Wall clock time and date at job start Mon Mar 30 2020 03:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 109.51909 * 2 1 4 4 C 1.53034 * 109.49847 * 120.07477 * 2 1 3 5 5 C 1.53048 * 109.53807 * 58.59207 * 4 2 1 6 6 C 1.53197 * 109.33854 * 61.34541 * 5 4 2 7 7 N 1.46937 * 108.77071 * 305.42052 * 6 5 4 8 8 C 1.36941 * 120.59829 * 233.57573 * 7 6 5 9 9 H 1.07999 * 119.99332 * 147.72243 * 8 7 6 10 10 C 1.38811 * 120.00132 * 327.72022 * 8 7 6 11 11 N 1.31618 * 119.99906 * 350.10884 * 10 8 7 12 12 Si 1.86797 * 119.99750 * 170.11488 * 10 8 7 13 13 H 1.48502 * 109.47303 * 359.97438 * 12 10 8 14 14 H 1.48493 * 109.47388 * 119.99851 * 12 10 8 15 15 H 1.48504 * 109.46758 * 239.99551 * 12 10 8 16 16 C 1.46924 * 118.76609 * 53.55350 * 7 6 5 17 17 H 1.09000 * 109.58539 * 66.20634 * 16 7 6 18 18 C 1.53004 * 109.69873 * 186.55481 * 16 7 6 19 19 C 1.52998 * 109.47254 * 291.32498 * 18 16 7 20 20 C 1.52996 * 109.46997 * 185.29733 * 19 18 16 21 21 N 1.46901 * 109.47007 * 180.02562 * 20 19 18 22 22 H 1.08992 * 109.47765 * 299.91978 * 1 2 3 23 23 H 1.08999 * 109.47373 * 59.92639 * 1 2 3 24 24 H 1.09002 * 109.46962 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46705 * 298.57029 * 4 2 1 26 26 H 1.09000 * 109.45202 * 178.60220 * 4 2 1 27 27 H 1.08991 * 109.50006 * 181.31326 * 5 4 2 28 28 H 1.09002 * 109.49293 * 301.38035 * 5 4 2 29 29 H 1.09004 * 109.58324 * 65.17075 * 6 5 4 30 30 H 1.08994 * 109.58543 * 185.59407 * 6 5 4 31 31 H 0.97006 * 119.99747 * 180.02562 * 11 10 8 32 32 H 1.08998 * 109.47262 * 51.32692 * 18 16 7 33 33 H 1.09004 * 109.46874 * 171.32858 * 18 16 7 34 34 H 1.09006 * 109.47343 * 305.29557 * 19 18 16 35 35 H 1.09001 * 109.47219 * 65.29366 * 19 18 16 36 36 H 1.08998 * 109.47170 * 299.99472 * 20 19 18 37 37 H 1.08992 * 109.47569 * 60.00004 * 20 19 18 38 38 H 1.00901 * 111.00238 * 56.04314 * 21 20 19 39 39 H 1.00900 * 111.00179 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0407 -0.7229 1.2484 5 6 1.5030 -2.1557 1.2661 6 6 2.0134 -2.9044 0.0309 7 7 1.6516 -2.1381 -1.1695 8 6 0.9636 -2.7314 -2.1942 9 1 0.2693 -2.1523 -2.7848 10 6 1.1587 -4.0770 -2.4737 11 7 2.1380 -4.7350 -1.8903 12 14 0.0314 -4.9538 -3.6777 13 1 -0.9827 -3.9985 -4.1919 14 1 0.8326 -5.4830 -4.8104 15 1 -0.6522 -6.0770 -2.9876 16 6 2.0413 -0.7238 -1.2495 17 1 3.1275 -0.6462 -1.2980 18 6 1.4256 -0.0890 -2.4981 19 6 2.0859 -0.6760 -3.7472 20 6 1.5658 0.0514 -4.9886 21 7 2.1994 -0.5126 -6.1880 22 1 -0.3634 0.5125 0.8906 23 1 -0.3634 0.5150 -0.8893 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6987 -0.1957 2.1389 26 1 3.1304 -0.7442 1.2351 27 1 1.8481 -2.6627 2.1671 28 1 0.4132 -2.1354 1.2547 29 1 3.0974 -3.0051 0.0866 30 1 1.5544 -3.8921 -0.0133 31 1 2.2746 -5.6753 -2.0859 32 1 0.3558 -0.2963 -2.5212 33 1 1.5864 0.9889 -2.4746 34 1 3.1667 -0.5517 -3.6794 35 1 1.8462 -1.7368 -3.8204 36 1 0.4851 -0.0730 -5.0565 37 1 1.8056 1.1121 -4.9154 38 1 2.0454 -1.5083 -6.2440 39 1 1.8717 -0.0489 -7.0220 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693418773.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:10 Heat of formation + Delta-G solvation = 0.983414 kcal Electronic energy + Delta-G solvation = -17206.385799 eV Core-core repulsion = 14762.577899 eV Total energy + Delta-G solvation = -2443.807901 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.52081 -35.29487 -33.42350 -32.32277 -30.42142 -28.99378 -26.19004 -25.37927 -23.96302 -21.49940 -20.90179 -19.98639 -17.94952 -16.27498 -15.78435 -15.23874 -14.37118 -14.24567 -13.92521 -13.82393 -13.17478 -12.94194 -12.54529 -12.39963 -11.92964 -11.47435 -11.21498 -10.97576 -10.88826 -10.84715 -10.64897 -10.39309 -10.21410 -10.08399 -9.93321 -9.76779 -9.68297 -9.21132 -9.03738 -8.34535 -8.32974 -6.46036 -5.72263 -3.18016 3.35078 3.43073 3.44582 4.49732 4.95738 5.38694 5.40692 5.54471 5.63369 5.72139 5.74754 5.83586 6.07922 6.11443 6.14338 6.28273 6.30098 6.38597 6.47625 6.53552 6.58342 6.67271 6.77260 6.77772 6.88139 7.04020 7.06419 7.12750 7.27135 7.45314 7.51517 7.54613 7.77302 7.79238 7.84916 8.54350 9.28859 9.91981 10.52009 11.34961 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.017986 B = 0.013807 C = 0.008927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.362986 B = 2027.541246 C = 3135.739473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.104 4.104 3 H 0.051 0.949 4 C -0.104 4.104 5 C -0.145 4.145 6 C 0.173 3.827 7 N -0.583 5.583 8 C -0.236 4.236 9 H 0.068 0.932 10 C 0.002 3.998 11 N -0.902 5.902 12 Si 0.893 3.107 13 H -0.279 1.279 14 H -0.290 1.290 15 H -0.290 1.290 16 C 0.179 3.821 17 H 0.022 0.978 18 C -0.101 4.101 19 C -0.127 4.127 20 C 0.063 3.937 21 N -0.853 5.853 22 H 0.032 0.968 23 H 0.045 0.955 24 H 0.070 0.930 25 H 0.040 0.960 26 H 0.050 0.950 27 H 0.042 0.958 28 H 0.056 0.944 29 H 0.015 0.985 30 H 0.085 0.915 31 H 0.252 0.748 32 H 0.064 0.936 33 H 0.041 0.959 34 H 0.053 0.947 35 H 0.107 0.893 36 H 0.019 0.981 37 H 0.057 0.943 38 H 0.343 0.657 39 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.220 7.814 0.284 8.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.125 4.125 3 H 0.070 0.930 4 C -0.141 4.141 5 C -0.184 4.184 6 C 0.047 3.953 7 N -0.306 5.306 8 C -0.366 4.366 9 H 0.085 0.915 10 C -0.196 4.196 11 N -0.547 5.547 12 Si 0.723 3.277 13 H -0.204 1.204 14 H -0.217 1.217 15 H -0.217 1.217 16 C 0.072 3.928 17 H 0.040 0.960 18 C -0.139 4.139 19 C -0.164 4.164 20 C -0.068 4.068 21 N -0.382 5.382 22 H 0.051 0.949 23 H 0.064 0.936 24 H 0.089 0.911 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.033 0.967 30 H 0.103 0.897 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.125 0.875 36 H 0.037 0.963 37 H 0.075 0.925 38 H 0.155 0.845 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.493 7.894 0.575 8.054 hybrid contribution -1.457 -0.755 -0.843 1.845 sum -2.950 7.139 -0.268 7.729 Atomic orbital electron populations 1.21777 0.95703 1.02615 0.99247 1.21574 0.96128 0.97695 0.97077 0.93046 1.21410 0.99567 0.96735 0.96436 1.22247 1.00641 0.95667 0.99894 1.20755 0.96477 0.95395 0.82633 1.43979 1.65123 1.05090 1.16406 1.19090 1.15702 0.92823 1.08984 0.91459 1.25146 0.97074 0.98472 0.98915 1.69980 1.30175 1.09113 1.45416 0.86364 0.80310 0.79886 0.81118 1.20426 1.21713 1.21736 1.20455 0.95218 0.86032 0.91082 0.95997 1.21507 1.00648 0.96972 0.94765 1.21888 0.99554 1.03617 0.91382 1.21864 0.95216 0.98499 0.91208 1.58756 1.65658 1.09088 1.04690 0.94899 0.93560 0.91080 0.94112 0.93127 0.93896 0.92540 0.96736 0.89663 0.93811 0.91701 0.94006 0.92849 0.87524 0.96321 0.92465 0.84495 0.85904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 8.21 37.15 0.31 -2.04 16 2 C -0.10 -1.87 2.80 -90.51 -0.25 -2.12 16 3 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.10 -1.84 5.43 -26.69 -0.14 -1.98 16 5 C -0.15 -2.84 5.74 -26.60 -0.15 -2.99 16 6 C 0.17 4.11 5.24 -3.70 -0.02 4.09 16 7 N -0.58 -13.85 2.42 -164.77 -0.40 -14.25 16 8 C -0.24 -6.00 6.41 -15.06 -0.10 -6.10 16 9 H 0.07 1.70 5.62 -52.49 -0.30 1.40 16 10 C 0.00 0.06 5.06 -17.43 -0.09 -0.03 16 11 N -0.90 -25.55 11.07 55.49 0.61 -24.94 16 12 Si 0.89 21.10 29.56 -169.99 -5.03 16.07 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 16 C 0.18 3.69 2.59 -67.60 -0.18 3.51 16 17 H 0.02 0.50 8.12 -51.93 -0.42 0.07 16 18 C -0.10 -1.89 3.42 -26.73 -0.09 -1.98 16 19 C -0.13 -2.46 4.99 -26.73 -0.13 -2.59 16 20 C 0.06 1.02 6.79 -3.83 -0.03 1.00 16 21 N -0.85 -13.08 9.62 -10.37 -0.10 -13.18 16 22 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.05 0.76 6.55 -51.93 -0.34 0.42 16 24 H 0.07 1.39 5.97 -51.93 -0.31 1.08 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.06 1.11 6.34 -51.93 -0.33 0.79 16 29 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 2.26 6.15 -51.93 -0.32 1.94 16 31 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.06 1.27 5.59 -51.93 -0.29 0.98 16 33 H 0.04 0.70 8.13 -51.93 -0.42 0.27 16 34 H 0.05 1.09 8.13 -51.93 -0.42 0.67 16 35 H 0.11 2.43 5.19 -51.93 -0.27 2.16 16 36 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.34 5.35 8.99 -39.29 -0.35 4.99 16 39 H 0.33 4.13 9.08 -39.29 -0.36 3.77 16 LS Contribution 288.01 15.07 4.34 4.34 Total: -1.00 -27.28 288.01 -8.09 -35.37 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -6.65 Total: 7.81 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: -0.88 Total: -11.24 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: 0.12 Total: -52.37 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -27.28 -8.09 -35.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693418773.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.358 kcal (2) G-P(sol) polarization free energy of solvation -27.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds