Wall clock time and date at job start Mon Mar 30 2020 03:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46893 * 111.00166 * 2 1 4 4 C 1.53000 * 109.47413 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.50328 * 305.07765 * 4 3 2 6 6 C 1.53117 * 109.53385 * 65.17289 * 4 3 2 7 7 C 1.53124 * 109.16058 * 177.61644 * 6 4 3 8 8 C 1.53031 * 109.27892 * 302.34648 * 7 6 4 9 9 N 1.46845 * 109.52408 * 59.18171 * 8 7 6 10 10 C 1.46900 * 111.00414 * 174.15964 * 9 8 7 11 11 H 1.09001 * 109.47229 * 64.20901 * 10 9 8 12 12 C 1.53000 * 109.47161 * 184.20713 * 10 9 8 13 13 C 1.50695 * 109.46999 * 304.20702 * 10 9 8 14 14 H 1.08005 * 120.00046 * 324.82382 * 13 10 9 15 15 C 1.37876 * 119.99856 * 144.82071 * 13 10 9 16 16 N 1.31520 * 120.00070 * 184.55841 * 15 13 10 17 17 Si 1.86795 * 120.00206 * 4.56240 * 15 13 10 18 18 H 1.48500 * 109.47312 * 273.00731 * 17 15 13 19 19 H 1.48499 * 109.47302 * 33.01258 * 17 15 13 20 20 H 1.48502 * 109.47236 * 153.00733 * 17 15 13 21 21 C 1.46853 * 111.19645 * 298.25437 * 9 8 7 22 22 H 1.08998 * 109.47028 * 59.99688 * 1 2 3 23 23 H 1.08999 * 109.47577 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46890 * 300.00368 * 1 2 3 25 25 H 1.00899 * 110.99826 * 236.04455 * 2 1 3 26 26 H 1.09000 * 109.47452 * 59.99611 * 3 2 1 27 27 H 1.09001 * 109.46919 * 299.99846 * 3 2 1 28 28 H 1.09001 * 109.52724 * 297.51893 * 6 4 3 29 29 H 1.09005 * 109.52381 * 57.71380 * 6 4 3 30 30 H 1.08997 * 109.49989 * 62.28906 * 7 6 4 31 31 H 1.09004 * 109.50163 * 182.36236 * 7 6 4 32 32 H 1.08994 * 109.46615 * 299.16299 * 8 7 6 33 33 H 1.09002 * 109.46109 * 179.19129 * 8 7 6 34 34 H 1.09004 * 109.46849 * 292.56660 * 12 10 9 35 35 H 1.08995 * 109.47247 * 52.56872 * 12 10 9 36 36 H 1.09005 * 109.46630 * 172.57103 * 12 10 9 37 37 H 0.97005 * 120.00094 * 179.97438 * 16 15 13 38 38 H 1.08998 * 109.46613 * 181.75450 * 21 9 8 39 39 H 1.08998 * 109.46324 * 301.73702 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 3.5249 1.3306 0.0006 5 1 3.8726 0.7307 0.8418 6 6 4.0211 0.7110 -1.3087 7 6 5.5521 0.7288 -1.3247 8 6 6.0424 2.1691 -1.1606 9 7 5.5419 2.7166 0.1067 10 6 6.1055 4.0486 0.3640 11 1 5.7630 4.7425 -0.4037 12 6 5.6453 4.5403 1.7378 13 6 7.6102 3.9713 0.3363 14 1 8.1126 3.0904 0.7080 15 6 8.3455 5.0250 -0.1638 16 7 9.6522 4.9226 -0.2713 17 14 7.4857 6.5982 -0.6884 18 1 7.0465 6.4747 -2.1015 19 1 6.3028 6.8288 0.1793 20 1 8.4242 7.7418 -0.5599 21 6 4.0740 2.7535 0.1263 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8306 -0.5261 -0.7814 26 1 1.6460 1.8948 0.8899 27 1 1.6460 1.8947 -0.8900 28 1 3.6681 -0.3176 -1.3818 29 1 3.6413 1.2883 -2.1518 30 1 5.9317 0.1195 -0.5044 31 1 5.9109 0.3273 -2.2725 32 1 5.6740 2.7748 -1.9885 33 1 7.1323 2.1836 -1.1571 34 1 4.5708 4.7224 1.7174 35 1 5.8714 3.7837 2.4891 36 1 6.1659 5.4654 1.9856 37 1 10.1695 5.6638 -0.6235 38 1 3.7342 3.1923 1.0644 39 1 3.7147 3.3563 -0.7078 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040601607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:54 Heat of formation + Delta-G solvation = -8.867206 kcal Electronic energy + Delta-G solvation = -16539.759987 eV Core-core repulsion = 14095.524932 eV Total energy + Delta-G solvation = -2444.235056 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.86077 -36.25578 -33.98133 -31.96534 -31.04893 -29.11451 -26.55007 -25.07261 -24.04885 -22.76090 -21.19778 -19.54592 -19.08321 -16.89776 -16.09753 -15.51164 -14.64226 -14.33754 -14.04834 -13.94120 -13.65475 -13.04070 -12.91149 -12.70024 -12.44189 -12.26871 -12.05978 -11.63706 -11.27422 -11.07099 -10.87837 -10.64115 -10.53546 -10.42784 -10.14613 -9.87565 -9.71760 -9.54786 -9.03759 -8.54314 -8.52776 -7.24422 -6.08371 -4.05860 3.25400 3.34867 3.37736 4.15890 4.40216 4.79044 4.99242 5.14043 5.23201 5.28354 5.29478 5.36785 5.60176 5.67605 5.71509 5.85087 5.88536 5.96526 6.04751 6.22608 6.25079 6.30914 6.36023 6.54127 6.58288 6.65038 6.70766 6.81701 6.90704 6.96331 7.09814 7.27214 7.35944 7.64783 8.08672 8.20524 8.69071 9.02840 9.56054 11.04629 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.042655 B = 0.006748 C = 0.006293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.271967 B = 4148.541014 C = 4448.147261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.694 5.694 3 C 0.064 3.936 4 C -0.082 4.082 5 H 0.086 0.914 6 C -0.114 4.114 7 C -0.115 4.115 8 C 0.065 3.935 9 N -0.525 5.525 10 C 0.180 3.820 11 H -0.003 1.003 12 C -0.134 4.134 13 C -0.500 4.500 14 H 0.081 0.919 15 C 0.072 3.928 16 N -0.898 5.898 17 Si 0.870 3.130 18 H -0.280 1.280 19 H -0.265 1.265 20 H -0.288 1.288 21 C 0.057 3.943 22 H 0.018 0.982 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.341 0.659 26 H 0.071 0.929 27 H 0.026 0.974 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.014 0.986 33 H 0.095 0.905 34 H 0.020 0.980 35 H 0.054 0.946 36 H 0.049 0.951 37 H 0.263 0.737 38 H 0.071 0.929 39 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.840 -6.786 -1.885 16.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.326 5.326 3 C -0.066 4.066 4 C -0.101 4.101 5 H 0.105 0.895 6 C -0.151 4.151 7 C -0.153 4.153 8 C -0.063 4.063 9 N -0.250 5.250 10 C 0.074 3.926 11 H 0.015 0.985 12 C -0.192 4.192 13 C -0.539 4.539 14 H 0.099 0.901 15 C -0.130 4.130 16 N -0.536 5.536 17 Si 0.698 3.302 18 H -0.206 1.206 19 H -0.189 1.189 20 H -0.214 1.214 21 C -0.072 4.072 22 H 0.037 0.963 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.159 0.841 26 H 0.089 0.911 27 H 0.044 0.956 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.032 0.968 33 H 0.114 0.886 34 H 0.039 0.961 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -14.464 -7.049 -0.876 16.114 hybrid contribution -0.882 1.835 -1.947 2.817 sum -15.346 -5.214 -2.823 16.451 Atomic orbital electron populations 1.22180 0.88286 1.01540 1.00236 1.60424 1.07247 1.14800 1.50083 1.22026 0.95441 0.88911 1.00219 1.21199 0.92440 0.97554 0.98921 0.89538 1.21632 0.96974 0.99602 0.96937 1.21602 0.94426 0.98185 1.01117 1.21923 1.02223 0.92665 0.89464 1.61993 1.03771 1.26413 1.32802 1.19657 0.95905 0.84674 0.92378 0.98530 1.22005 0.96892 1.00614 0.99702 1.20892 0.88082 1.04141 1.40738 0.90071 1.24977 0.94739 0.98216 0.95096 1.69899 1.05469 1.32080 1.46125 0.86975 0.79935 0.83967 0.79320 1.20580 1.18927 1.21409 1.22071 0.90561 0.94626 0.99984 0.96341 0.91660 0.91808 0.84113 0.91060 0.95606 0.92573 0.93154 0.91333 0.92485 0.96827 0.88640 0.96111 0.92716 0.93240 0.92661 0.91095 0.96559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.70 60.06 0.64 0.90 16 2 N -0.69 -7.89 6.85 -121.14 -0.83 -8.72 16 3 C 0.06 0.79 5.15 -3.83 -0.02 0.77 16 4 C -0.08 -1.20 2.56 -90.54 -0.23 -1.43 16 5 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 6 C -0.11 -1.58 5.00 -26.61 -0.13 -1.71 16 7 C -0.12 -1.85 6.09 -26.65 -0.16 -2.01 16 8 C 0.07 1.32 5.22 -3.84 -0.02 1.30 16 9 N -0.52 -11.04 4.52 -228.09 -1.03 -12.07 16 10 C 0.18 4.30 1.65 -68.87 -0.11 4.19 16 11 H 0.00 -0.07 5.70 -51.93 -0.30 -0.37 16 12 C -0.13 -2.91 8.48 37.16 0.31 -2.59 16 13 C -0.50 -13.83 7.34 -34.44 -0.25 -14.09 16 14 H 0.08 2.48 8.05 -52.48 -0.42 2.06 16 15 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 16 N -0.90 -27.07 13.96 55.43 0.77 -26.30 16 17 Si 0.87 21.51 26.43 -169.99 -4.49 17.02 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.26 -6.29 6.49 56.52 0.37 -5.92 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 C 0.06 1.00 4.50 -3.83 -0.02 0.98 16 22 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.34 3.56 7.14 -39.29 -0.28 3.28 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.67 6.81 -51.93 -0.35 0.32 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.10 2.20 6.74 -51.93 -0.35 1.85 16 34 H 0.02 0.39 6.69 -51.93 -0.35 0.04 16 35 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.05 1.10 7.33 -51.93 -0.38 0.72 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.07 1.22 6.17 -51.93 -0.32 0.90 16 39 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 295.26 15.07 4.45 4.45 Total: -1.00 -29.11 295.26 -8.21 -37.32 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -6.99 Total: 0.06 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: -0.09 Total: -11.76 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: -1.09 Total: -47.09 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.49 Total: 17.02 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.11 -8.21 -37.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040601607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.453 kcal (2) G-P(sol) polarization free energy of solvation -29.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds