Wall clock time and date at job start Mon Mar 30 2020 03:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 110.06668 * 2 1 4 4 C 1.53997 * 109.91434 * 121.20123 * 2 1 3 5 5 H 1.08997 * 110.39279 * 239.53959 * 4 2 1 6 6 N 1.46905 * 110.31035 * 1.66399 * 4 2 1 7 7 C 1.46892 * 110.99935 * 202.17059 * 6 4 2 8 8 C 1.53006 * 109.47135 * 180.02562 * 7 6 4 9 9 C 1.53002 * 109.47348 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.46919 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00202 * 359.97438 * 10 9 8 12 12 C 1.37884 * 119.99746 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99573 * 0.27650 * 12 10 9 14 14 Si 1.86800 * 119.99781 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46758 * 89.99934 * 14 12 10 16 16 H 1.48499 * 109.47026 * 209.99782 * 14 12 10 17 17 H 1.48496 * 109.47474 * 329.99818 * 14 12 10 18 18 C 1.54598 * 105.13922 * 120.57888 * 4 2 1 19 19 C 1.54934 * 102.92025 * 21.95828 * 18 4 2 20 20 N 1.47899 * 109.92118 * 238.78967 * 2 1 3 21 21 C 1.46904 * 110.99520 * 94.80246 * 20 2 1 22 22 H 1.08992 * 109.47413 * 298.79739 * 1 2 3 23 23 H 1.09003 * 109.46646 * 58.79989 * 1 2 3 24 24 H 1.08999 * 109.46919 * 178.79467 * 1 2 3 25 25 H 1.00896 * 110.99866 * 78.21147 * 6 4 2 26 26 H 1.09001 * 109.47511 * 60.00413 * 7 6 4 27 27 H 1.09000 * 109.47198 * 299.99775 * 7 6 4 28 28 H 1.09004 * 109.47107 * 59.99836 * 8 7 6 29 29 H 1.09000 * 109.46866 * 299.99945 * 8 7 6 30 30 H 1.09000 * 109.46497 * 60.00162 * 9 8 7 31 31 H 1.08999 * 109.46623 * 300.00226 * 9 8 7 32 32 H 0.97001 * 120.00651 * 359.71956 * 13 12 10 33 33 H 1.08996 * 110.72210 * 140.31612 * 18 4 2 34 34 H 1.08993 * 110.72267 * 263.42216 * 18 4 2 35 35 H 1.09004 * 110.66777 * 81.01944 * 19 18 4 36 36 H 1.09001 * 110.66571 * 204.15072 * 19 18 4 37 37 H 1.09001 * 109.46690 * 177.27185 * 21 20 2 38 38 H 1.08995 * 109.47523 * 297.27332 * 21 20 2 39 39 H 1.08999 * 109.47099 * 57.27817 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9041 1.0238 0.0000 4 6 2.0546 -0.7501 1.2385 5 1 2.6709 -0.0904 1.8492 6 7 0.9335 -1.2757 2.0290 7 6 1.3376 -1.5156 3.4207 8 6 0.1466 -2.0619 4.2107 9 6 0.5676 -2.3124 5.6602 10 6 -0.6057 -2.8498 6.4383 11 1 -1.5567 -2.9975 5.9482 12 6 -0.4654 -3.1520 7.7763 13 7 0.6910 -2.9660 8.3746 14 14 -1.9199 -3.8175 8.7410 15 1 -1.9294 -5.3004 8.6621 16 1 -1.8058 -3.3981 10.1609 17 1 -3.1809 -3.2832 8.1669 18 6 2.9059 -1.9117 0.6764 19 6 3.2682 -1.4185 -0.7470 20 7 2.0340 -0.7205 -1.1892 21 6 2.3213 0.2122 -2.2872 22 1 -0.3634 0.4950 0.9005 23 1 -0.3633 0.5324 -0.8791 24 1 -0.3633 -1.0274 -0.0216 25 1 0.5585 -2.1142 1.6116 26 1 1.6725 -0.5798 3.8684 27 1 2.1512 -2.2407 3.4430 28 1 -0.1879 -2.9977 3.7630 29 1 -0.6673 -1.3371 4.1885 30 1 0.9023 -1.3767 6.1081 31 1 1.3813 -3.0373 5.6820 32 1 1.4462 -2.6202 7.8737 33 1 3.8052 -2.0557 1.2752 34 1 2.3224 -2.8312 0.6321 35 1 4.1098 -0.7267 -0.7118 36 1 3.4889 -2.2617 -1.4016 37 1 2.7358 -0.3378 -3.1321 38 1 1.4002 0.7081 -2.5932 39 1 3.0413 0.9584 -1.9511 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719577973.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:38 Heat of formation + Delta-G solvation = -32.726716 kcal Electronic energy + Delta-G solvation = -15801.766293 eV Core-core repulsion = 13356.496611 eV Total energy + Delta-G solvation = -2445.269682 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.55134 -37.38832 -35.68357 -33.42065 -32.26939 -30.94781 -27.66356 -25.99023 -25.79370 -24.30815 -22.31595 -22.17577 -20.45113 -18.92156 -17.39719 -16.67735 -16.27965 -15.79835 -15.65249 -15.38701 -15.20779 -14.69829 -14.35324 -13.93851 -13.65786 -13.45936 -13.24334 -13.05268 -12.61855 -12.58364 -12.35172 -12.31440 -12.01165 -11.95865 -11.80072 -11.73621 -11.62638 -11.50919 -10.65509 -10.54724 -9.42830 -9.34230 -8.69877 -6.39990 1.52365 1.61992 1.80088 2.56608 2.98874 3.14254 3.15242 3.62961 3.70810 4.03472 4.18994 4.21336 4.26990 4.34086 4.50027 4.52212 4.58621 4.59472 4.72764 4.76868 4.84151 4.90205 4.93949 4.98716 5.03791 5.05933 5.10621 5.16717 5.43045 5.53561 5.58094 5.90791 5.97286 6.06406 6.14068 6.18642 6.42141 6.58124 7.42119 8.71150 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.064423 B = 0.004214 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.524410 B = 6643.105196 C = 6876.249124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.072 3.928 3 H 0.054 0.946 4 C 0.078 3.922 5 H 0.077 0.923 6 N -0.673 5.673 7 C 0.074 3.926 8 C -0.086 4.086 9 C 0.009 3.991 10 C -0.620 4.620 11 H 0.050 0.950 12 C -0.041 4.041 13 N -0.939 5.939 14 Si 1.121 2.879 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.269 1.269 18 C -0.152 4.152 19 C 0.041 3.959 20 N -0.532 5.532 21 C 0.017 3.983 22 H 0.056 0.944 23 H 0.047 0.953 24 H 0.051 0.949 25 H 0.345 0.655 26 H 0.060 0.940 27 H 0.023 0.977 28 H 0.049 0.951 29 H 0.052 0.948 30 H -0.012 1.012 31 H -0.012 1.012 32 H 0.255 0.745 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.021 5.179 -20.374 21.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.037 4.037 3 H 0.072 0.928 4 C -0.033 4.033 5 H 0.096 0.904 6 N -0.303 5.303 7 C -0.055 4.055 8 C -0.124 4.124 9 C -0.029 4.029 10 C -0.657 4.657 11 H 0.068 0.932 12 C -0.238 4.238 13 N -0.577 5.577 14 Si 0.942 3.058 15 H -0.197 1.197 16 H -0.207 1.207 17 H -0.194 1.194 18 C -0.191 4.191 19 C -0.087 4.087 20 N -0.256 5.256 21 C -0.131 4.131 22 H 0.075 0.925 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.164 0.836 26 H 0.079 0.921 27 H 0.041 0.959 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.006 0.994 31 H 0.006 0.994 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 2.891 4.946 -18.971 19.817 hybrid contribution 1.973 0.372 -1.090 2.284 sum 4.864 5.318 -20.061 21.316 Atomic orbital electron populations 1.21336 0.93083 1.01699 1.00344 1.22402 0.97340 0.95342 0.88632 0.92790 1.22470 0.90725 0.96095 0.94034 0.90431 1.60611 1.31853 1.36507 1.01371 1.21825 0.95979 0.98989 0.88720 1.21250 0.97381 0.99502 0.94227 1.19149 0.95682 0.94180 0.93866 1.22545 0.98406 1.46918 0.97870 0.93174 1.27505 1.03782 0.95135 0.97407 1.70890 1.02477 1.44479 1.39814 0.82887 0.71633 0.76701 0.74558 1.19652 1.20733 1.19376 1.23211 1.00610 0.98606 0.96697 1.23154 0.91392 0.98753 0.95385 1.64732 1.26804 1.27166 1.06946 1.22541 1.01063 0.95073 0.94466 0.92477 0.93390 0.93015 0.83557 0.92132 0.95903 0.93255 0.92946 0.99361 0.99397 0.93568 0.90780 0.91172 0.92967 0.89207 0.90360 0.91042 0.95113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.43 8.53 71.98 0.61 -1.81 16 2 C 0.07 1.55 3.09 45.06 0.14 1.69 16 3 H 0.05 1.13 7.69 -2.39 -0.02 1.11 16 4 C 0.08 1.85 3.27 45.80 0.15 2.00 16 5 H 0.08 1.91 7.86 -2.39 -0.02 1.89 16 6 N -0.67 -18.93 4.52 -487.03 -2.20 -21.13 16 7 C 0.07 2.53 5.52 86.31 0.48 3.01 16 8 C -0.09 -3.62 5.41 30.60 0.17 -3.45 16 9 C 0.01 0.47 4.28 29.85 0.13 0.60 16 10 C -0.62 -36.54 9.11 25.60 0.23 -36.31 16 11 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 12 C -0.04 -2.46 5.46 84.66 0.46 -2.00 16 13 N -0.94 -59.56 13.65 21.45 0.29 -59.27 16 14 Si 1.12 51.30 29.90 68.60 2.05 53.35 16 15 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 16 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 17 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 18 C -0.15 -3.18 6.65 31.80 0.21 -2.97 16 19 C 0.04 0.74 6.56 86.65 0.57 1.30 16 20 N -0.53 -10.50 5.18 -884.06 -4.58 -15.09 16 21 C 0.02 0.26 9.41 127.69 1.20 1.46 16 22 H 0.06 1.43 7.85 -2.39 -0.02 1.41 16 23 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.05 1.26 7.41 -2.39 -0.02 1.24 16 25 H 0.35 9.49 7.63 -89.70 -0.68 8.81 16 26 H 0.06 2.13 8.07 -2.39 -0.02 2.11 16 27 H 0.02 0.78 8.11 -2.39 -0.02 0.76 16 28 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 29 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 30 H -0.01 -0.68 8.00 -2.39 -0.02 -0.70 16 31 H -0.01 -0.69 8.01 -2.39 -0.02 -0.71 16 32 H 0.25 16.35 7.22 -92.71 -0.67 15.68 16 33 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.07 1.57 7.61 -2.39 -0.02 1.56 16 35 H 0.05 0.85 8.00 -2.38 -0.02 0.83 16 36 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.03 0.44 7.99 -2.39 -0.02 0.42 16 Total: -1.00 -65.02 308.08 0.31 -64.71 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.40 Total: 13.91 kcal Atomic # 6 Polarization: -40.82 SS G_CDS: 4.35 Total: -36.47 kcal Atomic # 7 Polarization: -89.00 SS G_CDS: -6.49 Total: -95.49 kcal Atomic # 14 Polarization: 51.30 SS G_CDS: 2.05 Total: 53.35 kcal Total: -65.02 0.31 -64.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719577973.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.982 kcal (2) G-P(sol) polarization free energy of solvation -65.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds