Wall clock time and date at job start Mon Mar 30 2020 03:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 109.51909 * 2 1 4 4 C 1.53034 * 109.49847 * 120.07477 * 2 1 3 5 5 C 1.53048 * 109.53807 * 58.59207 * 4 2 1 6 6 C 1.53197 * 109.33854 * 61.34541 * 5 4 2 7 7 N 1.46937 * 108.77071 * 305.42052 * 6 5 4 8 8 C 1.36941 * 120.59829 * 233.57573 * 7 6 5 9 9 H 1.07999 * 119.99332 * 147.72243 * 8 7 6 10 10 C 1.38811 * 120.00132 * 327.72022 * 8 7 6 11 11 N 1.31618 * 119.99906 * 350.10884 * 10 8 7 12 12 Si 1.86797 * 119.99750 * 170.11488 * 10 8 7 13 13 H 1.48502 * 109.47303 * 359.97438 * 12 10 8 14 14 H 1.48493 * 109.47388 * 119.99851 * 12 10 8 15 15 H 1.48504 * 109.46758 * 239.99551 * 12 10 8 16 16 C 1.46924 * 118.76609 * 53.55350 * 7 6 5 17 17 H 1.09000 * 109.58539 * 66.20634 * 16 7 6 18 18 C 1.53004 * 109.69873 * 186.55481 * 16 7 6 19 19 C 1.52998 * 109.47254 * 291.32498 * 18 16 7 20 20 C 1.52996 * 109.46997 * 185.29733 * 19 18 16 21 21 N 1.46901 * 109.47007 * 180.02562 * 20 19 18 22 22 H 1.08992 * 109.47765 * 299.91978 * 1 2 3 23 23 H 1.08999 * 109.47373 * 59.92639 * 1 2 3 24 24 H 1.09002 * 109.46962 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46705 * 298.57029 * 4 2 1 26 26 H 1.09000 * 109.45202 * 178.60220 * 4 2 1 27 27 H 1.08991 * 109.50006 * 181.31326 * 5 4 2 28 28 H 1.09002 * 109.49293 * 301.38035 * 5 4 2 29 29 H 1.09004 * 109.58324 * 65.17075 * 6 5 4 30 30 H 1.08994 * 109.58543 * 185.59407 * 6 5 4 31 31 H 0.97006 * 119.99747 * 180.02562 * 11 10 8 32 32 H 1.08998 * 109.47262 * 51.32692 * 18 16 7 33 33 H 1.09004 * 109.46874 * 171.32858 * 18 16 7 34 34 H 1.09006 * 109.47343 * 305.29557 * 19 18 16 35 35 H 1.09001 * 109.47219 * 65.29366 * 19 18 16 36 36 H 1.08998 * 109.47170 * 299.99472 * 20 19 18 37 37 H 1.08992 * 109.47569 * 60.00004 * 20 19 18 38 38 H 1.00901 * 111.00238 * 56.04314 * 21 20 19 39 39 H 1.00900 * 111.00179 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0407 -0.7229 1.2484 5 6 1.5030 -2.1557 1.2661 6 6 2.0134 -2.9044 0.0309 7 7 1.6516 -2.1381 -1.1695 8 6 0.9636 -2.7314 -2.1942 9 1 0.2693 -2.1523 -2.7848 10 6 1.1587 -4.0770 -2.4737 11 7 2.1380 -4.7350 -1.8903 12 14 0.0314 -4.9538 -3.6777 13 1 -0.9827 -3.9985 -4.1919 14 1 0.8326 -5.4830 -4.8104 15 1 -0.6522 -6.0770 -2.9876 16 6 2.0413 -0.7238 -1.2495 17 1 3.1275 -0.6462 -1.2980 18 6 1.4256 -0.0890 -2.4981 19 6 2.0859 -0.6760 -3.7472 20 6 1.5658 0.0514 -4.9886 21 7 2.1994 -0.5126 -6.1880 22 1 -0.3634 0.5125 0.8906 23 1 -0.3634 0.5150 -0.8893 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6987 -0.1957 2.1389 26 1 3.1304 -0.7442 1.2351 27 1 1.8481 -2.6627 2.1671 28 1 0.4132 -2.1354 1.2547 29 1 3.0974 -3.0051 0.0866 30 1 1.5544 -3.8921 -0.0133 31 1 2.2746 -5.6753 -2.0859 32 1 0.3558 -0.2963 -2.5212 33 1 1.5864 0.9889 -2.4746 34 1 3.1667 -0.5517 -3.6794 35 1 1.8462 -1.7368 -3.8204 36 1 0.4851 -0.0730 -5.0565 37 1 1.8056 1.1121 -4.9154 38 1 2.0454 -1.5083 -6.2440 39 1 1.8717 -0.0489 -7.0220 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693418773.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:09 Heat of formation + Delta-G solvation = -16.080508 kcal Electronic energy + Delta-G solvation = -17207.125746 eV Core-core repulsion = 14762.577899 eV Total energy + Delta-G solvation = -2444.547848 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.15741 -36.70520 -35.24687 -33.83910 -32.26414 -30.54900 -27.77739 -27.11725 -25.51736 -23.27385 -22.42895 -21.55856 -19.61703 -18.12370 -17.42646 -16.64089 -15.99406 -15.86098 -15.53157 -15.33295 -14.85781 -14.49965 -14.08270 -14.05261 -13.58085 -13.02580 -12.88986 -12.65885 -12.56052 -12.44947 -12.26452 -12.05300 -11.98249 -11.85097 -11.55207 -11.39137 -11.23957 -10.87373 -10.64314 -10.33295 -9.57641 -8.42177 -7.74239 -5.21698 1.44419 1.47554 1.55341 2.54841 3.40005 3.69594 3.71643 4.08919 4.17391 4.19770 4.33266 4.41547 4.54056 4.65185 4.67804 4.80556 4.91048 4.93742 5.00298 5.00883 5.07478 5.15903 5.18823 5.26925 5.33003 5.49544 5.57358 5.59914 5.62882 5.73980 5.81126 5.85278 5.90754 6.25397 6.53436 6.64628 7.27536 7.99336 8.53999 9.31509 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.017986 B = 0.013807 C = 0.008927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.362986 B = 2027.541246 C = 3135.739473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.101 4.101 3 H 0.078 0.922 4 C -0.101 4.101 5 C -0.134 4.134 6 C 0.178 3.822 7 N -0.594 5.594 8 C -0.218 4.218 9 H 0.073 0.927 10 C -0.055 4.055 11 N -0.940 5.940 12 Si 0.949 3.051 13 H -0.265 1.265 14 H -0.296 1.296 15 H -0.299 1.299 16 C 0.171 3.829 17 H 0.001 0.999 18 C -0.093 4.093 19 C -0.120 4.120 20 C 0.071 3.929 21 N -0.860 5.860 22 H 0.057 0.943 23 H 0.053 0.947 24 H 0.042 0.958 25 H 0.072 0.928 26 H 0.045 0.955 27 H 0.057 0.943 28 H 0.056 0.944 29 H -0.015 1.015 30 H 0.051 0.949 31 H 0.243 0.757 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.034 0.966 35 H 0.069 0.931 36 H 0.024 0.976 37 H 0.075 0.925 38 H 0.339 0.661 39 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.407 10.381 0.367 10.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.121 4.121 3 H 0.097 0.903 4 C -0.139 4.139 5 C -0.173 4.173 6 C 0.052 3.948 7 N -0.318 5.318 8 C -0.348 4.348 9 H 0.090 0.910 10 C -0.249 4.249 11 N -0.588 5.588 12 Si 0.779 3.221 13 H -0.189 1.189 14 H -0.224 1.224 15 H -0.226 1.226 16 C 0.065 3.935 17 H 0.019 0.981 18 C -0.131 4.131 19 C -0.158 4.158 20 C -0.060 4.060 21 N -0.391 5.391 22 H 0.076 0.924 23 H 0.072 0.928 24 H 0.061 0.939 25 H 0.091 0.909 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.003 0.997 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.053 0.947 35 H 0.087 0.913 36 H 0.043 0.957 37 H 0.094 0.906 38 H 0.151 0.849 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.698 10.505 0.648 10.865 hybrid contribution -1.033 -1.495 -0.869 2.015 sum -3.731 9.010 -0.222 9.755 Atomic orbital electron populations 1.21694 0.94822 1.01225 1.00909 1.21540 0.96739 0.98540 0.95233 0.90324 1.21405 0.99294 0.95374 0.97792 1.22073 1.00495 0.96795 0.97970 1.20545 0.94446 0.94812 0.85005 1.44198 1.64974 1.06464 1.16136 1.19316 1.14661 0.92647 1.08212 0.90957 1.25770 0.98601 0.99536 1.00975 1.70151 1.32346 1.08773 1.47551 0.85455 0.78857 0.78716 0.79062 1.18877 1.22361 1.22614 1.20670 0.94288 0.84601 0.93933 0.98145 1.21455 0.99834 0.98499 0.93311 1.21719 0.98563 1.01795 0.93710 1.21742 0.95332 0.98922 0.90006 1.58722 1.65859 1.09114 1.05356 0.92378 0.92802 0.93920 0.90935 0.93573 0.92409 0.92512 0.99686 0.93106 0.94732 0.92137 0.90933 0.94683 0.91273 0.95744 0.90632 0.84854 0.83874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.02 8.21 71.98 0.59 -3.42 16 2 C -0.10 -3.29 2.80 -10.72 -0.03 -3.32 16 3 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 4 C -0.10 -3.30 5.43 30.62 0.17 -3.14 16 5 C -0.13 -5.11 5.74 30.68 0.18 -4.94 16 6 C 0.18 8.69 5.24 86.36 0.45 9.14 16 7 N -0.59 -28.60 2.42 -675.20 -1.63 -30.23 16 8 C -0.22 -11.22 6.41 84.03 0.54 -10.68 16 9 H 0.07 3.62 5.62 -2.91 -0.02 3.61 16 10 C -0.05 -2.99 5.06 84.86 0.43 -2.56 16 11 N -0.94 -55.74 11.07 21.65 0.24 -55.50 16 12 Si 0.95 44.42 29.56 68.60 2.03 46.45 16 13 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 14 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 15 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 16 C 0.17 6.88 2.59 44.97 0.12 7.00 16 17 H 0.00 0.04 8.12 -2.39 -0.02 0.02 16 18 C -0.09 -3.30 3.42 30.59 0.10 -3.19 16 19 C -0.12 -4.56 4.99 30.59 0.15 -4.41 16 20 C 0.07 2.14 6.79 86.30 0.59 2.73 16 21 N -0.86 -24.91 9.62 -186.73 -1.80 -26.71 16 22 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.05 1.58 6.55 -2.39 -0.02 1.56 16 24 H 0.04 1.57 5.97 -2.39 -0.01 1.56 16 25 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.06 2.17 6.34 -2.39 -0.02 2.15 16 29 H -0.01 -0.80 8.14 -2.38 -0.02 -0.82 16 30 H 0.05 2.82 6.15 -2.39 -0.01 2.81 16 31 H 0.24 14.17 8.31 -92.70 -0.77 13.40 16 32 H 0.06 2.22 5.59 -2.39 -0.01 2.21 16 33 H 0.07 2.15 8.13 -2.38 -0.02 2.13 16 34 H 0.03 1.43 8.13 -2.38 -0.02 1.41 16 35 H 0.07 3.17 5.19 -2.39 -0.01 3.16 16 36 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.08 2.04 8.14 -2.39 -0.02 2.03 16 38 H 0.34 10.29 8.99 -89.69 -0.81 9.49 16 39 H 0.35 7.90 9.08 -89.69 -0.81 7.08 16 Total: -1.00 -60.43 288.01 1.53 -58.89 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: -0.59 Total: 23.90 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: 3.28 Total: -16.80 kcal Atomic # 7 Polarization: -109.25 SS G_CDS: -3.19 Total: -112.45 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -60.43 1.53 -58.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693418773.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.814 kcal (2) G-P(sol) polarization free energy of solvation -60.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds