Wall clock time and date at job start Mon Mar 30 2020 03:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47021 * 2 1 4 4 C 1.53001 * 109.47643 * 239.99787 * 2 1 3 5 5 C 1.50694 * 109.47435 * 168.61519 * 4 2 1 6 6 H 1.08000 * 119.99937 * 354.04000 * 5 4 2 7 7 C 1.37880 * 120.00153 * 174.03558 * 5 4 2 8 8 N 1.31512 * 119.99828 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00224 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46834 * 89.99976 * 9 7 5 11 11 H 1.48500 * 109.47092 * 209.99839 * 9 7 5 12 12 H 1.48494 * 109.46904 * 330.00400 * 9 7 5 13 13 N 1.46905 * 109.47207 * 119.99247 * 2 1 3 14 14 C 1.46849 * 110.99444 * 86.58630 * 13 2 1 15 15 C 1.53048 * 109.57097 * 185.80744 * 14 13 2 16 16 C 1.53117 * 109.27487 * 300.91220 * 15 14 13 17 17 H 1.09008 * 109.51918 * 177.49636 * 16 15 14 18 18 N 1.46889 * 109.52573 * 297.62248 * 16 15 14 19 19 C 1.53123 * 109.20849 * 57.56356 * 16 15 14 20 20 C 1.46840 * 111.00116 * 210.79053 * 13 2 1 21 21 H 1.09000 * 109.47101 * 294.18161 * 20 13 2 22 22 C 1.53005 * 109.46212 * 54.15101 * 20 13 2 23 23 H 1.08996 * 109.47012 * 294.99230 * 1 2 3 24 24 H 1.08992 * 109.47063 * 55.00233 * 1 2 3 25 25 H 1.09003 * 109.46745 * 174.99890 * 1 2 3 26 26 H 1.09000 * 109.46778 * 288.61840 * 4 2 1 27 27 H 1.09004 * 109.46900 * 48.61016 * 4 2 1 28 28 H 0.96997 * 120.00569 * 180.02562 * 8 7 5 29 29 H 1.08995 * 109.46402 * 305.85268 * 14 13 2 30 30 H 1.08998 * 109.46557 * 65.83449 * 14 13 2 31 31 H 1.09000 * 109.55556 * 180.94472 * 15 14 13 32 32 H 1.08994 * 109.45184 * 60.82786 * 15 14 13 33 33 H 1.00901 * 111.00667 * 299.87290 * 18 16 15 34 34 H 1.00904 * 111.00028 * 63.82988 * 18 16 15 35 35 H 1.09002 * 109.50271 * 62.31799 * 19 16 15 36 36 H 1.09005 * 109.49699 * 182.39492 * 19 16 15 37 37 H 1.08994 * 109.47320 * 171.36835 * 22 20 13 38 38 H 1.08997 * 109.46675 * 291.37515 * 22 20 13 39 39 H 1.09006 * 109.47121 * 51.36925 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5207 -0.4830 -1.3974 6 1 4.0274 0.1987 -0.7305 7 6 4.2286 -1.1355 -2.3845 8 7 3.6115 -1.9654 -3.1969 9 14 6.0638 -0.8397 -2.5688 10 1 6.8088 -1.8165 -1.7345 11 1 6.4517 -1.0072 -3.9924 12 1 6.3896 0.5397 -2.1258 13 7 2.0197 -0.6924 1.1996 14 6 2.1181 -2.1392 0.9686 15 6 2.4905 -2.8429 2.2757 16 6 3.8275 -2.2945 2.7819 17 1 4.0749 -2.7609 3.7355 18 7 4.8817 -2.5902 1.8026 19 6 3.7124 -0.7790 2.9680 20 6 3.3054 -0.1364 1.6401 21 1 4.0672 -0.3426 0.8882 22 6 3.1697 1.3762 1.8263 23 1 -0.3633 0.4342 0.9314 24 1 -0.3633 0.5894 -0.8418 25 1 -0.3633 -1.0238 -0.0896 26 1 1.8519 -1.7906 -1.1535 27 1 1.5206 -0.3381 -2.1275 28 1 4.1094 -2.4248 -3.8911 29 1 1.1591 -2.5164 0.6136 30 1 2.8855 -2.3362 0.2200 31 1 2.5799 -3.9150 2.1003 32 1 1.7162 -2.6587 3.0204 33 1 4.9753 -3.5849 1.6612 34 1 4.7076 -2.1156 0.9294 35 1 2.9579 -0.5615 3.7240 36 1 4.6741 -0.3776 3.2876 37 1 4.0718 1.7667 2.2972 38 1 3.0322 1.8509 0.8548 39 1 2.3083 1.5885 2.4596 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695825671.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:24 Heat of formation + Delta-G solvation = -25.132137 kcal Electronic energy + Delta-G solvation = -17547.906798 eV Core-core repulsion = 15102.966443 eV Total energy + Delta-G solvation = -2444.940356 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.88171 -37.03440 -34.73746 -33.67098 -32.01993 -29.48153 -29.36138 -27.80079 -25.10893 -24.67307 -22.39756 -20.74792 -19.55071 -18.37823 -17.24040 -16.69419 -16.54594 -15.86217 -15.61111 -15.27290 -14.83267 -14.45945 -13.90540 -13.65849 -13.38443 -13.34481 -12.97752 -12.80870 -12.74389 -12.63299 -12.52069 -12.42793 -12.17189 -11.88745 -11.63635 -11.46568 -11.13410 -10.86547 -10.79150 -10.51475 -9.54342 -8.79733 -8.17085 -6.24011 1.36953 1.39509 1.47252 2.39506 3.12356 3.25919 3.77218 3.93978 4.03905 4.20197 4.30544 4.46957 4.55851 4.66549 4.71272 4.72389 4.79875 4.90908 4.94748 5.00754 5.05461 5.08720 5.20317 5.22854 5.29757 5.35603 5.36126 5.40740 5.51910 5.66162 5.70303 5.85742 6.26966 6.32408 6.47582 6.55909 6.58142 6.90578 7.43114 8.93778 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.021487 B = 0.012628 C = 0.010518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.810645 B = 2216.701084 C = 2661.444786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.074 3.926 3 H 0.071 0.929 4 C 0.001 3.999 5 C -0.513 4.513 6 H 0.063 0.937 7 C 0.012 3.988 8 N -0.929 5.929 9 Si 0.941 3.059 10 H -0.271 1.271 11 H -0.290 1.290 12 H -0.267 1.267 13 N -0.507 5.507 14 C 0.056 3.944 15 C -0.142 4.142 16 C 0.091 3.909 17 H 0.092 0.908 18 N -0.855 5.855 19 C -0.096 4.096 20 C 0.063 3.937 21 H 0.042 0.958 22 C -0.139 4.139 23 H 0.067 0.933 24 H 0.050 0.950 25 H 0.039 0.961 26 H 0.010 0.990 27 H -0.021 1.021 28 H 0.259 0.741 29 H 0.050 0.950 30 H 0.029 0.971 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.338 0.662 34 H 0.338 0.662 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.043 0.957 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.426 1.267 11.983 12.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.035 4.035 3 H 0.089 0.911 4 C -0.037 4.037 5 C -0.551 4.551 6 H 0.081 0.919 7 C -0.186 4.186 8 N -0.570 5.570 9 Si 0.767 3.233 10 H -0.197 1.197 11 H -0.216 1.216 12 H -0.192 1.192 13 N -0.231 5.231 14 C -0.072 4.072 15 C -0.182 4.182 16 C -0.020 4.020 17 H 0.110 0.890 18 N -0.385 5.385 19 C -0.134 4.134 20 C -0.045 4.045 21 H 0.060 0.940 22 C -0.196 4.196 23 H 0.086 0.914 24 H 0.070 0.930 25 H 0.058 0.942 26 H 0.028 0.972 27 H -0.002 1.002 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.047 0.953 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.151 0.849 34 H 0.153 0.847 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.233 1.601 12.747 12.907 hybrid contribution 0.628 -0.719 -2.211 2.408 sum -0.605 0.881 10.536 10.591 Atomic orbital electron populations 1.21676 0.94733 1.00688 1.01235 1.21835 0.94870 0.97887 0.88879 0.91114 1.19723 0.95168 0.95758 0.93034 1.21557 0.94353 1.24697 1.14532 0.91858 1.25698 1.01911 0.95229 0.95725 1.70085 1.37357 1.29768 1.19805 0.85806 0.81495 0.79021 0.76995 1.19677 1.21623 1.19193 1.62422 1.26779 1.02504 1.31431 1.21966 0.99588 0.89121 0.96564 1.22350 0.99563 0.98862 0.97382 1.21518 0.88344 0.96330 0.95851 0.88972 1.59127 1.48707 1.14647 1.16043 1.21618 1.01287 0.93909 0.96578 1.21818 0.90980 0.95076 0.96648 0.94014 1.21842 1.02289 0.94309 1.01145 0.91420 0.93047 0.94234 0.97220 1.00223 0.93212 0.93159 0.95283 0.91752 0.90302 0.84936 0.84722 0.90122 0.91134 0.91452 0.93832 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.35 9.37 71.98 0.67 -3.68 16 2 C 0.07 2.96 2.24 44.91 0.10 3.06 16 3 H 0.07 2.88 5.19 -2.39 -0.01 2.87 16 4 C 0.00 0.06 3.95 29.85 0.12 0.18 16 5 C -0.51 -27.23 7.04 25.60 0.18 -27.05 16 6 H 0.06 3.28 5.68 -2.91 -0.02 3.27 16 7 C 0.01 0.68 5.46 84.66 0.46 1.14 16 8 N -0.93 -55.00 13.29 21.45 0.28 -54.72 16 9 Si 0.94 43.76 29.54 68.60 2.03 45.79 16 10 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 12 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 13 N -0.51 -18.38 4.31 -846.00 -3.65 -22.02 16 14 C 0.06 2.11 3.75 86.33 0.32 2.43 16 15 C -0.14 -4.18 5.77 30.65 0.18 -4.01 16 16 C 0.09 2.59 3.71 45.00 0.17 2.76 16 17 H 0.09 2.25 8.14 -2.38 -0.02 2.24 16 18 N -0.85 -28.04 9.17 -168.35 -1.54 -29.58 16 19 C -0.10 -2.75 5.06 30.65 0.16 -2.59 16 20 C 0.06 2.18 1.69 44.94 0.08 2.26 16 21 H 0.04 1.75 3.80 -2.39 -0.01 1.74 16 22 C -0.14 -4.23 8.66 71.98 0.62 -3.60 16 23 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.05 1.71 8.14 -2.39 -0.02 1.70 16 25 H 0.04 1.39 7.59 -2.39 -0.02 1.37 16 26 H 0.01 0.52 5.65 -2.39 -0.01 0.51 16 27 H -0.02 -1.15 8.10 -2.38 -0.02 -1.17 16 28 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 29 H 0.05 1.96 7.18 -2.39 -0.02 1.95 16 30 H 0.03 1.32 4.65 -2.39 -0.01 1.30 16 31 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.08 2.12 8.14 -2.39 -0.02 2.11 16 33 H 0.34 10.16 9.04 -89.69 -0.81 9.35 16 34 H 0.34 13.38 5.61 -89.69 -0.50 12.88 16 35 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 37 H 0.07 1.80 8.13 -2.39 -0.02 1.78 16 38 H 0.04 1.46 6.25 -2.39 -0.01 1.45 16 39 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 Total: -1.00 -58.46 284.65 -0.09 -58.55 By element: Atomic # 1 Polarization: 31.36 SS G_CDS: -0.27 Total: 31.09 kcal Atomic # 6 Polarization: -32.16 SS G_CDS: 3.06 Total: -29.10 kcal Atomic # 7 Polarization: -101.42 SS G_CDS: -4.91 Total: -106.33 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -58.46 -0.09 -58.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695825671.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.418 kcal (2) G-P(sol) polarization free energy of solvation -58.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds