Wall clock time and date at job start Mon Mar 30 2020 03:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.47209 * 2 1 4 4 C 1.50704 * 109.46647 * 240.00238 * 2 1 3 5 5 H 1.07998 * 119.99923 * 239.99362 * 4 2 1 6 6 C 1.37872 * 120.00264 * 60.00297 * 4 2 1 7 7 N 1.31522 * 119.99708 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00362 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46696 * 90.00041 * 8 6 4 10 10 H 1.48496 * 109.47328 * 209.99755 * 8 6 4 11 11 H 1.48500 * 109.46834 * 329.99944 * 8 6 4 12 12 N 1.46895 * 109.47031 * 120.00525 * 2 1 3 13 13 C 1.46895 * 111.00358 * 62.82812 * 12 2 1 14 14 C 1.46905 * 110.99741 * 186.78273 * 12 2 1 15 15 H 1.08996 * 109.52090 * 302.29316 * 14 12 2 16 16 C 1.53115 * 109.52282 * 62.42141 * 14 12 2 17 17 C 1.53038 * 109.27510 * 177.62235 * 16 14 12 18 18 N 1.46846 * 109.52741 * 300.81793 * 17 16 14 19 19 C 1.46850 * 111.19496 * 61.74228 * 18 17 16 20 20 H 1.08995 * 109.46452 * 178.24171 * 19 18 17 21 21 C 1.53003 * 109.45161 * 58.26936 * 19 18 17 22 22 C 1.53041 * 109.52519 * 298.25947 * 19 18 17 23 23 H 1.09003 * 109.46953 * 53.15878 * 1 2 3 24 24 H 1.09000 * 109.47175 * 173.16176 * 1 2 3 25 25 H 1.08996 * 109.46788 * 293.16116 * 1 2 3 26 26 H 0.96996 * 119.99869 * 180.02562 * 7 6 4 27 27 H 1.08998 * 109.47561 * 183.95271 * 13 12 2 28 28 H 1.09006 * 109.47104 * 303.95530 * 13 12 2 29 29 H 1.09001 * 109.47195 * 63.94860 * 13 12 2 30 30 H 1.09000 * 109.50236 * 57.68303 * 16 14 12 31 31 H 1.08995 * 109.50441 * 297.56155 * 16 14 12 32 32 H 1.09002 * 109.46484 * 60.83711 * 17 16 14 33 33 H 1.09005 * 109.46021 * 180.80800 * 17 16 14 34 34 H 1.00898 * 111.00528 * 185.84008 * 18 17 16 35 35 H 1.09001 * 109.47481 * 299.94947 * 21 19 18 36 36 H 1.09001 * 109.46878 * 59.95171 * 21 19 18 37 37 H 1.09003 * 109.47089 * 179.97438 * 21 19 18 38 38 H 1.08998 * 109.50039 * 299.23667 * 22 19 18 39 39 H 1.08999 * 109.50247 * 179.11652 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8298 -2.6033 8 14 2.3223 -1.1194 -4.0081 9 1 1.3444 -2.1613 -4.4125 10 1 2.4871 -0.1401 -5.1121 11 1 3.6306 -1.7565 -3.7121 12 7 2.0197 -0.6926 1.1993 13 6 1.6047 -2.1017 1.1999 14 6 3.4792 -0.5735 1.3170 15 1 3.9510 -0.9794 0.4222 16 6 3.8613 0.9010 1.4731 17 6 5.3767 1.0136 1.6546 18 7 5.7864 0.2549 2.8432 19 6 5.4723 -1.1721 2.6965 20 1 5.8155 -1.7122 3.5789 21 6 6.1764 -1.7238 1.4552 22 6 3.9597 -1.3501 2.5461 23 1 -0.3633 0.6162 -0.8225 24 1 -0.3633 -1.0203 -0.1224 25 1 -0.3633 0.4042 0.9448 26 1 0.7081 1.1610 -3.4843 27 1 1.9199 -2.5730 2.1308 28 1 0.5199 -2.1611 1.1116 29 1 2.0664 -2.6168 0.3574 30 1 3.3583 1.3168 2.3461 31 1 3.5597 1.4514 0.5820 32 1 5.8788 0.6101 0.7753 33 1 5.6505 2.0612 1.7804 34 1 6.7668 0.3910 3.0390 35 1 5.8330 -1.1842 0.5726 36 1 7.2537 -1.5971 1.5622 37 1 5.9439 -2.7832 1.3463 38 1 3.4583 -0.9696 3.4360 39 1 3.7284 -2.4079 2.4215 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691744558.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:41 Heat of formation + Delta-G solvation = 2.022357 kcal Electronic energy + Delta-G solvation = -17181.989049 eV Core-core repulsion = 14738.226200 eV Total energy + Delta-G solvation = -2443.762849 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.19516 -36.35603 -32.77612 -31.44961 -30.55382 -28.41233 -26.72314 -25.41311 -24.82769 -22.00337 -21.64128 -19.26510 -18.30410 -16.56584 -16.05691 -15.10544 -14.60113 -14.36201 -13.75551 -13.51793 -13.47563 -12.79790 -12.61233 -12.55442 -11.83171 -11.70693 -11.45471 -11.32909 -11.07417 -10.84438 -10.77133 -10.63736 -10.53683 -10.19135 -10.13323 -9.82875 -9.56679 -9.46769 -8.99971 -8.36018 -8.17929 -7.03708 -5.97015 -4.08812 3.25788 3.33203 3.35387 4.40226 4.46041 4.99532 5.15693 5.28582 5.30283 5.45236 5.59735 5.68118 5.80600 5.94057 6.00313 6.09081 6.16542 6.31243 6.33710 6.44553 6.48612 6.59397 6.61428 6.80726 6.86317 7.01978 7.07909 7.11560 7.27851 7.33840 7.61217 7.64519 7.75616 8.02868 8.22304 8.39628 8.51213 9.01599 9.58084 11.03267 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.027683 B = 0.009301 C = 0.008481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.210033 B = 3009.818422 C = 3300.620106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.203 3.797 3 H 0.043 0.957 4 C -0.538 4.538 5 H 0.054 0.946 6 C 0.068 3.932 7 N -0.887 5.887 8 Si 0.884 3.116 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.538 5.538 13 C 0.033 3.967 14 C 0.093 3.907 15 H 0.045 0.955 16 C -0.105 4.105 17 C 0.056 3.944 18 N -0.683 5.683 19 C 0.086 3.914 20 H 0.074 0.926 21 C -0.191 4.191 22 C -0.107 4.107 23 H 0.078 0.922 24 H 0.026 0.974 25 H 0.014 0.986 26 H 0.260 0.740 27 H 0.042 0.958 28 H 0.058 0.942 29 H 0.026 0.974 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.032 0.968 33 H 0.068 0.932 34 H 0.333 0.667 35 H 0.068 0.932 36 H 0.046 0.954 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.651 -2.626 7.838 11.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.097 3.903 3 H 0.060 0.940 4 C -0.577 4.577 5 H 0.072 0.928 6 C -0.134 4.134 7 N -0.525 5.525 8 Si 0.713 3.287 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.262 5.262 13 C -0.116 4.116 14 C -0.016 4.016 15 H 0.063 0.937 16 C -0.143 4.143 17 C -0.073 4.073 18 N -0.313 5.313 19 C -0.024 4.024 20 H 0.093 0.907 21 C -0.250 4.250 22 C -0.145 4.145 23 H 0.097 0.903 24 H 0.045 0.955 25 H 0.033 0.967 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.050 0.950 33 H 0.086 0.914 34 H 0.150 0.850 35 H 0.087 0.913 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.756 -2.121 8.450 11.025 hybrid contribution 1.376 -1.235 -2.458 3.076 sum 8.132 -3.357 5.993 10.644 Atomic orbital electron populations 1.21767 0.97932 0.99805 0.99077 1.19314 0.92147 0.94441 0.84383 0.93955 1.21693 1.31609 1.12684 0.91757 0.92805 1.24895 0.94962 0.94845 0.98738 1.69899 1.36571 1.22736 1.23317 0.86722 0.79194 0.79575 0.83258 1.20741 1.21197 1.20190 1.62553 1.09455 1.12327 1.41820 1.22193 1.00584 0.90406 0.98388 1.21419 0.89727 0.94794 0.95638 0.93718 1.21582 0.93256 0.97118 1.02385 1.21973 0.97202 0.97240 0.90903 1.60532 1.23045 1.08707 1.38991 1.21526 0.96277 0.88222 0.96390 0.90739 1.22599 0.99608 1.01983 1.00769 1.21732 0.93336 0.99711 0.99705 0.90327 0.95465 0.96661 0.92992 0.93924 0.92316 0.95582 0.91430 0.90746 0.94964 0.91399 0.85050 0.91326 0.93471 0.92368 0.91072 0.92153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.52 37.16 0.32 -2.83 16 2 C 0.20 5.07 2.15 -68.86 -0.15 4.92 16 3 H 0.04 1.15 6.10 -51.93 -0.32 0.83 16 4 C -0.54 -14.42 7.07 -34.44 -0.24 -14.66 16 5 H 0.05 1.46 5.83 -52.49 -0.31 1.16 16 6 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 7 N -0.89 -25.05 11.40 55.43 0.63 -24.41 16 8 Si 0.88 21.25 29.54 -169.99 -5.02 16.23 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.54 -11.62 4.61 -228.15 -1.05 -12.67 16 13 C 0.03 0.66 8.39 60.06 0.50 1.17 16 14 C 0.09 1.80 1.51 -67.59 -0.10 1.70 16 15 H 0.04 0.98 5.27 -51.93 -0.27 0.70 16 16 C -0.11 -1.95 5.16 -26.65 -0.14 -2.09 16 17 C 0.06 0.86 6.25 -3.83 -0.02 0.83 16 18 N -0.68 -9.39 6.65 -106.75 -0.71 -10.10 16 19 C 0.09 1.20 3.68 -67.72 -0.25 0.95 16 20 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 21 C -0.19 -2.60 8.58 37.16 0.32 -2.28 16 22 C -0.11 -1.73 4.37 -26.65 -0.12 -1.85 16 23 H 0.08 2.10 6.28 -51.93 -0.33 1.77 16 24 H 0.03 0.65 6.73 -51.93 -0.35 0.30 16 25 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.04 0.74 6.28 -51.93 -0.33 0.42 16 28 H 0.06 1.19 6.33 -51.93 -0.33 0.86 16 29 H 0.03 0.56 6.44 -51.93 -0.33 0.22 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.07 1.55 6.45 -51.93 -0.33 1.21 16 32 H 0.03 0.51 6.19 -51.93 -0.32 0.18 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.33 3.80 8.90 -39.29 -0.35 3.45 16 35 H 0.07 1.09 4.80 -51.93 -0.25 0.84 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.06 0.95 6.49 -51.93 -0.34 0.62 16 LS Contribution 281.89 15.07 4.25 4.25 Total: -1.00 -27.65 281.89 -8.13 -35.78 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -6.25 Total: 3.31 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: 0.02 Total: -12.37 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: -1.13 Total: -47.18 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -27.65 -8.13 -35.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691744558.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.801 kcal (2) G-P(sol) polarization free energy of solvation -27.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds