Wall clock time and date at job start Mon Mar 30 2020 03:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.46825 * 2 1 4 4 C 1.52992 * 109.46854 * 240.00267 * 2 1 3 5 5 C 1.50707 * 109.47137 * 175.55252 * 4 2 1 6 6 H 1.08004 * 119.99625 * 3.47819 * 5 4 2 7 7 C 1.37871 * 120.00082 * 183.47833 * 5 4 2 8 8 N 1.31520 * 120.00246 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99715 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47179 * 90.00139 * 9 7 5 11 11 H 1.48503 * 109.46970 * 209.99833 * 9 7 5 12 12 H 1.48493 * 109.46973 * 329.99920 * 9 7 5 13 13 N 1.46896 * 109.46797 * 120.00233 * 2 1 3 14 14 C 1.46849 * 111.00325 * 58.15366 * 13 2 1 15 15 C 1.53035 * 109.52242 * 174.15656 * 14 13 2 16 16 H 1.08999 * 109.50723 * 299.23741 * 15 14 13 17 17 N 1.46898 * 109.50105 * 179.12510 * 15 14 13 18 18 C 1.53115 * 109.27930 * 59.18242 * 15 14 13 19 19 C 1.53119 * 109.16000 * 302.34405 * 18 15 14 20 20 C 1.46852 * 110.99957 * 293.94507 * 13 2 1 21 21 H 1.08993 * 109.46591 * 65.82868 * 20 13 2 22 22 C 1.53001 * 109.45927 * 305.85313 * 20 13 2 23 23 H 1.08997 * 109.47442 * 175.01026 * 1 2 3 24 24 H 1.09000 * 109.47044 * 295.00976 * 1 2 3 25 25 H 1.09002 * 109.47171 * 55.01168 * 1 2 3 26 26 H 1.08998 * 109.47123 * 295.54874 * 4 2 1 27 27 H 1.08997 * 109.47695 * 55.55297 * 4 2 1 28 28 H 0.97001 * 120.00002 * 180.02562 * 8 7 5 29 29 H 1.09001 * 109.46316 * 294.17656 * 14 13 2 30 30 H 1.09006 * 109.45750 * 54.14648 * 14 13 2 31 31 H 1.00903 * 111.00071 * 180.02562 * 17 15 14 32 32 H 1.00910 * 110.99868 * 303.95488 * 17 15 14 33 33 H 1.09000 * 109.52389 * 62.24673 * 18 15 14 34 34 H 1.08995 * 109.52506 * 182.37308 * 18 15 14 35 35 H 1.09004 * 109.50087 * 177.59520 * 19 18 15 36 36 H 1.08996 * 109.50053 * 297.71061 * 19 18 15 37 37 H 1.09004 * 109.46890 * 66.55890 * 22 20 13 38 38 H 1.09000 * 109.46760 * 186.54925 * 22 20 13 39 39 H 1.08992 * 109.47717 * 306.55540 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5430 -0.6265 -1.3056 6 1 4.0848 -0.1533 -0.5000 7 6 4.2263 -1.1439 -2.3855 8 7 3.5665 -1.7197 -3.3668 9 14 6.0894 -1.0271 -2.4550 10 1 6.6848 -2.2293 -1.8183 11 1 6.5280 -0.9488 -3.8716 12 1 6.5364 0.1895 -1.7304 13 7 2.0196 -0.6925 1.1994 14 6 1.5131 -2.0697 1.2556 15 6 2.1565 -2.8036 2.4343 16 1 3.2377 -2.8322 2.2988 17 7 1.6338 -4.1747 2.5027 18 6 1.8234 -2.0641 3.7330 19 6 2.3187 -0.6189 3.6296 20 6 1.6704 0.0517 2.4162 21 1 0.5876 0.0578 2.5401 22 6 2.1780 1.4902 2.2972 23 1 -0.3634 -1.0237 -0.0894 24 1 -0.3633 0.4345 0.9313 25 1 -0.3633 0.5893 -0.8419 26 1 1.7432 -1.7692 -1.2103 27 1 1.6131 -0.2554 -2.1374 28 1 4.0473 -2.0840 -4.1264 29 1 0.4309 -2.0537 1.3848 30 1 1.7604 -2.5857 0.3278 31 1 2.0437 -4.6800 3.2739 32 1 0.6266 -4.1750 2.5651 33 1 0.7446 -2.0692 3.8886 34 1 2.3146 -2.5594 4.5705 35 1 2.0465 -0.0754 4.5344 36 1 3.4023 -0.6131 3.5129 37 1 1.6311 2.0042 1.5067 38 1 2.0231 2.0095 3.2429 39 1 3.2411 1.4817 2.0572 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690881558.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:13 Heat of formation + Delta-G solvation = -10.383113 kcal Electronic energy + Delta-G solvation = -17017.826734 eV Core-core repulsion = 14573.525944 eV Total energy + Delta-G solvation = -2444.300790 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.37840 -35.55016 -33.61557 -32.19881 -29.77576 -29.47822 -27.25751 -25.47651 -23.80770 -22.92759 -20.86074 -19.91047 -18.42358 -16.21074 -15.99844 -15.24830 -14.65714 -14.38340 -13.99090 -13.87007 -13.72024 -13.01785 -12.76630 -12.15361 -12.03682 -11.92896 -11.62048 -11.60507 -11.31518 -10.99020 -10.84566 -10.63797 -10.52349 -10.47384 -10.24980 -9.97262 -9.60549 -9.08876 -8.91405 -8.42820 -8.18935 -7.40016 -5.82817 -3.80296 3.43644 3.49341 3.53050 4.37848 4.61655 4.89227 5.01685 5.12775 5.26884 5.44426 5.54152 5.68035 5.71450 5.79887 5.84318 5.89496 5.98317 5.99973 6.03083 6.10314 6.17847 6.32784 6.39981 6.50972 6.52437 6.65499 6.72593 6.85712 7.05432 7.36133 7.59390 7.65150 7.78678 8.00795 8.10282 8.19263 8.64858 9.26069 9.81296 11.29239 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.023721 B = 0.009084 C = 0.008461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.086907 B = 3081.628103 C = 3308.574219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.085 3.915 3 H 0.076 0.924 4 C 0.028 3.972 5 C -0.488 4.488 6 H 0.061 0.939 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.889 3.111 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.276 1.276 13 N -0.504 5.504 14 C 0.067 3.933 15 C 0.093 3.907 16 H 0.090 0.910 17 N -0.842 5.842 18 C -0.151 4.151 19 C -0.106 4.106 20 C 0.077 3.923 21 H 0.030 0.970 22 C -0.145 4.145 23 H 0.051 0.949 24 H 0.039 0.961 25 H 0.054 0.946 26 H 0.018 0.982 27 H 0.020 0.980 28 H 0.256 0.744 29 H 0.018 0.982 30 H 0.098 0.902 31 H 0.337 0.663 32 H 0.333 0.667 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.048 0.952 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.315 1.271 13.497 14.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.023 4.023 3 H 0.094 0.906 4 C -0.009 4.009 5 C -0.527 4.527 6 H 0.079 0.921 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.718 3.282 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.201 1.201 13 N -0.229 5.229 14 C -0.062 4.062 15 C -0.019 4.019 16 H 0.108 0.892 17 N -0.369 5.369 18 C -0.191 4.191 19 C -0.145 4.145 20 C -0.032 4.032 21 H 0.047 0.953 22 C -0.202 4.202 23 H 0.070 0.930 24 H 0.058 0.942 25 H 0.073 0.927 26 H 0.036 0.964 27 H 0.038 0.962 28 H 0.066 0.934 29 H 0.036 0.964 30 H 0.116 0.884 31 H 0.149 0.851 32 H 0.145 0.855 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.432 1.068 12.564 13.366 hybrid contribution -0.294 0.297 0.921 1.011 sum -4.725 1.365 13.486 14.355 Atomic orbital electron populations 1.22524 1.00080 1.01367 1.00357 1.21973 0.89831 0.98869 0.91630 0.90591 1.19235 0.96445 0.95246 0.89948 1.21169 0.91685 1.35959 1.03863 0.92065 1.25007 0.97884 0.96007 0.95994 1.69968 1.35083 1.40063 1.09340 0.86645 0.86633 0.78283 0.76679 1.20935 1.21708 1.20087 1.61997 1.59215 1.00876 1.00769 1.21998 0.94882 0.89869 0.99424 1.21514 1.00880 0.86347 0.93138 0.89174 1.58807 1.10997 1.15515 1.51605 1.22445 1.00245 0.97382 0.99034 1.21537 1.01535 0.94632 0.96749 1.21593 0.96442 0.93899 0.91289 0.95256 1.21868 1.02714 0.95038 1.00591 0.93026 0.94185 0.92696 0.96415 0.96222 0.93390 0.96392 0.88390 0.85115 0.85456 0.92992 0.92633 0.92501 0.90969 0.92506 0.93293 0.91415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.25 8.44 37.16 0.31 -2.94 16 2 C 0.08 1.73 1.93 -67.71 -0.13 1.60 16 3 H 0.08 1.58 6.01 -51.93 -0.31 1.27 16 4 C 0.03 0.72 4.28 -27.88 -0.12 0.60 16 5 C -0.49 -13.75 8.82 -34.44 -0.30 -14.06 16 6 H 0.06 1.72 7.74 -52.48 -0.41 1.32 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.37 16 8 N -0.90 -27.57 13.29 55.43 0.74 -26.84 16 9 Si 0.89 22.37 29.54 -169.99 -5.02 17.35 16 10 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 N -0.50 -9.51 4.17 -218.76 -0.91 -10.42 16 14 C 0.07 1.22 4.17 -3.83 -0.02 1.20 16 15 C 0.09 1.44 3.41 -67.64 -0.23 1.21 16 16 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 17 N -0.84 -11.45 9.26 -4.60 -0.04 -11.49 16 18 C -0.15 -1.96 5.57 -26.61 -0.15 -2.11 16 19 C -0.11 -1.44 5.37 -26.65 -0.14 -1.59 16 20 C 0.08 1.19 2.04 -67.72 -0.14 1.05 16 21 H 0.03 0.46 6.65 -51.93 -0.35 0.11 16 22 C -0.14 -2.11 8.54 37.16 0.32 -1.80 16 23 H 0.05 0.92 6.79 -51.93 -0.35 0.57 16 24 H 0.04 0.63 6.46 -51.93 -0.34 0.29 16 25 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.02 0.48 6.11 -51.93 -0.32 0.17 16 27 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.02 0.31 6.72 -51.93 -0.35 -0.04 16 30 H 0.10 2.17 5.98 -51.93 -0.31 1.86 16 31 H 0.34 3.80 9.04 -39.29 -0.36 3.45 16 32 H 0.33 4.06 8.98 -39.29 -0.35 3.70 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.06 0.85 6.60 -51.93 -0.34 0.50 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 294.26 15.07 4.43 4.43 Total: -1.00 -29.89 294.26 -8.22 -38.11 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -6.72 Total: 4.30 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: -0.70 Total: -15.45 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: -0.22 Total: -48.75 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.89 -8.22 -38.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690881558.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.730 kcal (2) G-P(sol) polarization free energy of solvation -29.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds