Wall clock time and date at job start Mon Mar 30 2020 03:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47332 * 2 1 4 4 C 1.52995 * 109.47152 * 240.00111 * 2 1 3 5 5 C 1.50703 * 109.47218 * 175.54829 * 4 2 1 6 6 H 1.08004 * 119.99850 * 4.87079 * 5 4 2 7 7 C 1.37875 * 120.00207 * 184.86782 * 5 4 2 8 8 N 1.31514 * 120.00060 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99913 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47335 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47101 * 120.00304 * 9 7 5 12 12 H 1.48501 * 109.46915 * 239.99889 * 9 7 5 13 13 N 1.46899 * 109.46904 * 120.00003 * 2 1 3 14 14 C 1.46842 * 111.00234 * 58.43057 * 13 2 1 15 15 C 1.53032 * 109.52691 * 174.15884 * 14 13 2 16 16 C 1.53119 * 109.28018 * 59.17663 * 15 14 13 17 17 H 1.09000 * 109.52494 * 182.44437 * 16 15 14 18 18 N 1.46900 * 109.52070 * 62.25168 * 16 15 14 19 19 C 1.53125 * 109.16091 * 302.34970 * 16 15 14 20 20 H 1.09000 * 109.49809 * 297.67341 * 19 16 15 21 21 C 1.52994 * 109.50265 * 177.59522 * 19 16 15 22 22 C 1.46848 * 110.99886 * 294.17284 * 13 2 1 23 23 H 1.09006 * 109.47393 * 59.99860 * 1 2 3 24 24 H 1.08999 * 109.47332 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47581 * 299.99628 * 1 2 3 26 26 H 1.09001 * 109.47077 * 295.54915 * 4 2 1 27 27 H 1.09002 * 109.47164 * 55.54815 * 4 2 1 28 28 H 0.96998 * 120.00207 * 179.97438 * 8 7 5 29 29 H 1.09002 * 109.46573 * 54.14025 * 14 13 2 30 30 H 1.08997 * 109.46172 * 294.17604 * 14 13 2 31 31 H 1.09005 * 109.50413 * 299.23793 * 15 14 13 32 32 H 1.09002 * 109.53814 * 179.13470 * 15 14 13 33 33 H 1.00899 * 111.00522 * 60.31890 * 18 16 15 34 34 H 1.00900 * 110.99606 * 184.27436 * 18 16 15 35 35 H 1.09000 * 109.47624 * 60.07616 * 21 19 16 36 36 H 1.09003 * 109.47100 * 180.02562 * 21 19 16 37 37 H 1.08995 * 109.47228 * 300.07378 * 21 19 16 38 38 H 1.09004 * 109.42219 * 65.80922 * 22 13 2 39 39 H 1.08998 * 109.49551 * 305.84137 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 3.5429 -0.6264 -1.3056 6 1 4.0864 -0.1733 -0.4896 7 6 4.2242 -1.1182 -2.3988 8 7 3.5624 -1.6695 -3.3926 9 14 6.0873 -1.0013 -2.4683 10 1 6.5884 -0.3437 -1.2348 11 1 6.6653 -2.3652 -2.5713 12 1 6.4892 -0.2025 -3.6539 13 7 2.0196 -0.6925 1.1994 14 6 1.5183 -2.0717 1.2523 15 6 2.1619 -2.8050 2.4313 16 6 1.8230 -2.0688 3.7304 17 1 2.3152 -2.5628 4.5681 18 7 0.3686 -2.0817 3.9369 19 6 2.3128 -0.6215 3.6304 20 1 3.3968 -0.6113 3.5168 21 6 1.9251 0.1379 4.9007 22 6 1.6657 0.0490 2.4165 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.7432 -1.7693 -1.2102 27 1 1.6129 -0.2555 -2.1374 28 1 4.0416 -2.0152 -4.1618 29 1 1.7696 -2.5853 0.3243 30 1 0.4358 -2.0601 1.3791 31 1 3.2435 -2.8291 2.2982 32 1 1.7784 -3.8242 2.4799 33 1 0.0215 -3.0266 4.0061 34 1 0.1143 -1.5425 4.7509 35 1 2.3851 -0.3409 5.7651 36 1 2.2736 1.1682 4.8288 37 1 0.8410 0.1274 5.0137 38 1 0.5823 0.0513 2.5375 39 1 2.0240 1.0752 2.3344 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695784125.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:09 Heat of formation + Delta-G solvation = -31.095572 kcal Electronic energy + Delta-G solvation = -16914.634624 eV Core-core repulsion = 14469.435674 eV Total energy + Delta-G solvation = -2445.198950 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.60744 -37.36674 -34.75679 -33.19497 -32.43876 -30.16670 -28.98449 -27.09039 -25.39305 -24.11931 -23.14227 -20.47289 -19.52502 -18.32560 -17.17136 -16.84730 -16.53104 -16.01492 -15.39985 -15.38309 -14.66467 -14.25963 -14.05662 -13.90899 -13.62090 -13.52220 -13.13791 -12.92134 -12.75332 -12.62238 -12.40019 -12.34601 -12.02049 -11.90746 -11.57694 -11.34373 -11.06100 -11.03176 -10.83597 -10.46143 -9.49694 -8.69532 -8.09160 -6.13951 1.40762 1.41345 1.55194 2.47797 3.18616 3.30845 3.73068 3.87491 3.99111 4.16382 4.28418 4.38103 4.50226 4.58535 4.62138 4.67984 4.72400 4.83660 4.87837 4.93924 5.02328 5.06861 5.16232 5.23795 5.24446 5.28927 5.34968 5.42801 5.55227 5.60317 5.75416 5.92340 6.35987 6.39042 6.59200 6.67076 6.74484 7.00728 7.51912 9.03225 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.031497 B = 0.007823 C = 0.007305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.754989 B = 3578.153876 C = 3831.821012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.095 3.905 3 H 0.058 0.942 4 C 0.036 3.964 5 C -0.497 4.497 6 H 0.057 0.943 7 C -0.007 4.007 8 N -0.941 5.941 9 Si 0.957 3.043 10 H -0.266 1.266 11 H -0.283 1.283 12 H -0.281 1.281 13 N -0.532 5.532 14 C 0.072 3.928 15 C -0.107 4.107 16 C 0.106 3.894 17 H 0.045 0.955 18 N -0.846 5.846 19 C -0.083 4.083 20 H 0.061 0.939 21 C -0.139 4.139 22 C 0.070 3.930 23 H 0.052 0.948 24 H 0.047 0.953 25 H 0.064 0.936 26 H -0.005 1.005 27 H -0.009 1.009 28 H 0.258 0.742 29 H 0.039 0.961 30 H 0.042 0.958 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.346 0.654 34 H 0.348 0.652 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.044 0.956 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.392 0.554 17.263 18.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.013 4.013 3 H 0.077 0.923 4 C -0.002 4.002 5 C -0.536 4.536 6 H 0.076 0.924 7 C -0.202 4.202 8 N -0.584 5.584 9 Si 0.783 3.217 10 H -0.190 1.190 11 H -0.209 1.209 12 H -0.207 1.207 13 N -0.255 5.255 14 C -0.056 4.056 15 C -0.146 4.146 16 C -0.006 4.006 17 H 0.063 0.937 18 N -0.380 5.380 19 C -0.103 4.103 20 H 0.080 0.920 21 C -0.197 4.197 22 C -0.058 4.058 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.082 0.918 26 H 0.013 0.987 27 H 0.009 0.991 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.159 0.841 34 H 0.163 0.837 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.880 0.825 16.382 17.113 hybrid contribution 0.350 -0.570 0.079 0.674 sum -4.530 0.255 16.461 17.075 Atomic orbital electron populations 1.22324 0.97478 1.01348 1.01538 1.21567 0.91881 0.97012 0.90889 0.92338 1.19078 0.95314 0.94208 0.91558 1.21531 0.93180 1.36299 1.02560 0.92429 1.25877 1.02945 0.95747 0.95668 1.70107 1.36993 1.42372 1.08917 0.85509 0.80594 0.77591 0.78001 1.18974 1.20881 1.20701 1.61920 1.59983 1.02139 1.01488 1.21778 0.97070 0.89374 0.97334 1.21592 1.00200 0.98434 0.94337 1.21200 0.88752 0.95129 0.95492 0.93714 1.58652 1.11838 1.19496 1.48020 1.21188 0.99550 0.94585 0.94937 0.92049 1.21744 1.02024 1.00114 0.95787 1.21995 0.98393 0.96139 0.89246 0.92880 0.93361 0.91755 0.98680 0.99075 0.93287 0.94296 0.94006 0.92698 0.91028 0.84091 0.83696 0.91631 0.92417 0.91473 0.93765 0.92763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.12 8.50 71.98 0.61 -5.51 16 2 C 0.09 4.12 2.29 44.91 0.10 4.22 16 3 H 0.06 2.59 8.07 -2.39 -0.02 2.58 16 4 C 0.04 1.93 4.27 29.85 0.13 2.06 16 5 C -0.50 -29.17 8.83 25.60 0.23 -28.94 16 6 H 0.06 3.37 7.73 -2.91 -0.02 3.34 16 7 C -0.01 -0.40 5.46 84.65 0.46 0.06 16 8 N -0.94 -59.10 13.29 21.45 0.28 -58.82 16 9 Si 0.96 46.51 29.54 68.60 2.03 48.54 16 10 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 12 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 13 N -0.53 -20.92 4.32 -871.17 -3.76 -24.69 16 14 C 0.07 2.71 4.48 86.32 0.39 3.10 16 15 C -0.11 -3.25 5.76 30.64 0.18 -3.08 16 16 C 0.11 2.50 3.14 45.00 0.14 2.64 16 17 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 18 N -0.85 -16.78 7.89 -168.34 -1.33 -18.11 16 19 C -0.08 -2.14 2.71 -10.74 -0.03 -2.17 16 20 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 21 C -0.14 -2.56 8.82 71.98 0.63 -1.93 16 22 C 0.07 2.19 4.19 86.32 0.36 2.56 16 23 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 24 H 0.05 1.78 6.51 -2.39 -0.02 1.77 16 25 H 0.06 2.04 6.67 -2.39 -0.02 2.02 16 26 H 0.00 -0.29 6.10 -2.39 -0.01 -0.30 16 27 H -0.01 -0.54 8.14 -2.39 -0.02 -0.55 16 28 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 29 H 0.04 1.77 5.97 -2.39 -0.01 1.75 16 30 H 0.04 1.51 6.15 -2.39 -0.01 1.49 16 31 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 32 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.35 5.88 9.04 -89.69 -0.81 5.07 16 34 H 0.35 5.52 6.96 -89.69 -0.62 4.90 16 35 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.07 1.10 6.54 -2.39 -0.02 1.08 16 38 H 0.04 1.35 6.29 -2.39 -0.02 1.33 16 39 H 0.05 1.72 8.07 -2.39 -0.02 1.70 16 Total: -1.00 -66.13 292.36 0.01 -66.12 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -0.41 Total: 13.94 kcal Atomic # 6 Polarization: -30.18 SS G_CDS: 3.20 Total: -26.98 kcal Atomic # 7 Polarization: -96.81 SS G_CDS: -4.81 Total: -101.61 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -66.13 0.01 -66.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695784125.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.023 kcal (2) G-P(sol) polarization free energy of solvation -66.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds