 14 12 18 18 C 1.46844 * 111.20294 * 61.73437 * 17 16 14 19 19 C 1.53037 * 109.52396 * 298.26300 * 18 17 16 20 20 H 1.08999 * 109.50197 * 179.12014 * 19 18 17 21 21 C 1.53003 * 109.53376 * 299.21137 * 19 18 17 22 22 C 1.53111 * 109.28022 * 59.17611 * 19 18 17 23 23 H 1.08994 * 109.47618 * 294.95165 * 1 2 3 24 24 H 1.09007 * 109.46778 * 54.95676 * 1 2 3 25 25 H 1.09005 * 109.47273 * 174.95247 * 1 2 3 26 26 H 0.97002 * 119.99343 * 354.96276 * 7 6 4 27 27 H 1.09001 * 109.47353 * 60.00005 * 13 12 2 28 28 H 1.09006 * 109.47256 * 179.97438 * 13 12 2 29 29 H 1.08994 * 109.47448 * 299.99886 * 13 12 2 30 30 H 1.09001 * 109.46004 * 300.88889 * 16 14 12 31 31 H 1.08995 * 109.46433 * 60.85989 * 16 14 12 32 32 H 1.00900 * 111.00122 * 185.83778 * 17 16 14 33 33 H 1.09000 * 109.46222 * 178.23893 * 18 17 16 34 34 H 1.09002 * 109.45624 * 58.27458 * 18 17 16 35 35 H 1.08994 * 109.47036 * 179.82716 * 21 19 18 36 36 H 1.09000 * 109.47199 * 299.82684 * 21 19 18 37 37 H 1.09001 * 109.46748 * 59.82863 * 21 19 18 38 38 H 1.09004 * 109.52324 * 182.44185 * 22 19 18 39 39 H 1.08999 * 109.57512 * 62.28415 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5769 -1.6381 -1.1338 6 6 1.7969 -0.1762 -2.4794 7 7 1.8957 -0.9353 -3.5488 8 14 1.3374 1.6262 -2.6528 9 1 1.1378 1.9502 -4.0882 10 1 2.4276 2.4702 -2.1012 11 1 0.0810 1.8907 -1.9067 12 7 2.0196 -0.6925 1.1995 13 6 1.5282 -2.0761 1.2460 14 6 1.6486 0.0391 2.4181 15 1 0.5632 0.1192 2.4783 16 6 2.2636 1.4400 2.3802 17 7 1.9105 2.1643 3.6078 18 6 2.4457 1.4879 4.7962 19 6 1.8361 0.0885 4.9061 20 1 2.2454 -0.4191 5.7796 21 6 0.3168 0.2019 5.0466 22 6 2.1746 -0.7110 3.6449 23 1 -0.3634 0.4335 0.9317 24 1 -0.3633 0.5901 -0.8414 25 1 -0.3634 -1.0237 -0.0904 26 1 2.2049 -1.8510 -3.4665 27 1 1.8761 -2.6151 0.3648 28 1 1.9058 -2.5658 2.1437 29 1 0.4384 -2.0742 1.2639 30 1 3.3480 1.3586 2.3058 31 1 1.8801 1.9818 1.5157 32 1 2.2240 3.1225 3.5652 33 1 2.1945 2.0645 5.6864 34 1 3.5293 1.4062 4.7104 35 1 -0.1166 -0.7953 5.1218 36 1 0.0764 0.7711 5.9446 37 1 -0.0918 0.7108 4.1736 38 1 1.7059 -1.6936 3.6997 39 1 3.2555 -0.8269 3.5652 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401949374.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:24 Heat of formation + Delta-G solvation = -17.314160 kcal Electronic energy + Delta-G solvation = -17107.264342 eV Core-core repulsion = 14662.662999 eV Total energy + Delta-G solvation = -2444.601343 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.70946 -38.01251 -34.80178 -33.85457 -31.97658 -30.25746 -27.69519 -26.93291 -26.52157 -24.01844 -23.29497 -20.85594 -19.55841 -19.31041 -17.90255 -16.74861 -15.88167 -15.59827 -15.34021 -15.26569 -15.01896 -14.83788 -14.50886 -14.09401 -13.76408 -13.58315 -13.26386 -13.04021 -12.94504 -12.54915 -12.33550 -12.27685 -11.95879 -11.75509 -11.71398 -11.47445 -11.27909 -11.02105 -10.88681 -10.29370 -9.35794 -8.92348 -8.71131 -6.29441 1.44301 1.52099 1.70454 2.49201 3.03973 3.09227 3.55271 3.81050 3.94569 4.05361 4.22898 4.36493 4.44630 4.51955 4.54403 4.64223 4.70933 4.72725 4.76543 4.85087 4.86379 4.90811 4.96310 5.02439 5.12588 5.16790 5.24611 5.29519 5.34903 5.52618 5.59436 5.85268 6.03202 6.08897 6.31104 6.53904 6.65159 6.77032 7.46724 8.67663 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.038135 B = 0.008410 C = 0.007609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.053050 B = 3328.648305 C = 3679.045990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.189 3.811 3 H 0.036 0.964 4 C -0.586 4.586 5 H 0.024 0.976 6 C -0.022 4.022 7 N -0.941 5.941 8 Si 1.079 2.921 9 H -0.290 1.290 10 H -0.264 1.264 11 H -0.244 1.244 12 N -0.540 5.540 13 C 0.043 3.957 14 C 0.084 3.916 15 H 0.042 0.958 16 C 0.070 3.930 17 N -0.686 5.686 18 C 0.062 3.938 19 C -0.086 4.086 20 H 0.090 0.910 21 C -0.135 4.135 22 C -0.107 4.107 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.036 0.964 26 H 0.250 0.750 27 H 0.040 0.960 28 H 0.075 0.925 29 H 0.018 0.982 30 H 0.026 0.974 31 H 0.061 0.939 32 H 0.353 0.647 33 H 0.094 0.906 34 H 0.028 0.972 35 H 0.046 0.954 36 H 0.064 0.936 37 H 0.049 0.951 38 H 0.064 0.936 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.544 5.809 18.500 19.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.081 3.919 3 H 0.053 0.947 4 C -0.624 4.624 5 H 0.042 0.958 6 C -0.219 4.219 7 N -0.577 5.577 8 Si 0.901 3.099 9 H -0.216 1.216 10 H -0.189 1.189 11 H -0.169 1.169 12 N -0.264 5.264 13 C -0.105 4.105 14 C -0.024 4.024 15 H 0.059 0.941 16 C -0.060 4.060 17 N -0.319 5.319 18 C -0.067 4.067 19 C -0.105 4.105 20 H 0.109 0.891 21 C -0.192 4.192 22 C -0.145 4.145 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.094 0.906 29 H 0.036 0.964 30 H 0.044 0.956 31 H 0.080 0.920 32 H 0.172 0.828 33 H 0.112 0.888 34 H 0.046 0.954 35 H 0.065 0.935 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.074 6.637 17.441 18.776 hybrid contribution 0.794 -1.616 0.266 1.820 sum -1.280 5.021 17.707 18.449 Atomic orbital electron populations 1.22684 1.00207 1.00448 1.00282 1.19445 0.89857 0.94423 0.88222 0.94674 1.22173 1.38647 1.08896 0.92699 0.95785 1.27065 0.94506 1.08432 0.91928 1.71001 1.45076 1.08895 1.32772 0.83649 0.78795 0.71139 0.76300 1.21605 1.18942 1.16914 1.62145 1.59854 1.02410 1.01979 1.22150 0.96977 0.90398 1.00990 1.21649 0.97603 0.93286 0.89910 0.94065 1.21792 0.97405 0.94222 0.92599 1.60179 1.64140 1.05970 1.01577 1.22024 0.96139 0.95245 0.93331 1.21194 0.97098 0.95186 0.97001 0.89135 1.21700 0.94635 1.00905 1.01962 1.21708 1.00574 0.98625 0.93586 0.93145 0.93094 0.94458 0.94084 0.94151 0.90607 0.96374 0.95621 0.92046 0.82800 0.88753 0.95359 0.93460 0.91712 0.93228 0.91782 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.78 8.13 71.98 0.59 -7.19 16 2 C 0.19 8.95 1.67 44.17 0.07 9.02 16 3 H 0.04 1.67 4.71 -2.39 -0.01 1.66 16 4 C -0.59 -33.72 8.31 25.60 0.21 -33.51 16 5 H 0.02 1.53 6.78 -2.91 -0.02 1.51 16 6 C -0.02 -1.27 5.34 84.65 0.45 -0.82 16 7 N -0.94 -59.79 13.70 21.45 0.29 -59.50 16 8 Si 1.08 50.38 26.45 68.60 1.81 52.20 16 9 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 10 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 11 H -0.24 -10.17 5.54 99.48 0.55 -9.62 16 12 N -0.54 -22.63 4.61 -875.90 -4.04 -26.67 16 13 C 0.04 1.73 8.52 127.69 1.09 2.81 16 14 C 0.08 2.83 1.47 44.97 0.07 2.89 16 15 H 0.04 1.46 4.78 -2.39 -0.01 1.45 16 16 C 0.07 2.20 5.59 86.33 0.48 2.68 16 17 N -0.69 -16.53 6.13 -514.01 -3.15 -19.68 16 18 C 0.06 1.25 5.99 86.33 0.52 1.77 16 19 C -0.09 -1.83 3.21 -10.74 -0.03 -1.86 16 20 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 21 C -0.13 -2.87 8.75 71.98 0.63 -2.24 16 22 C -0.11 -2.96 4.35 30.67 0.13 -2.82 16 23 H 0.05 1.95 6.29 -2.39 -0.02 1.93 16 24 H 0.05 2.27 4.88 -2.38 -0.01 2.25 16 25 H 0.04 1.68 6.67 -2.38 -0.02 1.66 16 26 H 0.25 16.18 8.73 -92.71 -0.81 15.37 16 27 H 0.04 1.85 6.43 -2.39 -0.02 1.84 16 28 H 0.08 2.55 6.07 -2.38 -0.01 2.53 16 29 H 0.02 0.70 6.40 -2.39 -0.02 0.69 16 30 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 2.12 6.35 -2.39 -0.02 2.11 16 32 H 0.35 7.05 8.90 -89.69 -0.80 6.25 16 33 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.05 1.28 6.02 -2.39 -0.01 1.26 16 38 H 0.06 1.73 6.41 -2.39 -0.02 1.72 16 39 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -65.03 278.38 -0.83 -65.86 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.05 Total: 17.06 kcal Atomic # 6 Polarization: -33.47 SS G_CDS: 4.21 Total: -29.26 kcal Atomic # 7 Polarization: -98.96 SS G_CDS: -6.90 Total: -105.85 kcal Atomic # 14 Polarization: 50.38 SS G_CDS: 1.81 Total: 52.20 kcal Total: -65.03 -0.83 -65.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401949374.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.546 kcal (2) G-P(sol) polarization free energy of solvation -65.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds