Wall clock time and date at job start Mon Mar 30 2020 03:35:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.09002 * 109.90354 * 2 1
4 4 C 1.53991 * 109.91851 * 238.89655 * 2 1 3
5 5 H 1.09006 * 110.30651 * 120.30740 * 4 2 1
6 6 N 1.46903 * 110.39173 * 358.18265 * 4 2 1
7 7 C 1.46906 * 110.99587 * 167.71299 * 6 4 2
8 8 C 1.53008 * 109.46564 * 179.97438 * 7 6 4
9 9 C 1.52995 * 109.46889 * 180.02562 * 8 7 6
10 10 C 1.50695 * 109.47528 * 179.97438 * 9 8 7
11 11 H 1.08005 * 119.99397 * 359.97438 * 10 9 8
12 12 C 1.37870 * 120.00794 * 180.02562 * 10 9 8
13 13 N 1.31516 * 120.00489 * 179.97438 * 12 10 9
14 14 Si 1.86805 * 119.99615 * 359.97438 * 12 10 9
15 15 H 1.48507 * 109.47035 * 89.99952 * 14 12 10
16 16 H 1.48495 * 109.47177 * 210.00044 * 14 12 10
17 17 H 1.48499 * 109.47421 * 330.00093 * 14 12 10
18 18 C 1.54599 * 105.14112 * 239.22197 * 4 2 1
19 19 C 1.54933 * 102.92019 * 338.04386 * 18 4 2
20 20 N 1.48068 * 110.16138 * 121.05927 * 2 1 3
21 21 C 1.46902 * 111.15896 * 265.17196 * 20 2 1
22 22 H 1.09000 * 109.46636 * 175.08029 * 1 2 3
23 23 H 1.08996 * 109.46731 * 295.07514 * 1 2 3
24 24 H 1.08991 * 109.47196 * 55.07849 * 1 2 3
25 25 H 1.00894 * 110.99965 * 43.76326 * 6 4 2
26 26 H 1.09001 * 109.47297 * 299.99776 * 7 6 4
27 27 H 1.08999 * 109.46877 * 60.00223 * 7 6 4
28 28 H 1.09001 * 109.47219 * 299.99931 * 8 7 6
29 29 H 1.08998 * 109.47075 * 59.99797 * 8 7 6
30 30 H 1.09001 * 109.47635 * 300.00080 * 9 8 7
31 31 H 1.09010 * 109.47033 * 59.99813 * 9 8 7
32 32 H 0.97000 * 119.99905 * 179.97438 * 13 12 10
33 33 H 1.08999 * 110.72287 * 219.68245 * 18 4 2
34 34 H 1.09000 * 110.71958 * 96.40271 * 18 4 2
35 35 H 1.09004 * 110.66957 * 155.85077 * 19 18 4
36 36 H 1.09009 * 110.66901 * 278.81442 * 19 18 4
37 37 H 1.09000 * 109.47617 * 302.47864 * 21 20 2
38 38 H 1.09002 * 109.46828 * 62.47957 * 21 20 2
39 39 H 1.08997 * 109.46780 * 182.47572 * 21 20 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9011 1.0249 0.0000
4 6 2.0547 -0.7479 -1.2396
5 1 2.6686 -0.0851 -1.8496
6 7 0.9351 -1.2761 -2.0306
7 6 1.3920 -1.7325 -3.3501
8 6 0.2008 -2.2751 -4.1426
9 6 0.6767 -2.7510 -5.5166
10 6 -0.4962 -3.2860 -6.2969
11 1 -1.4825 -3.2869 -5.8566
12 6 -0.3103 -3.7753 -7.5724
13 7 -1.3339 -4.2426 -8.2532
14 14 1.3956 -3.7744 -8.3336
15 1 2.0821 -5.0511 -8.0113
16 1 1.2800 -3.6328 -9.8073
17 1 2.1808 -2.6385 -7.7874
18 6 2.9102 -1.9074 -0.6796
19 6 3.2734 -1.4141 0.7434
20 7 2.0404 -0.7171 1.1907
21 6 2.3314 0.2160 2.2873
22 1 -0.3632 -1.0239 -0.0881
23 1 -0.3633 0.4355 0.9308
24 1 -0.3633 0.5882 -0.8425
25 1 0.2001 -0.5906 -2.1196
26 1 1.8373 -0.8965 -3.8896
27 1 2.1341 -2.5209 -3.2249
28 1 -0.2441 -3.1111 -3.6029
29 1 -0.5417 -1.4870 -4.2676
30 1 1.1219 -1.9153 -6.0565
31 1 1.4191 -3.5392 -5.3910
32 1 -1.2031 -4.5865 -9.1507
33 1 3.8089 -2.0486 -1.2801
34 1 2.3283 -2.8279 -0.6320
35 1 3.4976 -2.2569 1.3973
36 1 4.1149 -0.7221 0.7076
37 1 3.0526 0.9602 1.9496
38 1 1.4117 0.7143 2.5940
39 1 2.7456 -0.3342 3.1322
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000719577969.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:35:34
Heat of formation + Delta-G solvation = -23.254191 kcal
Electronic energy + Delta-G solvation = -15826.304329 eV
Core-core repulsion = 13381.445407 eV
Total energy + Delta-G solvation = -2444.858922 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-40.48640 -37.27084 -35.35816 -33.63340 -32.38181 -31.23449 -28.19970 -26.11906
-25.77484 -23.98108 -22.08497 -21.71546 -20.29029 -18.90519 -17.24169 -16.86639
-16.48831 -16.21271 -15.82606 -15.25991 -15.11715 -14.74212 -14.26784 -13.88458
-13.59357 -13.39356 -13.22622 -13.04797 -12.66797 -12.60068 -12.23421 -12.21080
-12.06918 -11.90281 -11.78961 -11.68052 -11.44610 -11.38289 -11.20105 -10.75905
-9.44554 -9.25421 -8.28861 -6.33218 1.36267 1.38172 1.50340 2.36903
3.02128 3.06313 3.20305 3.56423 3.81583 4.16016 4.22541 4.29534
4.33574 4.38732 4.51446 4.51741 4.62779 4.67514 4.73425 4.84598
4.87337 4.92211 5.00099 5.01189 5.02133 5.10106 5.15848 5.27323
5.50137 5.53253 5.62398 5.67167 5.94345 6.10828 6.19547 6.31028
6.50851 6.75217 7.31391 8.88251
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.056356 B = 0.004565 C = 0.004343
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 496.725973 B = 6132.616986 C = 6445.951286
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C 0.068 3.932
3 H 0.057 0.943
4 C 0.076 3.924
5 H 0.046 0.954
6 N -0.682 5.682
7 C 0.070 3.930
8 C -0.090 4.090
9 C -0.010 4.010
10 C -0.534 4.534
11 H 0.029 0.971
12 C 0.001 3.999
13 N -0.953 5.953
14 Si 0.955 3.045
15 H -0.266 1.266
16 H -0.283 1.283
17 H -0.246 1.246
18 C -0.115 4.115
19 C 0.040 3.960
20 N -0.531 5.531
21 C 0.017 3.983
22 H 0.061 0.939
23 H 0.057 0.943
24 H 0.061 0.939
25 H 0.346 0.654
26 H 0.029 0.971
27 H 0.068 0.932
28 H 0.048 0.952
29 H 0.046 0.954
30 H 0.020 0.980
31 H 0.018 0.982
32 H 0.266 0.734
33 H 0.074 0.926
34 H 0.069 0.931
35 H 0.088 0.912
36 H 0.053 0.947
37 H 0.031 0.969
38 H 0.071 0.929
39 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.821 10.612 19.251 24.959
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C -0.041 4.041
3 H 0.075 0.925
4 C -0.034 4.034
5 H 0.064 0.936
6 N -0.316 5.316
7 C -0.059 4.059
8 C -0.128 4.128
9 C -0.048 4.048
10 C -0.572 4.572
11 H 0.047 0.953
12 C -0.196 4.196
13 N -0.594 5.594
14 Si 0.778 3.222
15 H -0.191 1.191
16 H -0.209 1.209
17 H -0.169 1.169
18 C -0.154 4.154
19 C -0.088 4.088
20 N -0.256 5.256
21 C -0.131 4.131
22 H 0.080 0.920
23 H 0.076 0.924
24 H 0.080 0.920
25 H 0.167 0.833
26 H 0.047 0.953
27 H 0.086 0.914
28 H 0.066 0.934
29 H 0.065 0.935
30 H 0.038 0.962
31 H 0.037 0.963
32 H 0.075 0.925
33 H 0.093 0.907
34 H 0.088 0.912
35 H 0.106 0.894
36 H 0.071 0.929
37 H 0.050 0.950
38 H 0.090 0.910
39 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges 11.409 9.575 19.595 24.613
hybrid contribution 0.805 1.090 -1.471 2.000
sum 12.215 10.665 18.124 24.319
Atomic orbital electron populations
1.21606 0.93482 1.02592 1.01174 1.22473 0.97102 0.95330 0.89187
0.92468 1.22400 0.91933 0.95315 0.93785 0.93634 1.60759 1.11201
1.43971 1.15663 1.21896 0.97009 0.98732 0.88290 1.21255 0.97082
0.99634 0.94836 1.19486 0.95345 0.95928 0.93998 1.21528 0.95176
1.40457 1.00042 0.95269 1.26081 1.01618 0.94206 0.97657 1.70081
1.33208 1.43596 1.12542 0.85590 0.79402 0.80015 0.77205 1.19094
1.20922 1.16918 1.22553 0.98928 0.98442 0.95464 1.23197 0.91185
0.98700 0.95721 1.64672 1.26933 1.27085 1.06896 1.22549 1.01016
0.95062 0.94508 0.92006 0.92361 0.92013 0.83297 0.95287 0.91361
0.93360 0.93500 0.96208 0.96335 0.92497 0.90696 0.91213 0.89378
0.92886 0.95010 0.91048 0.90459
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.65 8.28 71.98 0.60 -2.06 16
2 C 0.07 1.36 3.09 45.03 0.14 1.50 16
3 H 0.06 1.04 7.70 -2.39 -0.02 1.03 16
4 C 0.08 1.73 3.27 45.79 0.15 1.88 16
5 H 0.05 1.01 8.02 -2.38 -0.02 1.00 16
6 N -0.68 -18.46 5.23 -487.00 -2.55 -21.00 16
7 C 0.07 2.19 5.52 86.30 0.48 2.66 16
8 C -0.09 -3.60 5.41 30.60 0.17 -3.43 16
9 C -0.01 -0.46 4.04 29.84 0.12 -0.34 16
10 C -0.53 -31.74 9.66 25.60 0.25 -31.49 16
11 H 0.03 1.91 7.99 -2.91 -0.02 1.89 16
12 C 0.00 0.04 5.47 84.65 0.46 0.51 16
13 N -0.95 -61.10 13.96 21.45 0.30 -60.80 16
14 Si 0.95 44.89 27.47 68.60 1.88 46.77 16
15 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16
16 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16
17 H -0.25 -10.65 6.54 99.48 0.65 -10.00 16
18 C -0.12 -2.50 6.19 31.80 0.20 -2.30 16
19 C 0.04 0.72 6.55 86.65 0.57 1.29 16
20 N -0.53 -10.49 5.20 -883.64 -4.59 -15.09 16
21 C 0.02 0.25 9.42 127.69 1.20 1.45 16
22 H 0.06 1.53 7.47 -2.39 -0.02 1.51 16
23 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16
24 H 0.06 1.15 7.10 -2.39 -0.02 1.13 16
25 H 0.35 8.86 6.31 -89.70 -0.57 8.29 16
26 H 0.03 0.87 8.11 -2.39 -0.02 0.85 16
27 H 0.07 2.13 7.72 -2.39 -0.02 2.11 16
28 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16
29 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16
30 H 0.02 0.91 7.20 -2.39 -0.02 0.90 16
31 H 0.02 0.85 7.57 -2.38 -0.02 0.83 16
32 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16
33 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16
34 H 0.07 1.80 8.06 -2.39 -0.02 1.78 16
35 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16
36 H 0.05 0.83 7.99 -2.38 -0.02 0.81 16
37 H 0.03 0.42 8.00 -2.39 -0.02 0.41 16
38 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16
39 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16
Total: -1.00 -66.36 304.06 -0.27 -66.63
By element:
Atomic # 1 Polarization: 13.46 SS G_CDS: 0.37 Total: 13.83 kcal
Atomic # 6 Polarization: -34.66 SS G_CDS: 4.32 Total: -30.33 kcal
Atomic # 7 Polarization: -90.05 SS G_CDS: -6.84 Total: -96.89 kcal
Atomic # 14 Polarization: 44.89 SS G_CDS: 1.88 Total: 46.77 kcal
Total: -66.36 -0.27 -66.63 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000719577969.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 43.372 kcal
(2) G-P(sol) polarization free energy of solvation -66.359 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.987 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.267 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.626 kcal
(6) G-S(sol) free energy of system = (1) + (5) -23.254 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds