Wall clock time and date at job start Mon Mar 30 2020 03:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46967 * 2 1 4 4 C 1.52994 * 109.47013 * 239.99854 * 2 1 3 5 5 C 1.50701 * 109.47233 * 62.64974 * 4 2 1 6 6 H 1.07991 * 119.99911 * 4.87689 * 5 4 2 7 7 C 1.37876 * 119.99724 * 184.86757 * 5 4 2 8 8 N 1.31519 * 119.99681 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 120.00326 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.46760 * 89.99838 * 9 7 5 11 11 H 1.48499 * 109.46984 * 209.99845 * 9 7 5 12 12 H 1.48496 * 109.46991 * 330.00077 * 9 7 5 13 13 N 1.46904 * 109.47082 * 119.99489 * 2 1 3 14 14 C 1.46850 * 111.00151 * 298.01645 * 13 2 1 15 15 C 1.53031 * 109.51955 * 174.16069 * 14 13 2 16 16 H 1.08996 * 109.50770 * 299.23388 * 15 14 13 17 17 C 1.53008 * 109.50182 * 179.12043 * 15 14 13 18 18 C 1.53120 * 109.28144 * 59.18333 * 15 14 13 19 19 C 1.53117 * 109.15885 * 302.34075 * 18 15 14 20 20 H 1.08996 * 109.50884 * 177.59840 * 19 18 15 21 21 N 1.46900 * 109.50456 * 297.67787 * 19 18 15 22 22 C 1.46843 * 110.99733 * 173.80554 * 13 2 1 23 23 H 1.09000 * 109.47185 * 60.00126 * 1 2 3 24 24 H 1.09007 * 109.46799 * 300.00306 * 1 2 3 25 25 H 1.08997 * 109.47097 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46886 * 182.65357 * 4 2 1 27 27 H 1.08999 * 109.47077 * 302.64792 * 4 2 1 28 28 H 0.97000 * 120.00013 * 179.97438 * 8 7 5 29 29 H 1.08997 * 109.45955 * 294.17334 * 14 13 2 30 30 H 1.08995 * 109.45764 * 54.14286 * 14 13 2 31 31 H 1.08997 * 109.47001 * 59.99433 * 17 15 14 32 32 H 1.09003 * 109.47060 * 180.02562 * 17 15 14 33 33 H 1.09000 * 109.46674 * 300.00023 * 17 15 14 34 34 H 1.08994 * 109.52849 * 62.24532 * 18 15 14 35 35 H 1.08996 * 109.52474 * 182.43853 * 18 15 14 36 36 H 1.00903 * 111.00225 * 180.02562 * 21 19 18 37 37 H 1.00900 * 110.99981 * 303.94817 * 21 19 18 38 38 H 1.09004 * 109.46406 * 305.85428 * 22 13 2 39 39 H 1.09001 * 109.46436 * 65.82529 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5920 0.0260 -2.4788 6 1 1.0707 0.9665 -2.3791 7 6 1.8479 -0.4910 -3.7311 8 7 1.4565 0.1609 -4.8042 9 14 2.7493 -2.1180 -3.9036 10 1 1.7650 -3.2300 -3.9181 11 1 3.5216 -2.1240 -5.1719 12 1 3.6775 -2.2935 -2.7579 13 7 2.0197 -0.6924 1.1995 14 6 1.5880 0.0004 2.4202 15 6 1.9898 -0.8239 3.6453 16 1 1.5033 -1.7984 3.6038 17 6 1.5592 -0.0912 4.9177 18 6 3.5095 -1.0110 3.6526 19 6 3.9384 -1.6908 2.3494 20 1 5.0238 -1.7883 2.3298 21 7 3.3249 -3.0230 2.2662 22 6 3.4801 -0.8414 1.1618 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.1289 -0.7626 -1.2257 27 1 1.6384 -1.7343 -1.2732 28 1 1.6368 -0.2026 -5.6852 29 1 2.0639 0.9798 2.4695 30 1 0.5051 0.1233 2.4043 31 1 0.4778 0.0449 4.9103 32 1 1.8461 -0.6785 5.7899 33 1 2.0476 0.8824 4.9590 34 1 3.9958 -0.0389 3.7335 35 1 3.7958 -1.6341 4.4999 36 1 3.5935 -3.4923 1.4143 37 1 3.5587 -3.5799 3.0745 38 1 3.7714 -1.3300 0.2319 39 1 3.9470 0.1420 1.2169 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695824354.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:40 Heat of formation + Delta-G solvation = -31.623660 kcal Electronic energy + Delta-G solvation = -16745.430395 eV Core-core repulsion = 14300.208545 eV Total energy + Delta-G solvation = -2445.221849 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.51778 -37.10467 -34.85213 -34.50089 -32.21783 -30.09659 -28.78412 -27.44113 -25.69466 -24.00789 -22.27301 -20.60304 -20.06946 -19.12843 -16.93745 -16.66784 -16.44501 -15.89987 -15.62274 -15.19029 -15.07522 -14.67339 -14.36757 -14.09691 -13.55001 -13.35561 -13.12722 -12.95494 -12.77489 -12.62814 -12.53177 -12.34063 -11.90790 -11.76959 -11.59767 -11.40236 -11.39362 -11.03549 -10.89935 -10.70388 -9.30520 -9.00593 -8.27672 -6.29937 1.35660 1.36491 1.48733 2.36785 3.04211 3.07713 3.71087 3.86424 3.92061 4.11080 4.22576 4.32260 4.42621 4.50725 4.58826 4.66026 4.71154 4.79029 4.86731 4.91400 4.97744 5.01629 5.06234 5.09171 5.19526 5.27266 5.32979 5.37978 5.44397 5.56248 5.67678 5.68759 6.19825 6.35374 6.41743 6.53431 6.76789 6.80688 7.33510 8.88887 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.036224 B = 0.007669 C = 0.006700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.787707 B = 3650.399375 C = 4177.848547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.099 3.901 3 H 0.009 0.991 4 C 0.007 3.993 5 C -0.521 4.521 6 H 0.034 0.966 7 C 0.006 3.994 8 N -0.951 5.951 9 Si 0.950 3.050 10 H -0.269 1.269 11 H -0.285 1.285 12 H -0.250 1.250 13 N -0.518 5.518 14 C 0.058 3.942 15 C -0.074 4.074 16 H 0.078 0.922 17 C -0.141 4.141 18 C -0.104 4.104 19 C 0.100 3.900 20 H 0.044 0.956 21 N -0.833 5.833 22 C 0.054 3.946 23 H 0.042 0.958 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.015 0.985 27 H 0.019 0.981 28 H 0.265 0.735 29 H 0.016 0.984 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.051 0.949 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.340 0.660 37 H 0.345 0.655 38 H 0.061 0.939 39 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.878 -5.050 19.567 20.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.009 4.009 3 H 0.027 0.973 4 C -0.031 4.031 5 C -0.559 4.559 6 H 0.053 0.947 7 C -0.190 4.190 8 N -0.592 5.592 9 Si 0.773 3.227 10 H -0.194 1.194 11 H -0.211 1.211 12 H -0.174 1.174 13 N -0.242 5.242 14 C -0.070 4.070 15 C -0.093 4.093 16 H 0.097 0.903 17 C -0.199 4.199 18 C -0.141 4.141 19 C -0.012 4.012 20 H 0.062 0.938 21 N -0.365 5.365 22 C -0.075 4.075 23 H 0.061 0.939 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.033 0.967 27 H 0.037 0.963 28 H 0.074 0.926 29 H 0.035 0.965 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.152 0.848 37 H 0.159 0.841 38 H 0.080 0.920 39 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 3.977 -5.116 19.405 20.459 hybrid contribution 1.521 0.261 -1.039 1.860 sum 5.498 -4.855 18.366 19.777 Atomic orbital electron populations 1.21622 0.94269 1.01523 1.00377 1.21371 0.95932 0.93781 0.89857 0.97269 1.19507 0.95585 0.95788 0.92173 1.21384 1.36512 1.06959 0.91064 0.94721 1.25927 0.96391 1.01311 0.95402 1.70064 1.49173 1.41375 0.98589 0.85666 0.79464 0.79643 0.77881 1.19372 1.21073 1.17397 1.61868 1.10689 1.50470 1.01160 1.22236 1.00323 0.94369 0.90030 1.20978 0.95792 0.99563 0.92942 0.90319 1.21779 1.01305 1.00163 0.96652 1.21657 0.95994 1.00186 0.96306 1.21307 0.95019 0.90276 0.94588 0.93799 1.58458 1.66954 1.03633 1.07437 1.22208 0.88399 0.97800 0.99070 0.93912 0.92061 0.92802 0.96724 0.96297 0.92589 0.96547 0.90983 0.92571 0.91325 0.92939 0.92004 0.90250 0.84761 0.84145 0.92017 0.95919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.80 8.81 71.98 0.63 -4.17 16 2 C 0.10 4.15 2.13 44.91 0.10 4.25 16 3 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 4 C 0.01 0.35 3.21 29.85 0.10 0.44 16 5 C -0.52 -30.58 8.85 25.60 0.23 -30.35 16 6 H 0.03 2.23 7.33 -2.92 -0.02 2.21 16 7 C 0.01 0.37 5.47 84.65 0.46 0.83 16 8 N -0.95 -60.52 13.96 21.45 0.30 -60.22 16 9 Si 0.95 45.54 27.38 68.60 1.88 47.42 16 10 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 12 H -0.25 -11.21 6.68 99.48 0.66 -10.54 16 13 N -0.52 -18.02 4.38 -871.13 -3.81 -21.83 16 14 C 0.06 1.69 4.54 86.32 0.39 2.08 16 15 C -0.07 -1.68 2.72 -10.74 -0.03 -1.71 16 16 H 0.08 2.01 7.73 -2.39 -0.02 1.99 16 17 C -0.14 -2.51 9.20 71.98 0.66 -1.84 16 18 C -0.10 -2.12 4.92 30.67 0.15 -1.97 16 19 C 0.10 2.39 3.60 44.97 0.16 2.55 16 20 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 21 N -0.83 -19.05 8.47 -168.46 -1.43 -20.47 16 22 C 0.05 1.74 4.72 86.33 0.41 2.14 16 23 H 0.04 1.90 6.89 -2.39 -0.02 1.89 16 24 H 0.06 2.06 6.32 -2.38 -0.02 2.04 16 25 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.01 0.71 5.44 -2.39 -0.01 0.70 16 27 H 0.02 0.93 7.30 -2.39 -0.02 0.91 16 28 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 29 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.07 2.09 6.07 -2.39 -0.01 2.08 16 31 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.34 7.96 9.04 -89.69 -0.81 7.15 16 37 H 0.34 6.01 8.99 -89.69 -0.81 5.20 16 38 H 0.06 2.23 5.81 -2.38 -0.01 2.22 16 39 H 0.02 0.74 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -65.99 293.87 -0.44 -66.43 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -0.63 Total: 16.42 kcal Atomic # 6 Polarization: -31.01 SS G_CDS: 3.26 Total: -27.75 kcal Atomic # 7 Polarization: -97.58 SS G_CDS: -4.94 Total: -102.52 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.88 Total: 47.42 kcal Total: -65.99 -0.44 -66.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695824354.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.807 kcal (2) G-P(sol) polarization free energy of solvation -65.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds