Wall clock time and date at job start Mon Mar 30 2020 03:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29488 * 1 3 3 Si 1.86798 * 120.00127 * 2 1 4 4 H 1.48495 * 109.47559 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47224 * 300.00593 * 3 2 1 6 6 H 1.48501 * 109.46993 * 60.00524 * 3 2 1 7 7 C 1.46572 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00562 * 164.76868 * 7 2 1 9 9 C 1.40172 * 119.99812 * 344.76599 * 7 2 1 10 10 C 1.41334 * 120.31097 * 335.28544 * 9 7 2 11 11 C 1.36339 * 119.83034 * 180.02562 * 10 9 7 12 12 C 1.38925 * 120.48465 * 0.02562 * 11 10 9 13 13 C 1.38605 * 120.63494 * 0.02562 * 12 11 10 14 14 N 1.48022 * 119.91957 * 180.02562 * 13 12 11 15 15 O 1.31699 * 120.00047 * 359.97438 * 14 13 12 16 16 O 1.31703 * 119.99616 * 179.72440 * 14 13 12 17 17 C 1.37780 * 120.15671 * 0.27021 * 13 12 11 18 18 Cl 1.73597 * 120.24539 * 179.71124 * 17 13 12 19 19 H 0.96999 * 119.99469 * 359.97438 * 1 2 3 20 20 H 1.07997 * 120.08503 * 359.97438 * 10 9 7 21 21 H 1.08001 * 119.75895 * 179.97438 * 11 10 9 22 22 H 1.07994 * 119.67864 * 180.02562 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2949 0.0000 0.0000 3 14 2.2289 1.6177 0.0000 4 1 3.6889 1.3464 -0.0006 5 1 1.8701 2.3965 -1.2125 6 1 1.8702 2.3963 1.2126 7 6 2.0278 -1.2693 -0.0006 8 1 3.0793 -1.2857 -0.2463 9 6 1.3638 -2.4621 0.3179 10 6 0.1990 -2.4383 1.1180 11 6 -0.4387 -3.6044 1.4222 12 6 0.0483 -4.8175 0.9517 13 6 1.1895 -4.8637 0.1665 14 7 1.6941 -6.1649 -0.3268 15 8 1.0591 -7.2769 -0.0190 16 8 2.7752 -6.2101 -1.0775 17 6 1.8581 -3.7019 -0.1519 18 17 3.2919 -3.7578 -1.1290 19 1 -0.4849 0.8401 0.0004 20 1 -0.1844 -1.4991 1.4882 21 1 -1.3284 -3.5850 2.0341 22 1 -0.4674 -5.7332 1.2003 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034161190.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:56 Heat of formation + Delta-G solvation = 29.682218 kcal Electronic energy + Delta-G solvation = -13095.068333 eV Core-core repulsion = 10452.163031 eV Total energy + Delta-G solvation = -2642.905303 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 227.014 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.84314 -37.24596 -35.35904 -34.22938 -33.50886 -30.76597 -30.26511 -25.75852 -25.45441 -21.40151 -21.22805 -18.54775 -17.19493 -16.56981 -15.76234 -15.32213 -15.11931 -14.28453 -13.73528 -13.13817 -12.51363 -12.11203 -11.66970 -11.52175 -11.15906 -10.94909 -10.80398 -10.57398 -10.41273 -10.20203 -9.86701 -9.81315 -9.10949 -8.42401 -8.04753 -7.48441 -4.94506 0.28984 2.10108 2.14814 2.35322 2.75297 2.78217 2.82328 3.24953 3.47996 3.90810 4.84849 5.58486 5.81574 6.07750 6.13717 6.22293 6.42268 6.71661 6.82637 7.14684 7.27586 7.43418 7.72753 7.84416 8.02876 8.18548 9.39923 Molecular weight = 227.01amu Principal moments of inertia in cm(-1) A = 0.038884 B = 0.009840 C = 0.008009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.926430 B = 2844.895654 C = 3495.133456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.745 5.745 2 C 0.073 3.927 3 Si 0.927 3.073 4 H -0.250 1.250 5 H -0.266 1.266 6 H -0.264 1.264 7 C -0.424 4.424 8 H 0.102 0.898 9 C 0.104 3.896 10 C -0.123 4.123 11 C -0.095 4.095 12 C -0.193 4.193 13 C 0.051 3.949 14 N -0.007 5.007 15 O -0.225 6.225 16 O -0.173 6.173 17 C -0.115 4.115 18 Cl -0.056 7.056 19 H 0.298 0.702 20 H 0.139 0.861 21 H 0.117 0.883 22 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.059 3.370 1.839 3.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.364 5.364 2 C -0.156 4.156 3 Si 0.749 3.251 4 H -0.173 1.173 5 H -0.191 1.191 6 H -0.189 1.189 7 C -0.449 4.449 8 H 0.120 0.880 9 C 0.100 3.900 10 C -0.143 4.143 11 C -0.114 4.114 12 C -0.214 4.214 13 C -0.036 4.036 14 N 0.466 4.534 15 O -0.409 6.409 16 O -0.370 6.370 17 C -0.145 4.145 18 Cl -0.028 7.028 19 H 0.111 0.889 20 H 0.156 0.844 21 H 0.135 0.865 22 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.410 4.013 1.969 4.489 hybrid contribution 0.399 0.225 -0.280 0.536 sum -0.012 4.238 1.689 4.562 Atomic orbital electron populations 1.69055 1.09011 1.31670 1.26694 1.27617 0.94686 1.02583 0.90700 0.85918 0.81498 0.78426 0.79303 1.17276 1.19088 1.18906 1.20999 0.97751 0.88847 1.37292 0.88006 1.17298 0.92120 0.89789 0.90795 1.21519 0.96882 0.98027 0.97868 1.20439 0.99445 0.91492 1.00049 1.20267 0.97105 0.99360 1.04657 1.19942 0.99533 0.78231 1.05907 1.50719 1.00281 1.04582 0.97858 1.96163 1.58861 1.21162 1.64668 1.96249 1.10930 1.96008 1.33774 1.20699 0.95313 0.92608 1.05901 1.98290 1.36992 1.98506 1.68963 0.88922 0.84384 0.86517 0.85603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -15.54 10.96 55.99 0.61 -14.93 14 2 C 0.07 1.50 5.36 -15.18 -0.08 1.42 14 3 Si 0.93 15.44 29.67 -169.99 -5.04 10.39 14 4 H -0.25 -4.23 7.11 56.52 0.40 -3.82 14 5 H -0.27 -4.39 7.11 56.52 0.40 -3.99 14 6 H -0.26 -4.27 7.11 56.52 0.40 -3.87 14 7 C -0.42 -9.64 8.81 -35.50 -0.31 -9.96 14 8 H 0.10 2.29 7.17 -52.49 -0.38 1.91 14 9 C 0.10 2.46 5.62 -106.75 -0.60 1.86 14 10 C -0.12 -2.69 8.72 -39.09 -0.34 -3.03 14 11 C -0.09 -1.90 9.97 -40.01 -0.40 -2.30 14 12 C -0.19 -4.12 9.59 -39.19 -0.38 -4.49 14 13 C 0.05 1.21 6.88 -79.98 -0.55 0.66 14 14 N -0.01 -0.17 4.98 33.95 0.17 -0.01 14 15 O -0.23 -5.34 19.14 -31.57 -0.60 -5.94 14 16 O -0.17 -4.17 16.59 -31.57 -0.52 -4.70 14 17 C -0.12 -2.76 6.40 -38.51 -0.25 -3.00 14 18 Cl -0.06 -1.27 24.43 -51.86 -1.27 -2.54 14 19 H 0.30 5.44 8.27 -40.82 -0.34 5.10 14 20 H 0.14 2.95 6.11 -52.49 -0.32 2.63 14 21 H 0.12 1.93 8.06 -52.49 -0.42 1.51 14 22 H 0.13 2.48 7.56 -52.49 -0.40 2.09 14 LS Contribution 225.60 15.07 3.40 3.40 Total: -1.00 -24.80 225.60 -6.81 -31.61 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: -0.65 Total: 1.55 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: -2.91 Total: -18.85 kcal Atomic # 7 Polarization: -15.71 SS G_CDS: 0.78 Total: -14.93 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: -1.13 Total: -10.64 kcal Atomic # 14 Polarization: 15.44 SS G_CDS: -5.04 Total: 10.39 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -1.27 Total: -2.54 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -24.80 -6.81 -31.61 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034161190.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.291 kcal (2) G-P(sol) polarization free energy of solvation -24.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds