Wall clock time and date at job start Mon Mar 30 2020 03:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46840 * 111.00345 * 2 1 4 4 C 1.53036 * 109.52442 * 185.84097 * 3 2 1 5 5 C 1.53125 * 109.31172 * 300.84079 * 4 3 2 6 6 C 1.53120 * 109.15553 * 57.59400 * 5 4 3 7 7 H 1.08998 * 109.50314 * 62.37028 * 6 5 4 8 8 C 1.53006 * 109.49879 * 182.44528 * 6 5 4 9 9 N 1.46902 * 109.46626 * 184.91994 * 8 6 5 10 10 C 1.46905 * 110.99800 * 180.02562 * 9 8 6 11 11 C 1.53000 * 109.47234 * 180.02562 * 10 9 8 12 12 C 1.50695 * 109.46861 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00407 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99561 * 180.02562 * 12 11 10 15 15 N 1.31504 * 120.00353 * 359.97438 * 14 12 11 16 16 Si 1.86809 * 119.99803 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.46966 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47145 * 119.99779 * 16 14 12 19 19 H 1.48492 * 109.47159 * 239.99932 * 16 14 12 20 20 C 1.46850 * 110.99911 * 124.21361 * 2 1 3 21 21 H 1.09004 * 109.46537 * 295.79112 * 1 2 3 22 22 H 1.08995 * 109.47135 * 55.79036 * 1 2 3 23 23 H 1.09000 * 109.47522 * 175.79493 * 1 2 3 24 24 H 1.09001 * 109.46397 * 305.85673 * 3 2 1 25 25 H 1.09000 * 109.46500 * 65.82706 * 3 2 1 26 26 H 1.09003 * 109.50528 * 60.75891 * 4 3 2 27 27 H 1.08998 * 109.50681 * 180.87668 * 4 3 2 28 28 H 1.09001 * 109.49116 * 297.70958 * 5 4 3 29 29 H 1.08996 * 109.55422 * 177.51581 * 5 4 3 30 30 H 1.08993 * 109.46955 * 304.92341 * 8 6 5 31 31 H 1.09000 * 109.47050 * 64.92170 * 8 6 5 32 32 H 1.00898 * 110.99915 * 56.05185 * 9 8 6 33 33 H 1.09002 * 109.47091 * 300.00139 * 10 9 8 34 34 H 1.09001 * 109.46854 * 60.00166 * 10 9 8 35 35 H 1.08997 * 109.46649 * 299.99858 * 11 10 9 36 36 H 1.09001 * 109.47170 * 60.00230 * 11 10 9 37 37 H 0.96997 * 120.00566 * 180.02562 * 15 14 12 38 38 H 1.08995 * 109.46412 * 54.13864 * 20 2 1 39 39 H 1.09004 * 109.45905 * 294.17069 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3708 0.0000 4 6 3.5182 1.3340 -0.1468 5 6 4.1196 0.5365 1.0137 6 6 3.5181 -0.8716 1.0208 7 1 3.7813 -1.3844 0.0956 8 6 4.0680 -1.6560 2.2138 9 7 3.5833 -3.0415 2.1542 10 6 4.0920 -3.8263 3.2871 11 6 3.5676 -5.2604 3.1904 12 6 4.0888 -6.0652 4.3529 13 1 4.7304 -5.6006 5.0870 14 6 3.7476 -7.3952 4.4787 15 7 2.9669 -7.9612 3.5845 16 14 4.3932 -8.3928 5.9201 17 1 5.2432 -7.5292 6.7786 18 1 3.2507 -8.9095 6.7157 19 1 5.1983 -9.5325 5.4123 20 6 1.9952 -0.7709 1.1337 21 1 -0.3632 0.4472 0.9254 22 1 -0.3633 0.5777 -0.8498 23 1 -0.3634 -1.0249 -0.0754 24 1 1.5635 1.9257 -0.8329 25 1 1.7326 1.8608 0.9376 26 1 3.7814 0.8565 -1.0907 27 1 3.9100 2.3510 -0.1311 28 1 3.8902 1.0353 1.9554 29 1 5.2004 0.4702 0.8894 30 1 5.1575 -1.6504 2.1812 31 1 3.7299 -1.1923 3.1405 32 1 3.8289 -3.4730 1.2758 33 1 5.1817 -3.8359 3.2624 34 1 3.7536 -3.3775 4.2210 35 1 2.4779 -5.2511 3.2149 36 1 3.9063 -5.7089 2.2565 37 1 2.7265 -8.8967 3.6732 38 1 1.5633 -1.7716 1.1242 39 1 1.7325 -0.2709 2.0660 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044537246.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:53 Heat of formation + Delta-G solvation = -21.000987 kcal Electronic energy + Delta-G solvation = -15700.638160 eV Core-core repulsion = 13255.876944 eV Total energy + Delta-G solvation = -2444.761216 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.18119 -36.06180 -33.80282 -32.79048 -31.28814 -28.80284 -26.79416 -25.30905 -23.46762 -22.68990 -21.16131 -20.54274 -19.56043 -16.28809 -15.89161 -15.47944 -14.87957 -14.58147 -14.45749 -14.31561 -14.11861 -13.18863 -13.00581 -12.70326 -12.39303 -12.22947 -12.04656 -11.88746 -11.50580 -11.12041 -10.97073 -10.92179 -10.59539 -10.55165 -10.35413 -10.28027 -9.93267 -9.32240 -9.10177 -8.33672 -8.33149 -7.75844 -5.97928 -4.00366 3.32326 3.39589 3.43712 3.92118 4.44199 4.61438 4.79997 4.84733 5.06107 5.11387 5.28407 5.37986 5.38297 5.45547 5.49434 5.59548 5.69910 5.76994 5.83009 5.85418 5.88556 5.96774 6.02705 6.09118 6.34946 6.39446 6.44990 6.47853 7.01285 7.08225 7.10915 7.52356 7.76450 7.86063 8.00394 8.11553 8.46277 9.07284 9.63388 11.13571 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.050925 B = 0.004313 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.693976 B = 6491.026122 C = 6871.307981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.547 5.547 3 C 0.055 3.945 4 C -0.115 4.115 5 C -0.117 4.117 6 C -0.080 4.080 7 H 0.076 0.924 8 C 0.063 3.937 9 N -0.691 5.691 10 C 0.066 3.934 11 C 0.025 3.975 12 C -0.521 4.521 13 H 0.054 0.946 14 C 0.058 3.942 15 N -0.893 5.893 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.069 3.931 21 H 0.022 0.978 22 H 0.063 0.937 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.029 0.971 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.025 0.975 31 H 0.065 0.935 32 H 0.336 0.664 33 H 0.014 0.986 34 H 0.056 0.944 35 H 0.025 0.975 36 H 0.014 0.986 37 H 0.260 0.740 38 H 0.091 0.909 39 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.888 18.199 -7.116 19.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.271 5.271 3 C -0.074 4.074 4 C -0.153 4.153 5 C -0.155 4.155 6 C -0.100 4.100 7 H 0.095 0.905 8 C -0.067 4.067 9 N -0.322 5.322 10 C -0.062 4.062 11 C -0.013 4.013 12 C -0.560 4.560 13 H 0.073 0.927 14 C -0.144 4.144 15 N -0.533 5.533 16 Si 0.720 3.280 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.059 4.059 21 H 0.041 0.959 22 H 0.082 0.918 23 H 0.090 0.910 24 H 0.088 0.912 25 H 0.047 0.953 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.043 0.957 31 H 0.083 0.917 32 H 0.154 0.846 33 H 0.032 0.968 34 H 0.075 0.925 35 H 0.043 0.957 36 H 0.032 0.968 37 H 0.069 0.931 38 H 0.110 0.890 39 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -1.421 17.952 -7.266 19.419 hybrid contribution 0.957 -0.355 1.312 1.662 sum -0.464 17.598 -5.954 18.584 Atomic orbital electron populations 1.22327 0.87436 1.02485 0.99939 1.61925 1.07460 1.13211 1.44494 1.22081 0.95670 0.89652 0.99950 1.21562 0.94486 0.99799 0.99458 1.21623 0.99866 0.95673 0.98351 1.21183 0.94740 0.95028 0.99015 0.90523 1.21948 0.96372 0.90590 0.97780 1.60579 1.63530 1.01433 1.06628 1.22145 0.95699 0.96442 0.91919 1.19071 0.97214 0.88144 0.96838 1.21228 1.30148 0.95160 1.09454 0.92749 1.25002 0.95187 0.97894 0.96278 1.69977 1.36002 1.12315 1.34960 0.86542 0.78713 0.80136 0.82641 1.19786 1.20982 1.21026 1.22079 0.94861 0.98885 0.90042 0.95933 0.91797 0.91038 0.91228 0.95282 0.91147 0.91810 0.92318 0.91870 0.95734 0.91685 0.84643 0.96779 0.92516 0.95679 0.96794 0.93057 0.89019 0.95357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.59 60.06 0.58 0.85 16 2 N -0.55 -6.62 4.91 -242.97 -1.19 -7.81 16 3 C 0.05 0.56 5.46 -3.84 -0.02 0.54 16 4 C -0.12 -1.11 6.09 -26.65 -0.16 -1.27 16 5 C -0.12 -1.25 5.29 -26.60 -0.14 -1.39 16 6 C -0.08 -1.03 2.49 -90.54 -0.23 -1.25 16 7 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 8 C 0.06 0.93 5.08 -3.82 -0.02 0.91 16 9 N -0.69 -12.43 5.98 -113.77 -0.68 -13.11 16 10 C 0.07 1.42 5.62 -3.82 -0.02 1.40 16 11 C 0.02 0.66 5.23 -27.89 -0.15 0.51 16 12 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 13 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -27.21 13.28 55.43 0.74 -26.47 16 16 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 17 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 C 0.07 0.92 4.63 -3.83 -0.02 0.90 16 21 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 22 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 23 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 25 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.34 5.91 8.73 -39.29 -0.34 5.57 16 33 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.09 1.40 7.76 -51.93 -0.40 0.99 16 39 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 309.94 15.07 4.67 4.67 Total: -1.00 -30.03 309.94 -9.55 -39.57 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -7.47 Total: -1.15 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -0.59 Total: -12.54 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: -1.14 Total: -47.39 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.03 -9.55 -39.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044537246.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.573 kcal (2) G-P(sol) polarization free energy of solvation -30.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds