Wall clock time and date at job start Mon Mar 30 2020 03:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09005 * 109.46775 * 2 1 4 4 C 1.50703 * 109.46966 * 240.00122 * 2 1 3 5 5 H 1.07999 * 119.99456 * 239.99860 * 4 2 1 6 6 C 1.37875 * 119.99787 * 59.99907 * 4 2 1 7 7 N 1.31509 * 120.00400 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99405 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47323 * 90.00233 * 8 6 4 10 10 H 1.48508 * 109.46997 * 209.99703 * 8 6 4 11 11 H 1.48501 * 109.47501 * 329.99701 * 8 6 4 12 12 N 1.46895 * 109.46961 * 120.00068 * 2 1 3 13 13 C 1.46894 * 111.00203 * 63.18209 * 12 2 1 14 14 C 1.46903 * 110.99699 * 187.13737 * 12 2 1 15 15 H 1.09000 * 109.50303 * 304.08996 * 14 12 2 16 16 C 1.53038 * 109.50632 * 64.16881 * 14 12 2 17 17 N 1.46844 * 109.52340 * 179.11999 * 16 14 12 18 18 C 1.46846 * 111.19904 * 298.25639 * 17 16 14 19 19 C 1.53041 * 109.52245 * 61.74202 * 18 17 16 20 20 H 1.09000 * 109.49528 * 60.80473 * 19 18 17 21 21 C 1.52997 * 109.50071 * 180.87740 * 19 18 17 22 22 C 1.53117 * 109.27755 * 300.82126 * 19 18 17 23 23 H 1.08998 * 109.47013 * 293.06142 * 1 2 3 24 24 H 1.08995 * 109.47359 * 173.05906 * 1 2 3 25 25 H 1.09001 * 109.47110 * 53.05992 * 1 2 3 26 26 H 0.97003 * 120.00104 * 179.97438 * 7 6 4 27 27 H 1.09003 * 109.47020 * 60.00016 * 13 12 2 28 28 H 1.09006 * 109.47430 * 179.97438 * 13 12 2 29 29 H 1.08997 * 109.47193 * 299.99562 * 13 12 2 30 30 H 1.09003 * 109.45863 * 299.13725 * 16 14 12 31 31 H 1.09005 * 109.45916 * 59.10359 * 16 14 12 32 32 H 1.00898 * 111.00359 * 62.36001 * 17 16 14 33 33 H 1.08996 * 109.46244 * 181.76300 * 18 17 16 34 34 H 1.09001 * 109.46258 * 301.72923 * 18 17 16 35 35 H 1.09004 * 109.47040 * 60.00491 * 21 19 18 36 36 H 1.09005 * 109.47005 * 179.97438 * 21 19 18 37 37 H 1.08997 * 109.47523 * 299.99886 * 21 19 18 38 38 H 1.08996 * 109.52141 * 297.74961 * 22 19 18 39 39 H 1.09001 * 109.51946 * 177.55541 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.3427 -2.1617 -4.4119 10 1 2.4865 -0.1414 -5.1123 11 1 3.6293 -1.7583 -3.7122 12 7 2.0197 -0.6925 1.1994 13 6 1.6118 -2.1037 1.1959 14 6 3.4782 -0.5663 1.3216 15 1 3.9530 -0.9388 0.4139 16 6 3.8485 0.9046 1.5252 17 7 5.3047 1.0287 1.6684 18 6 5.7872 0.2935 2.8444 19 6 5.4747 -1.1957 2.6802 20 1 5.9821 -1.5783 1.7947 21 6 5.9580 -1.9582 3.9154 22 6 3.9628 -1.3807 2.5242 23 1 -0.3633 0.4026 0.9455 24 1 -0.3634 -1.0201 -0.1242 25 1 -0.3633 0.6176 -0.8214 26 1 0.7087 1.1613 -3.4844 27 1 2.0216 -2.5981 0.3151 28 1 1.9878 -2.5928 2.0946 29 1 0.5239 -2.1674 1.1753 30 1 3.5174 1.4850 0.6640 31 1 3.3617 1.2804 2.4252 32 1 5.7778 0.7227 0.8314 33 1 6.8642 0.4301 2.9414 34 1 5.2912 0.6722 3.7382 35 1 5.4493 -1.5759 4.8005 36 1 5.7348 -3.0187 3.7982 37 1 7.0337 -1.8232 4.0280 38 1 3.4584 -1.0339 3.4261 39 1 3.7396 -2.4355 2.3636 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401949378.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:30 Heat of formation + Delta-G solvation = -23.814552 kcal Electronic energy + Delta-G solvation = -16986.222650 eV Core-core repulsion = 14541.339429 eV Total energy + Delta-G solvation = -2444.883221 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.54823 -37.88741 -34.68429 -33.96268 -31.87268 -29.71969 -27.65630 -27.21577 -26.37438 -23.80753 -22.63374 -21.04318 -20.84298 -18.26733 -17.19595 -16.84234 -16.22044 -15.94125 -15.61046 -15.44750 -14.81812 -14.32481 -13.90241 -13.53792 -13.31526 -13.20828 -13.00820 -12.96239 -12.84137 -12.65740 -12.43469 -12.40410 -12.14509 -11.91924 -11.81494 -11.66725 -11.53742 -11.23005 -10.95125 -10.48279 -9.24698 -8.94180 -8.05887 -6.26429 1.34069 1.36186 1.44285 2.37792 3.13764 3.24272 3.57546 3.88468 3.97410 4.07681 4.22143 4.45152 4.56438 4.62739 4.63366 4.71789 4.83106 4.88027 4.93480 4.96276 5.07878 5.11883 5.15056 5.17221 5.21088 5.24546 5.31675 5.35762 5.47325 5.55344 5.69257 5.96145 6.09533 6.19264 6.38113 6.45973 6.66599 6.93880 7.43810 8.91091 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.029997 B = 0.008283 C = 0.007862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.193741 B = 3379.718386 C = 3560.586046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.208 3.792 3 H 0.016 0.984 4 C -0.546 4.546 5 H 0.046 0.954 6 C 0.022 3.978 7 N -0.912 5.912 8 Si 0.944 3.056 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.275 1.275 12 N -0.535 5.535 13 C 0.036 3.964 14 C 0.062 3.938 15 H 0.014 0.986 16 C 0.079 3.921 17 N -0.687 5.687 18 C 0.064 3.936 19 C -0.124 4.124 20 H 0.058 0.942 21 C -0.134 4.134 22 C -0.101 4.101 23 H 0.030 0.970 24 H 0.025 0.975 25 H 0.055 0.945 26 H 0.262 0.738 27 H 0.009 0.991 28 H 0.073 0.927 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.339 0.661 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.195 -4.343 10.468 13.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.100 3.900 3 H 0.034 0.966 4 C -0.585 4.585 5 H 0.064 0.936 6 C -0.178 4.178 7 N -0.551 5.551 8 Si 0.771 3.229 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.199 1.199 12 N -0.258 5.258 13 C -0.113 4.113 14 C -0.049 4.049 15 H 0.032 0.968 16 C -0.051 4.051 17 N -0.315 5.315 18 C -0.066 4.066 19 C -0.145 4.145 20 H 0.077 0.923 21 C -0.192 4.192 22 C -0.139 4.139 23 H 0.049 0.951 24 H 0.044 0.956 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.028 0.972 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.156 0.844 33 H 0.109 0.891 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.864 -3.356 11.081 13.996 hybrid contribution 0.147 -1.649 -2.439 2.948 sum 8.011 -5.005 8.642 12.802 Atomic orbital electron populations 1.21590 0.97639 0.99274 0.98904 1.19121 0.92344 0.93247 0.85251 0.96588 1.21845 1.31443 1.12429 0.92768 0.93623 1.25580 0.95221 0.95534 1.01449 1.70007 1.37360 1.23769 1.23953 0.85775 0.78637 0.78538 0.79975 1.20319 1.20760 1.19948 1.62525 1.10672 1.12919 1.39731 1.22231 1.00350 0.89451 0.99250 1.22156 0.88912 0.97443 0.96408 0.96797 1.21797 0.88186 0.94073 1.01049 1.60786 1.04312 1.59003 1.07353 1.22179 1.01007 0.89946 0.93424 1.21864 0.94958 0.98010 0.99659 0.92329 1.21679 1.01593 0.99570 0.96361 1.21726 0.95681 0.99157 0.97321 0.95098 0.95551 0.92657 0.92913 0.97226 0.90818 0.92614 0.93311 0.91104 0.84399 0.89136 0.90815 0.92041 0.92760 0.91257 0.91279 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.72 8.52 71.98 0.61 -5.10 16 2 C 0.21 10.46 2.17 44.17 0.10 10.55 16 3 H 0.02 0.90 6.12 -2.38 -0.01 0.89 16 4 C -0.55 -29.61 7.00 25.60 0.18 -29.43 16 5 H 0.05 2.51 5.84 -2.91 -0.02 2.50 16 6 C 0.02 1.22 5.30 84.65 0.45 1.67 16 7 N -0.91 -52.33 11.40 21.45 0.24 -52.08 16 8 Si 0.94 43.84 29.54 68.60 2.03 45.87 16 9 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 12 N -0.53 -22.66 4.60 -875.87 -4.03 -26.69 16 13 C 0.04 1.39 8.46 127.69 1.08 2.47 16 14 C 0.06 2.33 1.93 44.97 0.09 2.41 16 15 H 0.01 0.62 6.84 -2.39 -0.02 0.60 16 16 C 0.08 2.91 5.71 86.33 0.49 3.40 16 17 N -0.69 -20.94 6.87 -514.00 -3.53 -24.47 16 18 C 0.06 1.53 5.84 86.33 0.50 2.03 16 19 C -0.12 -2.97 2.87 -10.74 -0.03 -3.00 16 20 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 21 C -0.13 -2.43 9.20 71.98 0.66 -1.77 16 22 C -0.10 -2.98 3.97 30.67 0.12 -2.86 16 23 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.03 1.25 6.83 -2.39 -0.02 1.23 16 25 H 0.05 2.99 6.29 -2.39 -0.02 2.97 16 26 H 0.26 14.34 8.31 -92.71 -0.77 13.56 16 27 H 0.01 0.40 6.28 -2.39 -0.01 0.38 16 28 H 0.07 2.41 6.01 -2.38 -0.01 2.39 16 29 H 0.06 2.18 6.54 -2.39 -0.02 2.16 16 30 H 0.05 2.13 6.40 -2.39 -0.02 2.11 16 31 H 0.07 2.57 8.14 -2.38 -0.02 2.55 16 32 H 0.34 10.26 8.86 -89.70 -0.79 9.47 16 33 H 0.09 1.79 8.14 -2.39 -0.02 1.78 16 34 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 37 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.06 1.74 6.40 -2.39 -0.02 1.73 16 Total: -1.00 -58.23 288.69 -0.81 -59.04 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.23 Total: 17.96 kcal Atomic # 6 Polarization: -23.88 SS G_CDS: 4.25 Total: -19.63 kcal Atomic # 7 Polarization: -95.92 SS G_CDS: -7.31 Total: -103.24 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -58.23 -0.81 -59.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401949378.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.222 kcal (2) G-P(sol) polarization free energy of solvation -58.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds