Wall clock time and date at job start Mon Mar 30 2020 03:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.90354 * 2 1 4 4 C 1.53991 * 109.91851 * 238.89655 * 2 1 3 5 5 H 1.09006 * 110.30651 * 120.30740 * 4 2 1 6 6 N 1.46903 * 110.39173 * 358.18265 * 4 2 1 7 7 C 1.46906 * 110.99587 * 167.71299 * 6 4 2 8 8 C 1.53008 * 109.46564 * 179.97438 * 7 6 4 9 9 C 1.52995 * 109.46889 * 180.02562 * 8 7 6 10 10 C 1.50695 * 109.47528 * 179.97438 * 9 8 7 11 11 H 1.08005 * 119.99397 * 359.97438 * 10 9 8 12 12 C 1.37870 * 120.00794 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00489 * 179.97438 * 12 10 9 14 14 Si 1.86805 * 119.99615 * 359.97438 * 12 10 9 15 15 H 1.48507 * 109.47035 * 89.99952 * 14 12 10 16 16 H 1.48495 * 109.47177 * 210.00044 * 14 12 10 17 17 H 1.48499 * 109.47421 * 330.00093 * 14 12 10 18 18 C 1.54599 * 105.14112 * 239.22197 * 4 2 1 19 19 C 1.54933 * 102.92019 * 338.04386 * 18 4 2 20 20 N 1.48068 * 110.16138 * 121.05927 * 2 1 3 21 21 C 1.46902 * 111.15896 * 265.17196 * 20 2 1 22 22 H 1.09000 * 109.46636 * 175.08029 * 1 2 3 23 23 H 1.08996 * 109.46731 * 295.07514 * 1 2 3 24 24 H 1.08991 * 109.47196 * 55.07849 * 1 2 3 25 25 H 1.00894 * 110.99965 * 43.76326 * 6 4 2 26 26 H 1.09001 * 109.47297 * 299.99776 * 7 6 4 27 27 H 1.08999 * 109.46877 * 60.00223 * 7 6 4 28 28 H 1.09001 * 109.47219 * 299.99931 * 8 7 6 29 29 H 1.08998 * 109.47075 * 59.99797 * 8 7 6 30 30 H 1.09001 * 109.47635 * 300.00080 * 9 8 7 31 31 H 1.09010 * 109.47033 * 59.99813 * 9 8 7 32 32 H 0.97000 * 119.99905 * 179.97438 * 13 12 10 33 33 H 1.08999 * 110.72287 * 219.68245 * 18 4 2 34 34 H 1.09000 * 110.71958 * 96.40271 * 18 4 2 35 35 H 1.09004 * 110.66957 * 155.85077 * 19 18 4 36 36 H 1.09009 * 110.66901 * 278.81442 * 19 18 4 37 37 H 1.09000 * 109.47617 * 302.47864 * 21 20 2 38 38 H 1.09002 * 109.46828 * 62.47957 * 21 20 2 39 39 H 1.08997 * 109.46780 * 182.47572 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0249 0.0000 4 6 2.0547 -0.7479 -1.2396 5 1 2.6686 -0.0851 -1.8496 6 7 0.9351 -1.2761 -2.0306 7 6 1.3920 -1.7325 -3.3501 8 6 0.2008 -2.2751 -4.1426 9 6 0.6767 -2.7510 -5.5166 10 6 -0.4962 -3.2860 -6.2969 11 1 -1.4825 -3.2869 -5.8566 12 6 -0.3103 -3.7753 -7.5724 13 7 -1.3339 -4.2426 -8.2532 14 14 1.3956 -3.7744 -8.3336 15 1 2.0821 -5.0511 -8.0113 16 1 1.2800 -3.6328 -9.8073 17 1 2.1808 -2.6385 -7.7874 18 6 2.9102 -1.9074 -0.6796 19 6 3.2734 -1.4141 0.7434 20 7 2.0404 -0.7171 1.1907 21 6 2.3314 0.2160 2.2873 22 1 -0.3632 -1.0239 -0.0881 23 1 -0.3633 0.4355 0.9308 24 1 -0.3633 0.5882 -0.8425 25 1 0.2001 -0.5906 -2.1196 26 1 1.8373 -0.8965 -3.8896 27 1 2.1341 -2.5209 -3.2249 28 1 -0.2441 -3.1111 -3.6029 29 1 -0.5417 -1.4870 -4.2676 30 1 1.1219 -1.9153 -6.0565 31 1 1.4191 -3.5392 -5.3910 32 1 -1.2031 -4.5865 -9.1507 33 1 3.8089 -2.0486 -1.2801 34 1 2.3283 -2.8279 -0.6320 35 1 3.4976 -2.2569 1.3973 36 1 4.1149 -0.7221 0.7076 37 1 3.0526 0.9602 1.9496 38 1 1.4117 0.7143 2.5940 39 1 2.7456 -0.3342 3.1322 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719577969.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:34 Heat of formation + Delta-G solvation = -23.254191 kcal Electronic energy + Delta-G solvation = -15826.304329 eV Core-core repulsion = 13381.445407 eV Total energy + Delta-G solvation = -2444.858922 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.48640 -37.27084 -35.35816 -33.63340 -32.38181 -31.23449 -28.19970 -26.11906 -25.77484 -23.98108 -22.08497 -21.71546 -20.29029 -18.90519 -17.24169 -16.86639 -16.48831 -16.21271 -15.82606 -15.25991 -15.11715 -14.74212 -14.26784 -13.88458 -13.59357 -13.39356 -13.22622 -13.04797 -12.66797 -12.60068 -12.23421 -12.21080 -12.06918 -11.90281 -11.78961 -11.68052 -11.44610 -11.38289 -11.20105 -10.75905 -9.44554 -9.25421 -8.28861 -6.33218 1.36267 1.38172 1.50340 2.36903 3.02128 3.06313 3.20305 3.56423 3.81583 4.16016 4.22541 4.29534 4.33574 4.38732 4.51446 4.51741 4.62779 4.67514 4.73425 4.84598 4.87337 4.92211 5.00099 5.01189 5.02133 5.10106 5.15848 5.27323 5.50137 5.53253 5.62398 5.67167 5.94345 6.10828 6.19547 6.31028 6.50851 6.75217 7.31391 8.88251 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.056356 B = 0.004565 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.725973 B = 6132.616986 C = 6445.951286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.068 3.932 3 H 0.057 0.943 4 C 0.076 3.924 5 H 0.046 0.954 6 N -0.682 5.682 7 C 0.070 3.930 8 C -0.090 4.090 9 C -0.010 4.010 10 C -0.534 4.534 11 H 0.029 0.971 12 C 0.001 3.999 13 N -0.953 5.953 14 Si 0.955 3.045 15 H -0.266 1.266 16 H -0.283 1.283 17 H -0.246 1.246 18 C -0.115 4.115 19 C 0.040 3.960 20 N -0.531 5.531 21 C 0.017 3.983 22 H 0.061 0.939 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.346 0.654 26 H 0.029 0.971 27 H 0.068 0.932 28 H 0.048 0.952 29 H 0.046 0.954 30 H 0.020 0.980 31 H 0.018 0.982 32 H 0.266 0.734 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.053 0.947 37 H 0.031 0.969 38 H 0.071 0.929 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.821 10.612 19.251 24.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.041 4.041 3 H 0.075 0.925 4 C -0.034 4.034 5 H 0.064 0.936 6 N -0.316 5.316 7 C -0.059 4.059 8 C -0.128 4.128 9 C -0.048 4.048 10 C -0.572 4.572 11 H 0.047 0.953 12 C -0.196 4.196 13 N -0.594 5.594 14 Si 0.778 3.222 15 H -0.191 1.191 16 H -0.209 1.209 17 H -0.169 1.169 18 C -0.154 4.154 19 C -0.088 4.088 20 N -0.256 5.256 21 C -0.131 4.131 22 H 0.080 0.920 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.167 0.833 26 H 0.047 0.953 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.038 0.962 31 H 0.037 0.963 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.071 0.929 37 H 0.050 0.950 38 H 0.090 0.910 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.409 9.575 19.595 24.613 hybrid contribution 0.805 1.090 -1.471 2.000 sum 12.215 10.665 18.124 24.319 Atomic orbital electron populations 1.21606 0.93482 1.02592 1.01174 1.22473 0.97102 0.95330 0.89187 0.92468 1.22400 0.91933 0.95315 0.93785 0.93634 1.60759 1.11201 1.43971 1.15663 1.21896 0.97009 0.98732 0.88290 1.21255 0.97082 0.99634 0.94836 1.19486 0.95345 0.95928 0.93998 1.21528 0.95176 1.40457 1.00042 0.95269 1.26081 1.01618 0.94206 0.97657 1.70081 1.33208 1.43596 1.12542 0.85590 0.79402 0.80015 0.77205 1.19094 1.20922 1.16918 1.22553 0.98928 0.98442 0.95464 1.23197 0.91185 0.98700 0.95721 1.64672 1.26933 1.27085 1.06896 1.22549 1.01016 0.95062 0.94508 0.92006 0.92361 0.92013 0.83297 0.95287 0.91361 0.93360 0.93500 0.96208 0.96335 0.92497 0.90696 0.91213 0.89378 0.92886 0.95010 0.91048 0.90459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 8.28 71.98 0.60 -2.06 16 2 C 0.07 1.36 3.09 45.03 0.14 1.50 16 3 H 0.06 1.04 7.70 -2.39 -0.02 1.03 16 4 C 0.08 1.73 3.27 45.79 0.15 1.88 16 5 H 0.05 1.01 8.02 -2.38 -0.02 1.00 16 6 N -0.68 -18.46 5.23 -487.00 -2.55 -21.00 16 7 C 0.07 2.19 5.52 86.30 0.48 2.66 16 8 C -0.09 -3.60 5.41 30.60 0.17 -3.43 16 9 C -0.01 -0.46 4.04 29.84 0.12 -0.34 16 10 C -0.53 -31.74 9.66 25.60 0.25 -31.49 16 11 H 0.03 1.91 7.99 -2.91 -0.02 1.89 16 12 C 0.00 0.04 5.47 84.65 0.46 0.51 16 13 N -0.95 -61.10 13.96 21.45 0.30 -60.80 16 14 Si 0.95 44.89 27.47 68.60 1.88 46.77 16 15 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 16 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 17 H -0.25 -10.65 6.54 99.48 0.65 -10.00 16 18 C -0.12 -2.50 6.19 31.80 0.20 -2.30 16 19 C 0.04 0.72 6.55 86.65 0.57 1.29 16 20 N -0.53 -10.49 5.20 -883.64 -4.59 -15.09 16 21 C 0.02 0.25 9.42 127.69 1.20 1.45 16 22 H 0.06 1.53 7.47 -2.39 -0.02 1.51 16 23 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.06 1.15 7.10 -2.39 -0.02 1.13 16 25 H 0.35 8.86 6.31 -89.70 -0.57 8.29 16 26 H 0.03 0.87 8.11 -2.39 -0.02 0.85 16 27 H 0.07 2.13 7.72 -2.39 -0.02 2.11 16 28 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.02 0.91 7.20 -2.39 -0.02 0.90 16 31 H 0.02 0.85 7.57 -2.38 -0.02 0.83 16 32 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 33 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.07 1.80 8.06 -2.39 -0.02 1.78 16 35 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.05 0.83 7.99 -2.38 -0.02 0.81 16 37 H 0.03 0.42 8.00 -2.39 -0.02 0.41 16 38 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -66.36 304.06 -0.27 -66.63 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.37 Total: 13.83 kcal Atomic # 6 Polarization: -34.66 SS G_CDS: 4.32 Total: -30.33 kcal Atomic # 7 Polarization: -90.05 SS G_CDS: -6.84 Total: -96.89 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.88 Total: 46.77 kcal Total: -66.36 -0.27 -66.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719577969.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.372 kcal (2) G-P(sol) polarization free energy of solvation -66.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds