Wall clock time and date at job start Mon Mar 30 2020 03:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 110.28898 * 2 1 4 4 C 1.54384 * 110.32056 * 122.23382 * 2 1 3 5 5 N 1.48558 * 104.59157 * 142.75089 * 4 2 1 6 6 C 1.46898 * 110.99975 * 200.96086 * 5 4 2 7 7 C 1.53006 * 109.47006 * 285.41569 * 6 5 4 8 8 C 1.50698 * 109.47184 * 179.97438 * 7 6 5 9 9 H 1.08005 * 119.99819 * 0.02562 * 8 7 6 10 10 C 1.37875 * 120.00046 * 179.97438 * 8 7 6 11 11 N 1.31511 * 120.00192 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99979 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47297 * 180.02562 * 12 10 8 14 14 H 1.48503 * 109.47261 * 60.00310 * 12 10 8 15 15 H 1.48500 * 109.47454 * 300.00304 * 12 10 8 16 16 C 1.48559 * 104.22264 * 320.51500 * 5 4 2 17 17 C 1.54257 * 110.32666 * 237.87216 * 2 1 3 18 18 H 1.09002 * 110.41335 * 122.16210 * 17 2 1 19 19 C 1.53003 * 110.32121 * 0.02562 * 17 2 1 20 20 C 1.53000 * 109.47308 * 177.91035 * 19 17 2 21 21 N 1.46894 * 109.47391 * 180.02562 * 20 19 17 22 22 H 1.08992 * 109.46978 * 182.12741 * 1 2 3 23 23 H 1.08996 * 109.46832 * 302.13028 * 1 2 3 24 24 H 1.09003 * 109.46503 * 62.12788 * 1 2 3 25 25 H 1.08995 * 110.41133 * 23.97370 * 4 2 1 26 26 H 1.08998 * 110.41167 * 261.52624 * 4 2 1 27 27 H 1.09001 * 109.47062 * 165.41823 * 6 5 4 28 28 H 1.09001 * 109.47392 * 45.41270 * 6 5 4 29 29 H 1.09001 * 109.47002 * 60.00218 * 7 6 5 30 30 H 1.08993 * 109.46955 * 299.99780 * 7 6 5 31 31 H 0.97001 * 119.99934 * 359.97438 * 11 10 8 32 32 H 1.08998 * 110.41185 * 158.26404 * 16 5 4 33 33 H 1.09002 * 110.41416 * 280.70588 * 16 5 4 34 34 H 1.09003 * 109.47540 * 297.91053 * 19 17 2 35 35 H 1.09005 * 109.47320 * 57.90964 * 19 17 2 36 36 H 1.09003 * 109.46835 * 300.00450 * 20 19 17 37 37 H 1.09005 * 109.46988 * 59.99725 * 20 19 17 38 38 H 1.00898 * 111.00320 * 56.04848 * 21 20 19 39 39 H 1.00902 * 110.99766 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0662 -0.7722 1.2246 5 7 3.2693 -1.4835 0.7212 6 6 3.6068 -2.6232 1.5844 7 6 4.2358 -2.1115 2.8819 8 6 4.5814 -3.2806 3.7678 9 1 4.3736 -4.2879 3.4382 10 6 5.1639 -3.0644 4.9986 11 7 5.4174 -1.8379 5.3998 12 14 5.5929 -4.5136 6.0964 13 1 6.2034 -4.0170 7.3558 14 1 6.5567 -5.3984 5.3940 15 1 4.3593 -5.2775 6.4125 16 6 2.8807 -1.9416 -0.6375 17 6 2.0659 -0.7693 -1.2250 18 1 2.7079 -0.1260 -1.8269 19 6 0.9050 -1.2988 -2.0694 20 6 1.4571 -2.0126 -3.3049 21 7 0.3426 -2.5204 -4.1160 22 1 -0.3633 -1.0269 0.0381 23 1 -0.3633 0.5465 0.8702 24 1 -0.3632 0.4805 -0.9085 25 1 1.3229 -1.4863 1.5790 26 1 2.3394 -0.0798 2.0209 27 1 4.3145 -3.2724 1.0689 28 1 2.7013 -3.1841 1.8162 29 1 3.5281 -1.4622 3.3975 30 1 5.1412 -1.5507 2.6502 31 1 5.1950 -1.0853 4.8297 32 1 3.7671 -2.1297 -1.2433 33 1 2.2648 -2.8387 -0.5746 34 1 0.3156 -1.9995 -1.4781 35 1 0.2740 -0.4667 -2.3821 36 1 2.0466 -1.3118 -3.8963 37 1 2.0881 -2.8446 -2.9922 38 1 -0.2922 -1.7765 -4.3644 39 1 0.6815 -2.9960 -4.9388 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723909624.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:02 Heat of formation + Delta-G solvation = -45.607188 kcal Electronic energy + Delta-G solvation = -16028.388294 eV Core-core repulsion = 13582.560073 eV Total energy + Delta-G solvation = -2445.828221 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.68086 -37.01987 -35.73977 -34.40409 -31.69513 -31.10684 -27.55667 -27.13910 -25.48074 -23.65353 -22.71114 -21.77876 -19.91689 -18.90513 -17.48037 -16.82102 -16.18312 -15.88441 -15.67341 -15.62582 -15.33299 -14.72205 -14.50636 -14.24255 -13.80160 -13.48921 -13.25444 -13.15045 -12.71236 -12.66104 -12.29490 -12.17306 -11.98670 -11.85335 -11.70785 -11.47690 -11.45270 -11.15062 -10.73902 -10.56364 -9.60186 -9.47076 -8.72765 -6.43089 1.51230 1.60476 1.80068 2.54952 3.05957 3.13566 3.50402 3.57692 3.68694 4.03370 4.18704 4.19806 4.27652 4.32592 4.43072 4.46220 4.59443 4.60502 4.67091 4.72511 4.75922 4.84549 4.96390 5.00902 5.01876 5.19368 5.23241 5.28159 5.32131 5.35097 5.50856 5.83256 5.97395 6.11234 6.16009 6.24431 6.53322 6.61654 7.40237 8.68297 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.043693 B = 0.005041 C = 0.004736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.675479 B = 5552.634255 C = 5910.591037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.086 4.086 3 H 0.081 0.919 4 C 0.037 3.963 5 N -0.530 5.530 6 C 0.076 3.924 7 C 0.024 3.976 8 C -0.623 4.623 9 H 0.051 0.949 10 C -0.038 4.038 11 N -0.935 5.935 12 Si 1.121 2.879 13 H -0.281 1.281 14 H -0.267 1.267 15 H -0.268 1.268 16 C 0.036 3.964 17 C -0.077 4.077 18 H 0.086 0.914 19 C -0.100 4.100 20 C 0.060 3.940 21 N -0.861 5.861 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.081 0.919 25 H 0.033 0.967 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.020 0.980 29 H -0.014 1.014 30 H -0.012 1.012 31 H 0.254 0.746 32 H 0.078 0.922 33 H 0.038 0.962 34 H 0.059 0.941 35 H 0.083 0.917 36 H 0.035 0.965 37 H 0.060 0.940 38 H 0.347 0.653 39 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.803 1.983 -17.899 21.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.105 4.105 3 H 0.100 0.900 4 C -0.091 4.091 5 N -0.253 5.253 6 C -0.052 4.052 7 C -0.013 4.013 8 C -0.662 4.662 9 H 0.069 0.931 10 C -0.235 4.235 11 N -0.572 5.572 12 Si 0.941 3.059 13 H -0.207 1.207 14 H -0.192 1.192 15 H -0.193 1.193 16 C -0.092 4.092 17 C -0.096 4.096 18 H 0.105 0.895 19 C -0.138 4.138 20 C -0.071 4.071 21 N -0.392 5.392 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.100 0.900 25 H 0.051 0.949 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.039 0.961 29 H 0.004 0.996 30 H 0.006 0.994 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.101 0.899 36 H 0.053 0.947 37 H 0.078 0.922 38 H 0.160 0.840 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.847 1.468 -15.828 18.699 hybrid contribution -0.658 0.646 -1.793 2.016 sum -10.505 2.114 -17.621 20.624 Atomic orbital electron populations 1.21903 0.93108 1.01945 1.02652 1.21898 0.96759 0.99177 0.92671 0.90020 1.23182 0.90657 0.97111 0.98157 1.65356 1.33583 1.23378 1.03016 1.21970 0.97906 0.91592 0.93698 1.19011 0.93962 0.95655 0.92687 1.22452 1.44709 0.94008 1.04985 0.93090 1.27533 0.93390 1.03651 0.98937 1.70907 1.46892 0.99359 1.40082 0.82907 0.77442 0.71295 0.74259 1.20664 1.19227 1.19322 1.23249 0.98947 0.97129 0.89842 1.21866 0.96501 0.95548 0.95711 0.89541 1.21668 0.96731 1.00017 0.95373 1.21797 0.92829 0.98090 0.94405 1.58680 1.19586 1.34177 1.26773 0.92860 0.92767 0.90037 0.94859 0.92627 0.92115 0.96131 0.99603 0.99367 0.93664 0.90319 0.94325 0.92200 0.89882 0.94664 0.92188 0.83955 0.83810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 7.94 71.98 0.57 -2.20 16 2 C -0.09 -2.15 3.65 -9.90 -0.04 -2.19 16 3 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 4 C 0.04 1.29 5.46 86.45 0.47 1.76 16 5 N -0.53 -20.41 5.34 -881.49 -4.70 -25.12 16 6 C 0.08 3.50 4.77 86.31 0.41 3.91 16 7 C 0.02 1.36 4.40 29.85 0.13 1.50 16 8 C -0.62 -37.42 9.11 25.60 0.23 -37.19 16 9 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 10 C -0.04 -2.28 5.46 84.65 0.46 -1.81 16 11 N -0.94 -60.30 13.65 21.45 0.29 -60.01 16 12 Si 1.12 51.55 29.90 68.60 2.05 53.60 16 13 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 14 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 15 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 16 C 0.04 1.07 5.12 86.45 0.44 1.51 16 17 C -0.08 -1.75 3.09 -9.90 -0.03 -1.78 16 18 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 19 C -0.10 -1.82 3.67 30.60 0.11 -1.71 16 20 C 0.06 1.01 6.63 86.30 0.57 1.58 16 21 N -0.86 -12.80 9.62 -186.72 -1.80 -14.60 16 22 H 0.05 1.12 6.81 -2.39 -0.02 1.11 16 23 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.08 1.24 6.74 -2.39 -0.02 1.23 16 25 H 0.03 1.20 7.44 -2.39 -0.02 1.18 16 26 H 0.06 2.15 7.85 -2.39 -0.02 2.13 16 27 H 0.06 2.73 8.08 -2.39 -0.02 2.71 16 28 H 0.02 0.94 7.77 -2.39 -0.02 0.92 16 29 H -0.01 -0.85 7.34 -2.39 -0.02 -0.87 16 30 H -0.01 -0.73 8.01 -2.39 -0.02 -0.75 16 31 H 0.25 16.74 7.22 -92.71 -0.67 16.07 16 32 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.04 1.17 7.65 -2.39 -0.02 1.15 16 34 H 0.06 1.29 6.83 -2.39 -0.02 1.27 16 35 H 0.08 1.23 6.67 -2.38 -0.02 1.21 16 36 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.06 1.18 7.48 -2.38 -0.02 1.16 16 38 H 0.35 4.00 8.99 -89.70 -0.81 3.19 16 39 H 0.35 4.13 9.08 -89.69 -0.81 3.32 16 Total: -1.00 -69.36 301.55 -1.32 -70.68 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -0.50 Total: 12.06 kcal Atomic # 6 Polarization: -39.97 SS G_CDS: 3.34 Total: -36.62 kcal Atomic # 7 Polarization: -93.51 SS G_CDS: -6.21 Total: -99.72 kcal Atomic # 14 Polarization: 51.55 SS G_CDS: 2.05 Total: 53.60 kcal Total: -69.36 -1.32 -70.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723909624.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.074 kcal (2) G-P(sol) polarization free energy of solvation -69.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds