Wall clock time and date at job start Mon Mar 30 2020 02:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46629 * 2 1 4 4 N 1.46506 * 109.46784 * 179.97438 * 3 2 1 5 5 C 1.36943 * 119.99553 * 85.08817 * 4 3 2 6 6 H 1.07993 * 119.99645 * 209.41765 * 5 4 3 7 7 C 1.38810 * 119.99896 * 29.41368 * 5 4 3 8 8 N 1.31610 * 120.00225 * 40.59944 * 7 5 4 9 9 Si 1.86803 * 119.99737 * 220.86534 * 7 5 4 10 10 H 1.48500 * 109.47203 * 179.72691 * 9 7 5 11 11 H 1.48498 * 109.47406 * 299.73229 * 9 7 5 12 12 H 1.48507 * 109.46726 * 59.73320 * 9 7 5 13 13 C 1.46491 * 120.00144 * 265.08565 * 4 3 2 14 14 C 1.53006 * 109.47288 * 269.99733 * 13 4 3 15 15 H 1.09003 * 110.62283 * 56.65020 * 14 13 4 16 16 C 1.55135 * 110.70892 * 179.97438 * 14 13 4 17 17 C 1.54905 * 101.65067 * 154.03742 * 16 14 13 18 18 N 1.47843 * 104.79811 * 322.93118 * 17 16 14 19 19 C 1.46906 * 110.99775 * 146.36654 * 18 17 16 20 20 C 1.47438 * 108.56522 * 24.09842 * 18 17 16 21 21 H 1.08994 * 109.46931 * 300.00129 * 1 2 3 22 22 H 1.08995 * 109.46861 * 60.00203 * 1 2 3 23 23 H 1.09004 * 109.46330 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47437 * 239.99722 * 2 1 3 25 25 H 1.09002 * 109.47254 * 119.99738 * 2 1 3 26 26 H 1.09004 * 109.47446 * 60.00322 * 3 2 1 27 27 H 1.08995 * 109.47333 * 299.99508 * 3 2 1 28 28 H 0.97002 * 120.00313 * 6.11391 * 8 7 5 29 29 H 1.08994 * 109.47290 * 30.00107 * 13 4 3 30 30 H 1.09002 * 109.47257 * 150.00574 * 13 4 3 31 31 H 1.08992 * 110.99532 * 272.13161 * 16 14 13 32 32 H 1.09004 * 110.98597 * 35.94944 * 16 14 13 33 33 H 1.09005 * 110.37301 * 204.10011 * 17 16 14 34 34 H 1.08997 * 110.37220 * 81.76938 * 17 16 14 35 35 H 1.08998 * 109.46900 * 299.15627 * 19 18 17 36 36 H 1.09001 * 109.47381 * 59.15579 * 19 18 17 37 37 H 1.08996 * 109.46947 * 179.15737 * 19 18 17 38 38 H 1.09006 * 109.88763 * 239.60007 * 20 18 17 39 39 H 1.08999 * 109.89125 * 118.41790 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1901 1.3409 -1.1807 6 1 5.1657 0.8780 -1.2010 7 6 3.6307 1.8326 -2.3521 8 7 2.9795 2.9763 -2.3408 9 14 3.7956 0.8674 -3.9429 10 1 3.1107 1.5987 -5.0389 11 1 5.2334 0.7068 -4.2777 12 1 3.1736 -0.4709 -3.7765 13 6 4.2370 1.5515 1.2649 14 6 4.4919 3.0266 1.5813 15 1 3.5535 3.5803 1.6125 16 6 5.2663 3.1753 2.9173 17 6 5.9835 4.5331 2.7137 18 7 6.3610 4.5502 1.2844 19 6 6.3006 5.9134 0.7403 20 6 5.4568 3.6472 0.5492 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0277 -0.0005 24 1 1.8935 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 1.6766 1.9564 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 2.9658 3.5187 -1.5367 29 1 3.6477 1.1047 2.0656 30 1 5.1895 1.0285 1.1795 31 1 4.5806 3.2188 3.7633 32 1 5.9876 2.3676 3.0423 33 1 6.8725 4.5906 3.3418 34 1 5.3061 5.3573 2.9373 35 1 5.2825 6.2935 0.8247 36 1 6.9770 6.5588 1.3008 37 1 6.5974 5.8995 -0.3084 38 1 6.0335 2.8613 0.0614 39 1 4.8926 4.2113 -0.1935 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685971915.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:20 Heat of formation + Delta-G solvation = -5.788550 kcal Electronic energy + Delta-G solvation = -16784.282396 eV Core-core repulsion = 14340.180841 eV Total energy + Delta-G solvation = -2444.101555 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.12900 -37.95215 -34.37544 -34.06892 -32.10443 -29.91282 -27.55490 -27.26329 -25.63784 -23.48488 -22.04758 -21.89054 -20.75629 -19.22646 -17.20995 -16.45406 -16.24634 -16.03306 -15.55543 -15.10822 -14.93600 -14.54058 -14.28907 -13.88090 -13.84690 -13.66711 -12.88984 -12.63795 -12.53878 -12.47383 -12.39020 -12.22748 -11.99149 -11.92638 -11.78364 -11.72504 -11.58737 -11.50623 -11.28029 -10.23145 -9.31163 -8.82392 -8.20771 -5.24369 1.57552 1.62300 1.81564 2.67401 3.07266 3.18314 3.50285 3.82439 3.91130 4.02135 4.23134 4.37909 4.40789 4.41991 4.47135 4.57968 4.62784 4.72485 4.74025 4.76674 4.84257 4.87995 4.99977 5.00574 5.06664 5.16463 5.19960 5.23365 5.32343 5.47112 5.47673 5.62331 5.99089 6.04045 6.15021 6.43560 7.15472 7.88480 8.33217 8.96389 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.022838 B = 0.009760 C = 0.007579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.755209 B = 2868.289299 C = 3693.684670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.127 4.127 3 C 0.144 3.856 4 N -0.605 5.605 5 C -0.350 4.350 6 H 0.034 0.966 7 C -0.052 4.052 8 N -0.907 5.907 9 Si 1.079 2.921 10 H -0.294 1.294 11 H -0.281 1.281 12 H -0.285 1.285 13 C 0.159 3.841 14 C -0.119 4.119 15 H 0.045 0.955 16 C -0.114 4.114 17 C 0.042 3.958 18 N -0.552 5.552 19 C 0.025 3.975 20 C 0.082 3.918 21 H 0.061 0.939 22 H 0.041 0.959 23 H 0.065 0.935 24 H 0.035 0.965 25 H 0.054 0.946 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.254 0.746 29 H 0.056 0.944 30 H 0.038 0.962 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.047 0.953 35 H 0.017 0.983 36 H 0.089 0.911 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.099 0.469 10.037 10.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C 0.018 3.982 4 N -0.326 5.326 5 C -0.480 4.480 6 H 0.052 0.948 7 C -0.253 4.253 8 N -0.546 5.546 9 Si 0.906 3.094 10 H -0.221 1.221 11 H -0.207 1.207 12 H -0.211 1.211 13 C 0.033 3.967 14 C -0.141 4.141 15 H 0.064 0.936 16 C -0.153 4.153 17 C -0.085 4.085 18 N -0.276 5.276 19 C -0.123 4.123 20 C -0.046 4.046 21 H 0.080 0.920 22 H 0.060 0.940 23 H 0.084 0.916 24 H 0.054 0.946 25 H 0.073 0.927 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.109 0.891 32 H 0.096 0.904 33 H 0.114 0.886 34 H 0.065 0.935 35 H 0.036 0.964 36 H 0.108 0.892 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 1.192 0.266 8.375 8.464 hybrid contribution -0.337 0.570 1.120 1.301 sum 0.854 0.836 9.495 9.570 Atomic orbital electron populations 1.21656 0.94774 1.01882 1.01381 1.21850 0.95918 0.98631 1.00323 1.20858 0.83419 0.95085 0.98818 1.44203 1.01116 1.85024 1.02264 1.19597 1.04582 1.36328 0.87458 0.94819 1.26479 1.00029 0.95747 1.03033 1.70908 1.46416 1.08100 1.29172 0.83342 0.76507 0.75541 0.73986 1.22064 1.20718 1.21126 1.20950 0.95460 0.92546 0.87702 1.22879 0.96805 0.99325 0.95059 0.93633 1.22718 0.98917 0.97347 0.96303 1.23119 0.99563 0.97135 0.88675 1.63659 1.51389 1.08819 1.03747 1.22489 0.99716 0.89620 1.00508 1.22336 0.92292 0.94871 0.95059 0.92026 0.94020 0.91557 0.94633 0.92696 0.94479 0.94520 0.93699 0.92606 0.94327 0.89135 0.90422 0.88650 0.93457 0.96423 0.89219 0.92716 0.93088 0.96532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.42 9.91 71.98 0.71 -3.70 16 2 C -0.13 -5.03 6.23 30.60 0.19 -4.84 16 3 C 0.14 6.56 5.18 86.38 0.45 7.01 16 4 N -0.60 -29.23 2.31 -702.01 -1.62 -30.85 16 5 C -0.35 -19.14 7.85 84.03 0.66 -18.48 16 6 H 0.03 1.95 8.06 -2.91 -0.02 1.92 16 7 C -0.05 -2.92 4.53 84.86 0.38 -2.54 16 8 N -0.91 -53.89 12.19 21.65 0.26 -53.62 16 9 Si 1.08 51.34 30.06 68.60 2.06 53.40 16 10 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 13 C 0.16 6.48 5.07 86.38 0.44 6.92 16 14 C -0.12 -4.46 3.20 -9.61 -0.03 -4.49 16 15 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 16 C -0.11 -3.23 6.52 31.98 0.21 -3.02 16 17 C 0.04 1.17 6.73 86.77 0.58 1.75 16 18 N -0.55 -19.15 5.44 -911.71 -4.96 -24.11 16 19 C 0.03 0.78 9.12 127.69 1.16 1.94 16 20 C 0.08 3.47 5.67 86.65 0.49 3.96 16 21 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 22 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 24 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.04 1.55 8.03 -2.38 -0.02 1.54 16 27 H 0.04 1.94 5.67 -2.39 -0.01 1.92 16 28 H 0.25 15.44 8.10 -92.71 -0.75 14.68 16 29 H 0.06 2.02 8.07 -2.39 -0.02 2.00 16 30 H 0.04 1.62 7.96 -2.39 -0.02 1.60 16 31 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.08 2.13 8.05 -2.39 -0.02 2.11 16 33 H 0.10 2.22 8.14 -2.38 -0.02 2.20 16 34 H 0.05 1.23 7.78 -2.39 -0.02 1.22 16 35 H 0.02 0.55 8.10 -2.39 -0.02 0.53 16 36 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.05 2.46 7.13 -2.38 -0.02 2.44 16 39 H 0.02 0.80 7.58 -2.39 -0.02 0.78 16 Total: -1.00 -61.25 307.28 1.98 -59.27 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 0.99 Total: 11.39 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: 5.25 Total: -15.47 kcal Atomic # 7 Polarization: -102.26 SS G_CDS: -6.32 Total: -108.59 kcal Atomic # 14 Polarization: 51.34 SS G_CDS: 2.06 Total: 53.40 kcal Total: -61.25 1.98 -59.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685971915.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.478 kcal (2) G-P(sol) polarization free energy of solvation -61.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds