Wall clock time and date at job start Mon Mar 30 2020 03:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47021 * 2 1 4 4 C 1.53001 * 109.47643 * 239.99787 * 2 1 3 5 5 C 1.50694 * 109.47435 * 168.61519 * 4 2 1 6 6 H 1.08000 * 119.99937 * 354.04000 * 5 4 2 7 7 C 1.37880 * 120.00153 * 174.03558 * 5 4 2 8 8 N 1.31512 * 119.99828 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00224 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46834 * 89.99976 * 9 7 5 11 11 H 1.48500 * 109.47092 * 209.99839 * 9 7 5 12 12 H 1.48494 * 109.46904 * 330.00400 * 9 7 5 13 13 N 1.46905 * 109.47207 * 119.99247 * 2 1 3 14 14 C 1.46849 * 110.99444 * 86.58630 * 13 2 1 15 15 C 1.53048 * 109.57097 * 185.80744 * 14 13 2 16 16 C 1.53117 * 109.27487 * 300.91220 * 15 14 13 17 17 H 1.09008 * 109.51918 * 177.49636 * 16 15 14 18 18 N 1.46889 * 109.52573 * 297.62248 * 16 15 14 19 19 C 1.53123 * 109.20849 * 57.56356 * 16 15 14 20 20 C 1.46840 * 111.00116 * 210.79053 * 13 2 1 21 21 H 1.09000 * 109.47101 * 294.18161 * 20 13 2 22 22 C 1.53005 * 109.46212 * 54.15101 * 20 13 2 23 23 H 1.08996 * 109.47012 * 294.99230 * 1 2 3 24 24 H 1.08992 * 109.47063 * 55.00233 * 1 2 3 25 25 H 1.09003 * 109.46745 * 174.99890 * 1 2 3 26 26 H 1.09000 * 109.46778 * 288.61840 * 4 2 1 27 27 H 1.09004 * 109.46900 * 48.61016 * 4 2 1 28 28 H 0.96997 * 120.00569 * 180.02562 * 8 7 5 29 29 H 1.08995 * 109.46402 * 305.85268 * 14 13 2 30 30 H 1.08998 * 109.46557 * 65.83449 * 14 13 2 31 31 H 1.09000 * 109.55556 * 180.94472 * 15 14 13 32 32 H 1.08994 * 109.45184 * 60.82786 * 15 14 13 33 33 H 1.00901 * 111.00667 * 299.87290 * 18 16 15 34 34 H 1.00904 * 111.00028 * 63.82988 * 18 16 15 35 35 H 1.09002 * 109.50271 * 62.31799 * 19 16 15 36 36 H 1.09005 * 109.49699 * 182.39492 * 19 16 15 37 37 H 1.08994 * 109.47320 * 171.36835 * 22 20 13 38 38 H 1.08997 * 109.46675 * 291.37515 * 22 20 13 39 39 H 1.09006 * 109.47121 * 51.36925 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5207 -0.4830 -1.3974 6 1 4.0274 0.1987 -0.7305 7 6 4.2286 -1.1355 -2.3845 8 7 3.6115 -1.9654 -3.1969 9 14 6.0638 -0.8397 -2.5688 10 1 6.8088 -1.8165 -1.7345 11 1 6.4517 -1.0072 -3.9924 12 1 6.3896 0.5397 -2.1258 13 7 2.0197 -0.6924 1.1996 14 6 2.1181 -2.1392 0.9686 15 6 2.4905 -2.8429 2.2757 16 6 3.8275 -2.2945 2.7819 17 1 4.0749 -2.7609 3.7355 18 7 4.8817 -2.5902 1.8026 19 6 3.7124 -0.7790 2.9680 20 6 3.3054 -0.1364 1.6401 21 1 4.0672 -0.3426 0.8882 22 6 3.1697 1.3762 1.8263 23 1 -0.3633 0.4342 0.9314 24 1 -0.3633 0.5894 -0.8418 25 1 -0.3633 -1.0238 -0.0896 26 1 1.8519 -1.7906 -1.1535 27 1 1.5206 -0.3381 -2.1275 28 1 4.1094 -2.4248 -3.8911 29 1 1.1591 -2.5164 0.6136 30 1 2.8855 -2.3362 0.2200 31 1 2.5799 -3.9150 2.1003 32 1 1.7162 -2.6587 3.0204 33 1 4.9753 -3.5849 1.6612 34 1 4.7076 -2.1156 0.9294 35 1 2.9579 -0.5615 3.7240 36 1 4.6741 -0.3776 3.2876 37 1 4.0718 1.7667 2.2972 38 1 3.0322 1.8509 0.8548 39 1 2.3083 1.5885 2.4596 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695825671.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:24 Heat of formation + Delta-G solvation = -6.746084 kcal Electronic energy + Delta-G solvation = -17547.109519 eV Core-core repulsion = 15102.966443 eV Total energy + Delta-G solvation = -2444.143077 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.41293 -35.52448 -32.86091 -32.11794 -30.52502 -28.10799 -27.43348 -26.48387 -23.42385 -22.97159 -20.96194 -19.23758 -18.04043 -16.35114 -15.83760 -15.19805 -14.73858 -14.29549 -14.11083 -13.86765 -13.40542 -12.74712 -12.29171 -12.10397 -11.85237 -11.63418 -11.47654 -11.39047 -11.29107 -11.16271 -10.93089 -10.59377 -10.56189 -10.24697 -10.08307 -9.82985 -9.59133 -9.23142 -8.97170 -8.42450 -8.20561 -7.17998 -6.06586 -4.08934 3.28273 3.35604 3.38974 4.40359 4.69451 5.08528 5.24524 5.28935 5.35607 5.56752 5.68057 5.87108 5.96421 6.06924 6.10156 6.15163 6.21884 6.24453 6.29122 6.37669 6.44443 6.48496 6.59743 6.65543 6.77520 6.84130 6.87799 6.92218 7.16201 7.53888 7.62889 7.66871 7.88800 7.95279 8.08219 8.14117 8.35664 8.97952 9.54948 11.03661 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.021487 B = 0.012628 C = 0.010518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.810645 B = 2216.701084 C = 2661.444786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.069 3.931 3 H 0.072 0.928 4 C -0.007 4.007 5 C -0.520 4.520 6 H 0.060 0.940 7 C 0.062 3.938 8 N -0.891 5.891 9 Si 0.881 3.119 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.273 1.273 13 N -0.520 5.520 14 C 0.052 3.948 15 C -0.151 4.151 16 C 0.092 3.908 17 H 0.068 0.932 18 N -0.851 5.851 19 C -0.102 4.102 20 C 0.067 3.933 21 H 0.075 0.925 22 C -0.143 4.143 23 H 0.045 0.955 24 H 0.047 0.953 25 H 0.044 0.956 26 H 0.031 0.969 27 H 0.011 0.989 28 H 0.260 0.740 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.332 0.668 34 H 0.356 0.644 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.049 0.951 38 H 0.059 0.941 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.776 0.734 9.736 9.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.039 4.039 3 H 0.090 0.910 4 C -0.045 4.045 5 C -0.558 4.558 6 H 0.078 0.922 7 C -0.140 4.140 8 N -0.530 5.530 9 Si 0.709 3.291 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.198 1.198 13 N -0.245 5.245 14 C -0.077 4.077 15 C -0.191 4.191 16 C -0.020 4.020 17 H 0.086 0.914 18 N -0.382 5.382 19 C -0.140 4.140 20 C -0.041 4.041 21 H 0.093 0.907 22 C -0.201 4.201 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.049 0.951 27 H 0.030 0.970 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.144 0.856 34 H 0.172 0.828 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.586 1.066 10.471 10.644 hybrid contribution 0.758 -0.551 -1.517 1.783 sum -0.829 0.515 8.955 9.008 Atomic orbital electron populations 1.21755 0.96753 1.00669 0.99896 1.21933 0.93199 0.98532 0.90203 0.90987 1.19820 0.95883 0.96718 0.92097 1.21303 0.93585 1.25627 1.15247 0.92181 1.24987 0.98000 0.95252 0.95768 1.69962 1.35810 1.28337 1.18882 0.86757 0.86099 0.78933 0.77348 1.20276 1.21380 1.19825 1.62292 1.26340 1.02756 1.33081 1.22069 1.01399 0.88651 0.95549 1.22420 0.98909 0.98744 0.99061 1.21397 0.89045 0.96160 0.95410 0.91389 1.59087 1.48053 1.14303 1.16796 1.21645 1.00499 0.94063 0.97790 1.21767 0.92478 0.93643 0.96217 0.90736 1.21886 1.00779 0.95778 1.01627 0.93607 0.93434 0.93729 0.95106 0.97034 0.93037 0.92020 0.91641 0.92660 0.91807 0.85609 0.82757 0.91827 0.91804 0.93184 0.92164 0.92761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 9.37 37.16 0.35 -2.02 16 2 C 0.07 1.40 2.24 -67.71 -0.15 1.25 16 3 H 0.07 1.48 5.19 -51.93 -0.27 1.21 16 4 C -0.01 -0.18 3.95 -27.89 -0.11 -0.29 16 5 C -0.52 -13.51 7.04 -34.44 -0.24 -13.75 16 6 H 0.06 1.54 5.68 -52.49 -0.30 1.24 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 8 N -0.89 -25.61 13.29 55.43 0.74 -24.87 16 9 Si 0.88 21.03 29.54 -169.99 -5.02 16.00 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.52 -9.71 4.31 -218.75 -0.94 -10.65 16 14 C 0.05 0.98 3.75 -3.83 -0.01 0.96 16 15 C -0.15 -2.40 5.77 -26.65 -0.15 -2.55 16 16 C 0.09 1.43 3.71 -67.59 -0.25 1.18 16 17 H 0.07 0.97 8.14 -51.92 -0.42 0.54 16 18 N -0.85 -14.51 9.17 -4.56 -0.04 -14.56 16 19 C -0.10 -1.61 5.06 -26.65 -0.13 -1.75 16 20 C 0.07 1.21 1.69 -67.72 -0.11 1.10 16 21 H 0.08 1.57 3.80 -51.93 -0.20 1.38 16 22 C -0.14 -2.35 8.66 37.16 0.32 -2.03 16 23 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.04 0.80 7.59 -51.93 -0.39 0.40 16 26 H 0.03 0.80 5.65 -51.93 -0.29 0.51 16 27 H 0.01 0.30 8.10 -51.93 -0.42 -0.12 16 28 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.06 1.20 7.18 -51.93 -0.37 0.82 16 30 H 0.07 1.45 4.65 -51.93 -0.24 1.21 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.33 5.18 9.04 -39.29 -0.36 4.82 16 34 H 0.36 7.06 5.61 -39.29 -0.22 6.84 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.05 0.74 8.13 -51.93 -0.42 0.31 16 38 H 0.06 1.05 6.25 -51.93 -0.32 0.73 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 284.65 15.07 4.29 4.29 Total: -1.00 -27.06 284.65 -7.91 -34.97 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -6.33 Total: 11.14 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: -0.60 Total: -16.32 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: -0.25 Total: -50.08 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -27.06 -7.91 -34.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695825671.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.224 kcal (2) G-P(sol) polarization free energy of solvation -27.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds