Wall clock time and date at job start Mon Mar 30 2020 03:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.47209 * 2 1 4 4 C 1.50704 * 109.46647 * 240.00238 * 2 1 3 5 5 H 1.07998 * 119.99923 * 239.99362 * 4 2 1 6 6 C 1.37872 * 120.00264 * 60.00297 * 4 2 1 7 7 N 1.31522 * 119.99708 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00362 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46696 * 90.00041 * 8 6 4 10 10 H 1.48496 * 109.47328 * 209.99755 * 8 6 4 11 11 H 1.48500 * 109.46834 * 329.99944 * 8 6 4 12 12 N 1.46895 * 109.47031 * 120.00525 * 2 1 3 13 13 C 1.46895 * 111.00358 * 62.82812 * 12 2 1 14 14 C 1.46905 * 110.99741 * 186.78273 * 12 2 1 15 15 H 1.08996 * 109.52090 * 302.29316 * 14 12 2 16 16 C 1.53115 * 109.52282 * 62.42141 * 14 12 2 17 17 C 1.53038 * 109.27510 * 177.62235 * 16 14 12 18 18 N 1.46846 * 109.52741 * 300.81793 * 17 16 14 19 19 C 1.46850 * 111.19496 * 61.74228 * 18 17 16 20 20 H 1.08995 * 109.46452 * 178.24171 * 19 18 17 21 21 C 1.53003 * 109.45161 * 58.26936 * 19 18 17 22 22 C 1.53041 * 109.52519 * 298.25947 * 19 18 17 23 23 H 1.09003 * 109.46953 * 53.15878 * 1 2 3 24 24 H 1.09000 * 109.47175 * 173.16176 * 1 2 3 25 25 H 1.08996 * 109.46788 * 293.16116 * 1 2 3 26 26 H 0.96996 * 119.99869 * 180.02562 * 7 6 4 27 27 H 1.08998 * 109.47561 * 183.95271 * 13 12 2 28 28 H 1.09006 * 109.47104 * 303.95530 * 13 12 2 29 29 H 1.09001 * 109.47195 * 63.94860 * 13 12 2 30 30 H 1.09000 * 109.50236 * 57.68303 * 16 14 12 31 31 H 1.08995 * 109.50441 * 297.56155 * 16 14 12 32 32 H 1.09002 * 109.46484 * 60.83711 * 17 16 14 33 33 H 1.09005 * 109.46021 * 180.80800 * 17 16 14 34 34 H 1.00898 * 111.00528 * 185.84008 * 18 17 16 35 35 H 1.09001 * 109.47481 * 299.94947 * 21 19 18 36 36 H 1.09001 * 109.46878 * 59.95171 * 21 19 18 37 37 H 1.09003 * 109.47089 * 179.97438 * 21 19 18 38 38 H 1.08998 * 109.50039 * 299.23667 * 22 19 18 39 39 H 1.08999 * 109.50247 * 179.11652 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8298 -2.6033 8 14 2.3223 -1.1194 -4.0081 9 1 1.3444 -2.1613 -4.4125 10 1 2.4871 -0.1401 -5.1121 11 1 3.6306 -1.7565 -3.7121 12 7 2.0197 -0.6926 1.1993 13 6 1.6047 -2.1017 1.1999 14 6 3.4792 -0.5735 1.3170 15 1 3.9510 -0.9794 0.4222 16 6 3.8613 0.9010 1.4731 17 6 5.3767 1.0136 1.6546 18 7 5.7864 0.2549 2.8432 19 6 5.4723 -1.1721 2.6965 20 1 5.8155 -1.7122 3.5789 21 6 6.1764 -1.7238 1.4552 22 6 3.9597 -1.3501 2.5461 23 1 -0.3633 0.6162 -0.8225 24 1 -0.3633 -1.0203 -0.1224 25 1 -0.3633 0.4042 0.9448 26 1 0.7081 1.1610 -3.4843 27 1 1.9199 -2.5730 2.1308 28 1 0.5199 -2.1611 1.1116 29 1 2.0664 -2.6168 0.3574 30 1 3.3583 1.3168 2.3461 31 1 3.5597 1.4514 0.5820 32 1 5.8788 0.6101 0.7753 33 1 5.6505 2.0612 1.7804 34 1 6.7668 0.3910 3.0390 35 1 5.8330 -1.1842 0.5726 36 1 7.2537 -1.5971 1.5622 37 1 5.9439 -2.7832 1.3463 38 1 3.4583 -0.9696 3.4360 39 1 3.7284 -2.4079 2.4215 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691744558.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:41 Heat of formation + Delta-G solvation = -17.316033 kcal Electronic energy + Delta-G solvation = -17182.827625 eV Core-core repulsion = 14738.226200 eV Total energy + Delta-G solvation = -2444.601424 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.60630 -37.98365 -34.72926 -32.72309 -32.22383 -30.11546 -27.98181 -27.33852 -26.62989 -23.37771 -23.17496 -21.11975 -19.69531 -18.16277 -17.76962 -16.94048 -16.10038 -15.82902 -15.34594 -15.13277 -14.96059 -14.39849 -14.15606 -13.79370 -13.45570 -13.34853 -13.01516 -12.96892 -12.79593 -12.65081 -12.44151 -12.17346 -12.11556 -11.99203 -11.85974 -11.57788 -11.22446 -11.08007 -10.80083 -10.45119 -9.31033 -8.88282 -8.04193 -6.25127 1.33778 1.35675 1.43904 2.38061 3.15029 3.34362 3.42204 3.94738 4.01656 4.22887 4.33885 4.39723 4.52633 4.59458 4.68228 4.73129 4.79755 4.89249 4.90923 4.98962 5.03017 5.07973 5.15167 5.17562 5.23771 5.25768 5.32079 5.39275 5.54108 5.61262 5.73086 6.00009 6.12974 6.22741 6.40449 6.63962 6.72399 6.96235 7.44960 8.92108 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.027683 B = 0.009301 C = 0.008481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.210033 B = 3009.818422 C = 3300.620106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.209 3.791 3 H 0.014 0.986 4 C -0.543 4.543 5 H 0.046 0.954 6 C 0.021 3.979 7 N -0.913 5.913 8 Si 0.943 3.057 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.275 1.275 12 N -0.541 5.541 13 C 0.038 3.962 14 C 0.095 3.905 15 H 0.018 0.982 16 C -0.101 4.101 17 C 0.065 3.935 18 N -0.681 5.681 19 C 0.089 3.911 20 H 0.103 0.897 21 C -0.186 4.186 22 C -0.100 4.100 23 H 0.055 0.945 24 H 0.026 0.974 25 H 0.028 0.972 26 H 0.261 0.739 27 H 0.074 0.926 28 H 0.054 0.946 29 H 0.009 0.991 30 H 0.062 0.938 31 H 0.040 0.960 32 H 0.027 0.973 33 H 0.084 0.916 34 H 0.352 0.648 35 H 0.039 0.961 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.107 -3.693 8.974 13.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.101 3.899 3 H 0.032 0.968 4 C -0.582 4.582 5 H 0.064 0.936 6 C -0.179 4.179 7 N -0.552 5.552 8 Si 0.770 3.230 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.199 1.199 12 N -0.264 5.264 13 C -0.111 4.111 14 C -0.014 4.014 15 H 0.036 0.964 16 C -0.139 4.139 17 C -0.065 4.065 18 N -0.313 5.313 19 C -0.021 4.021 20 H 0.121 0.879 21 C -0.245 4.245 22 C -0.138 4.138 23 H 0.073 0.927 24 H 0.045 0.955 25 H 0.047 0.953 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.027 0.973 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.045 0.955 33 H 0.102 0.898 34 H 0.171 0.829 35 H 0.058 0.942 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.230 -3.196 9.603 13.045 hybrid contribution 0.922 -0.892 -2.765 3.048 sum 9.151 -4.088 6.838 12.133 Atomic orbital electron populations 1.21604 0.97776 0.99284 0.98817 1.19090 0.92208 0.93243 0.85332 0.96797 1.21860 1.31247 1.12358 0.92730 0.93581 1.25593 0.95298 0.95575 1.01441 1.70017 1.37483 1.23827 1.23874 0.85787 0.78670 0.78566 0.79995 1.20253 1.20785 1.19948 1.62526 1.11137 1.13056 1.39706 1.22202 1.00192 0.89402 0.99292 1.21464 0.88000 0.95704 0.96253 0.96390 1.21490 0.95877 0.96152 1.00428 1.21818 0.94511 0.98589 0.91580 1.60457 1.24590 1.08496 1.37713 1.21548 0.94365 0.88560 0.97613 0.87888 1.22542 1.00903 1.01690 0.99348 1.21677 0.95294 0.99354 0.97474 0.92663 0.95454 0.95252 0.92973 0.90760 0.92755 0.97281 0.91956 0.94139 0.95499 0.89778 0.82874 0.94212 0.91271 0.92036 0.91300 0.91481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.84 8.52 71.98 0.61 -5.22 16 2 C 0.21 10.66 2.15 44.17 0.09 10.75 16 3 H 0.01 0.80 6.10 -2.39 -0.01 0.79 16 4 C -0.54 -29.67 7.07 25.60 0.18 -29.49 16 5 H 0.05 2.55 5.83 -2.91 -0.02 2.53 16 6 C 0.02 1.14 5.30 84.65 0.45 1.59 16 7 N -0.91 -52.63 11.40 21.45 0.24 -52.38 16 8 Si 0.94 43.99 29.54 68.60 2.03 46.02 16 9 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 12 N -0.54 -23.46 4.61 -875.73 -4.03 -27.49 16 13 C 0.04 1.48 8.39 127.69 1.07 2.55 16 14 C 0.09 3.66 1.51 44.99 0.07 3.72 16 15 H 0.02 0.81 5.27 -2.39 -0.01 0.79 16 16 C -0.10 -3.79 5.16 30.65 0.16 -3.63 16 17 C 0.06 1.90 6.25 86.33 0.54 2.44 16 18 N -0.68 -16.80 6.65 -491.66 -3.27 -20.07 16 19 C 0.09 2.21 3.68 44.94 0.17 2.37 16 20 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 21 C -0.19 -4.63 8.58 71.98 0.62 -4.02 16 22 C -0.10 -3.05 4.37 30.65 0.13 -2.91 16 23 H 0.05 3.01 6.28 -2.39 -0.01 3.00 16 24 H 0.03 1.31 6.73 -2.39 -0.02 1.30 16 25 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 27 H 0.07 2.44 6.28 -2.39 -0.01 2.43 16 28 H 0.05 2.17 6.33 -2.38 -0.02 2.15 16 29 H 0.01 0.37 6.44 -2.39 -0.02 0.36 16 30 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.04 1.76 6.45 -2.39 -0.02 1.75 16 32 H 0.03 0.83 6.19 -2.39 -0.01 0.81 16 33 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 34 H 0.35 6.74 8.90 -89.70 -0.80 5.94 16 35 H 0.04 1.22 4.80 -2.39 -0.01 1.21 16 36 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.07 1.95 6.49 -2.39 -0.02 1.93 16 Total: -1.00 -59.66 281.89 -0.70 -60.37 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 0.24 Total: 15.40 kcal Atomic # 6 Polarization: -25.93 SS G_CDS: 4.09 Total: -21.84 kcal Atomic # 7 Polarization: -92.89 SS G_CDS: -7.06 Total: -99.95 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -59.66 -0.70 -60.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691744558.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.051 kcal (2) G-P(sol) polarization free energy of solvation -59.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds