Wall clock time and date at job start Mon Mar 30 2020 03:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.46305 * 2 1 4 4 C 1.53043 * 109.46167 * 119.97704 * 2 1 3 5 5 C 1.53119 * 109.27738 * 179.18525 * 4 2 1 6 6 C 1.53120 * 109.16314 * 302.34482 * 5 4 2 7 7 H 1.08997 * 109.50507 * 177.63849 * 6 5 4 8 8 N 1.46905 * 109.50394 * 297.71560 * 6 5 4 9 9 C 1.53040 * 109.27494 * 57.65664 * 6 5 4 10 10 N 1.46840 * 109.52320 * 300.81795 * 9 6 5 11 11 C 1.46899 * 111.00096 * 185.84333 * 10 9 6 12 12 C 1.52997 * 109.47084 * 45.78680 * 11 10 9 13 13 C 1.53005 * 109.47034 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.47050 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00487 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00011 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00167 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 119.99855 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47020 * 90.00333 * 18 16 14 20 20 H 1.48501 * 109.47083 * 209.99990 * 18 16 14 21 21 H 1.48498 * 109.47575 * 330.00065 * 18 16 14 22 22 H 1.08990 * 109.47438 * 300.02118 * 1 2 3 23 23 H 1.09005 * 109.46809 * 60.02228 * 1 2 3 24 24 H 1.09003 * 109.46941 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.50199 * 59.24580 * 4 2 1 26 26 H 1.08995 * 109.53797 * 299.14865 * 4 2 1 27 27 H 1.09002 * 109.51905 * 182.44138 * 5 4 2 28 28 H 1.08992 * 109.52476 * 62.25418 * 5 4 2 29 29 H 1.00901 * 110.99869 * 300.00152 * 8 6 5 30 30 H 1.00896 * 110.99543 * 63.95274 * 8 6 5 31 31 H 1.08996 * 109.46462 * 60.83781 * 9 6 5 32 32 H 1.09005 * 109.45892 * 180.80587 * 9 6 5 33 33 H 1.09003 * 109.47682 * 165.79380 * 11 10 9 34 34 H 1.09010 * 109.46596 * 285.79210 * 11 10 9 35 35 H 1.08990 * 109.47500 * 300.00469 * 12 11 10 36 36 H 1.09001 * 109.46683 * 60.00670 * 12 11 10 37 37 H 1.09000 * 109.46994 * 300.00492 * 13 12 11 38 38 H 1.08998 * 109.47140 * 60.00123 * 13 12 11 39 39 H 0.96992 * 120.00127 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7210 1.2500 5 6 3.5709 -0.7364 1.2355 6 6 4.0545 -1.4192 -0.0469 7 1 5.1437 -1.3959 -0.0830 8 7 3.5930 -2.8137 -0.0640 9 6 3.4863 -0.6779 -1.2592 10 7 2.0191 -0.6918 -1.1994 11 6 1.4371 -0.1105 -2.4165 12 6 2.1495 -0.6804 -3.6448 13 6 1.5437 -0.0745 -4.9125 14 6 2.2449 -0.6363 -6.1223 15 1 3.0425 -1.3540 -5.9995 16 6 1.8682 -0.2340 -7.3862 17 7 2.4804 -0.7239 -8.4420 18 14 0.4881 1.0068 -7.5987 19 1 1.0531 2.3801 -7.6001 20 1 -0.2083 0.7569 -8.8863 21 1 -0.4776 0.8700 -6.4790 22 1 -0.3634 0.5141 0.8897 23 1 -0.3633 0.5135 -0.8902 24 1 -0.3633 -1.0277 0.0005 25 1 1.6657 -1.7447 1.2576 26 1 1.6895 -0.1989 2.1403 27 1 3.9378 -1.2867 2.1019 28 1 3.9457 0.2866 1.2671 29 1 3.9527 -3.3234 0.7290 30 1 2.5857 -2.8608 -0.0975 31 1 3.8403 0.3530 -1.2533 32 1 3.8172 -1.1702 -2.1737 33 1 0.3763 -0.3561 -2.4652 34 1 1.5588 0.9725 -2.3959 35 1 3.2102 -0.4348 -3.5962 36 1 2.0278 -1.7634 -3.6654 37 1 0.4828 -0.3198 -4.9612 38 1 1.6656 1.0084 -4.8917 39 1 2.2152 -0.4411 -9.3311 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700635775.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:19 Heat of formation + Delta-G solvation = -36.210047 kcal Electronic energy + Delta-G solvation = -16364.448668 eV Core-core repulsion = 13919.027938 eV Total energy + Delta-G solvation = -2445.420730 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.70273 -36.81430 -35.36681 -34.25317 -32.52350 -30.61348 -28.79378 -27.27869 -25.56737 -23.61865 -22.02990 -21.43114 -20.01788 -18.88885 -17.52083 -16.44223 -16.41809 -16.10623 -15.78090 -15.30116 -14.95654 -14.81520 -14.69129 -14.03066 -13.74481 -13.63209 -13.24044 -12.82849 -12.75765 -12.63721 -12.47858 -12.32078 -11.93799 -11.81049 -11.62076 -11.49321 -11.41983 -11.06212 -11.02325 -10.76272 -9.46754 -9.15020 -8.29401 -6.33815 1.34922 1.37445 1.49830 2.36270 2.91996 3.05621 3.70989 3.81456 3.87415 4.04087 4.14935 4.24889 4.33779 4.42115 4.46960 4.61132 4.64346 4.68451 4.77565 4.87476 4.91921 4.97211 5.01163 5.02625 5.06857 5.09769 5.27162 5.32028 5.41502 5.51507 5.59539 5.66245 6.12308 6.27524 6.31292 6.45116 6.74339 6.80006 7.30646 8.87839 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.039646 B = 0.005965 C = 0.005393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.084889 B = 4692.579890 C = 5190.754857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.074 3.926 3 H 0.032 0.968 4 C -0.106 4.106 5 C -0.151 4.151 6 C 0.099 3.901 7 H 0.081 0.919 8 N -0.846 5.846 9 C 0.052 3.948 10 N -0.531 5.531 11 C 0.066 3.934 12 C -0.092 4.092 13 C -0.009 4.009 14 C -0.533 4.533 15 H 0.027 0.973 16 C 0.002 3.998 17 N -0.953 5.953 18 Si 0.954 3.046 19 H -0.266 1.266 20 H -0.283 1.283 21 H -0.245 1.245 22 H 0.075 0.925 23 H 0.049 0.951 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.343 0.657 30 H 0.349 0.651 31 H 0.030 0.970 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.028 0.972 35 H 0.046 0.954 36 H 0.047 0.953 37 H 0.021 0.979 38 H 0.016 0.984 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.720 2.555 22.978 23.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.034 4.034 3 H 0.050 0.950 4 C -0.144 4.144 5 C -0.190 4.190 6 C -0.014 4.014 7 H 0.099 0.901 8 N -0.378 5.378 9 C -0.076 4.076 10 N -0.256 5.256 11 C -0.061 4.061 12 C -0.130 4.130 13 C -0.047 4.047 14 C -0.571 4.571 15 H 0.046 0.954 16 C -0.195 4.195 17 N -0.594 5.594 18 Si 0.777 3.223 19 H -0.191 1.191 20 H -0.208 1.208 21 H -0.169 1.169 22 H 0.094 0.906 23 H 0.068 0.932 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.101 0.899 27 H 0.097 0.903 28 H 0.082 0.918 29 H 0.157 0.843 30 H 0.164 0.836 31 H 0.048 0.952 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.046 0.954 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.039 0.961 38 H 0.035 0.965 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.474 2.007 22.144 22.372 hybrid contribution -0.303 1.389 -0.101 1.426 sum -2.777 3.396 22.044 22.476 Atomic orbital electron populations 1.21874 0.93566 1.02624 1.02160 1.21777 0.96148 0.95090 0.90350 0.95042 1.21599 0.95173 1.01204 0.96387 1.22375 0.96387 1.01696 0.98577 1.21409 0.98792 0.88355 0.92817 0.90052 1.58765 1.17081 1.12026 1.49936 1.22230 0.87870 0.97994 0.99506 1.61961 1.06804 1.54957 1.01878 1.22081 0.99450 0.95900 0.88689 1.21409 0.98702 0.99635 0.93207 1.19486 0.96216 0.95788 0.93164 1.21502 1.18725 1.25205 0.91708 0.95436 1.26073 0.99422 0.98572 0.95387 1.70081 1.44145 1.46254 0.98917 0.85599 0.79527 0.78945 0.78213 1.19133 1.20821 1.16851 0.90581 0.93204 0.91929 0.91315 0.89865 0.90325 0.91785 0.84335 0.83594 0.95221 0.91439 0.90272 0.95388 0.93518 0.93425 0.96070 0.96546 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 8.78 71.98 0.63 -2.18 16 2 C 0.07 1.61 2.40 44.94 0.11 1.72 16 3 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 4 C -0.11 -1.78 5.04 30.65 0.15 -1.62 16 5 C -0.15 -2.54 5.67 30.67 0.17 -2.36 16 6 C 0.10 2.17 3.71 44.97 0.17 2.33 16 7 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 8 N -0.85 -18.90 9.18 -168.45 -1.55 -20.45 16 9 C 0.05 1.47 4.50 86.33 0.39 1.86 16 10 N -0.53 -14.59 3.94 -871.11 -3.43 -18.02 16 11 C 0.07 2.15 4.36 86.30 0.38 2.53 16 12 C -0.09 -3.79 4.40 30.60 0.13 -3.66 16 13 C -0.01 -0.42 4.04 29.85 0.12 -0.30 16 14 C -0.53 -32.12 9.66 25.60 0.25 -31.88 16 15 H 0.03 1.83 7.99 -2.91 -0.02 1.81 16 16 C 0.00 0.11 5.47 84.65 0.46 0.57 16 17 N -0.95 -61.55 13.96 21.45 0.30 -61.25 16 18 Si 0.95 45.28 27.47 68.60 1.88 47.16 16 19 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 20 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 21 H -0.25 -10.74 6.54 99.48 0.65 -10.09 16 22 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.05 1.07 6.55 -2.38 -0.02 1.05 16 24 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.07 1.17 6.90 -2.39 -0.02 1.16 16 26 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.34 5.95 9.04 -89.69 -0.81 5.14 16 30 H 0.35 8.15 6.76 -89.70 -0.61 7.54 16 31 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.07 2.30 5.81 -2.38 -0.01 2.29 16 33 H 0.08 2.48 6.84 -2.39 -0.02 2.47 16 34 H 0.03 0.90 8.08 -2.38 -0.02 0.88 16 35 H 0.05 1.98 6.21 -2.39 -0.01 1.97 16 36 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.02 1.00 7.20 -2.39 -0.02 0.98 16 38 H 0.02 0.76 7.57 -2.39 -0.02 0.75 16 39 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 Total: -1.00 -67.01 293.88 -0.28 -67.29 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -0.45 Total: 18.25 kcal Atomic # 6 Polarization: -35.95 SS G_CDS: 2.97 Total: -32.98 kcal Atomic # 7 Polarization: -95.04 SS G_CDS: -4.68 Total: -99.72 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.88 Total: 47.16 kcal Total: -67.01 -0.28 -67.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700635775.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.082 kcal (2) G-P(sol) polarization free energy of solvation -67.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds