Wall clock time and date at job start Mon Mar 30 2020 03:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46840 * 111.00345 * 2 1 4 4 C 1.53036 * 109.52442 * 185.84097 * 3 2 1 5 5 C 1.53125 * 109.31172 * 300.84079 * 4 3 2 6 6 C 1.53120 * 109.15553 * 57.59400 * 5 4 3 7 7 H 1.08998 * 109.50314 * 62.37028 * 6 5 4 8 8 C 1.53006 * 109.49879 * 182.44528 * 6 5 4 9 9 N 1.46902 * 109.46626 * 184.91994 * 8 6 5 10 10 C 1.46905 * 110.99800 * 180.02562 * 9 8 6 11 11 C 1.53000 * 109.47234 * 180.02562 * 10 9 8 12 12 C 1.50695 * 109.46861 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00407 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99561 * 180.02562 * 12 11 10 15 15 N 1.31504 * 120.00353 * 359.97438 * 14 12 11 16 16 Si 1.86809 * 119.99803 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.46966 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47145 * 119.99779 * 16 14 12 19 19 H 1.48492 * 109.47159 * 239.99932 * 16 14 12 20 20 C 1.46850 * 110.99911 * 124.21361 * 2 1 3 21 21 H 1.09004 * 109.46537 * 295.79112 * 1 2 3 22 22 H 1.08995 * 109.47135 * 55.79036 * 1 2 3 23 23 H 1.09000 * 109.47522 * 175.79493 * 1 2 3 24 24 H 1.09001 * 109.46397 * 305.85673 * 3 2 1 25 25 H 1.09000 * 109.46500 * 65.82706 * 3 2 1 26 26 H 1.09003 * 109.50528 * 60.75891 * 4 3 2 27 27 H 1.08998 * 109.50681 * 180.87668 * 4 3 2 28 28 H 1.09001 * 109.49116 * 297.70958 * 5 4 3 29 29 H 1.08996 * 109.55422 * 177.51581 * 5 4 3 30 30 H 1.08993 * 109.46955 * 304.92341 * 8 6 5 31 31 H 1.09000 * 109.47050 * 64.92170 * 8 6 5 32 32 H 1.00898 * 110.99915 * 56.05185 * 9 8 6 33 33 H 1.09002 * 109.47091 * 300.00139 * 10 9 8 34 34 H 1.09001 * 109.46854 * 60.00166 * 10 9 8 35 35 H 1.08997 * 109.46649 * 299.99858 * 11 10 9 36 36 H 1.09001 * 109.47170 * 60.00230 * 11 10 9 37 37 H 0.96997 * 120.00566 * 180.02562 * 15 14 12 38 38 H 1.08995 * 109.46412 * 54.13864 * 20 2 1 39 39 H 1.09004 * 109.45905 * 294.17069 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3708 0.0000 4 6 3.5182 1.3340 -0.1468 5 6 4.1196 0.5365 1.0137 6 6 3.5181 -0.8716 1.0208 7 1 3.7813 -1.3844 0.0956 8 6 4.0680 -1.6560 2.2138 9 7 3.5833 -3.0415 2.1542 10 6 4.0920 -3.8263 3.2871 11 6 3.5676 -5.2604 3.1904 12 6 4.0888 -6.0652 4.3529 13 1 4.7304 -5.6006 5.0870 14 6 3.7476 -7.3952 4.4787 15 7 2.9669 -7.9612 3.5845 16 14 4.3932 -8.3928 5.9201 17 1 5.2432 -7.5292 6.7786 18 1 3.2507 -8.9095 6.7157 19 1 5.1983 -9.5325 5.4123 20 6 1.9952 -0.7709 1.1337 21 1 -0.3632 0.4472 0.9254 22 1 -0.3633 0.5777 -0.8498 23 1 -0.3634 -1.0249 -0.0754 24 1 1.5635 1.9257 -0.8329 25 1 1.7326 1.8608 0.9376 26 1 3.7814 0.8565 -1.0907 27 1 3.9100 2.3510 -0.1311 28 1 3.8902 1.0353 1.9554 29 1 5.2004 0.4702 0.8894 30 1 5.1575 -1.6504 2.1812 31 1 3.7299 -1.1923 3.1405 32 1 3.8289 -3.4730 1.2758 33 1 5.1817 -3.8359 3.2624 34 1 3.7536 -3.3775 4.2210 35 1 2.4779 -5.2511 3.2149 36 1 3.9063 -5.7089 2.2565 37 1 2.7265 -8.8967 3.6732 38 1 1.5633 -1.7716 1.1242 39 1 1.7325 -0.2709 2.0660 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044537246.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:53 Heat of formation + Delta-G solvation = -41.361611 kcal Electronic energy + Delta-G solvation = -15701.521063 eV Core-core repulsion = 13255.876944 eV Total energy + Delta-G solvation = -2445.644119 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.14824 -37.51677 -35.37472 -34.31032 -32.59760 -30.51499 -27.69750 -26.89469 -25.04752 -23.66482 -22.49774 -22.11856 -20.56622 -18.50731 -17.03172 -16.54503 -16.51571 -15.98851 -15.56230 -15.42178 -15.38728 -14.69873 -14.35157 -13.94354 -13.77366 -13.52265 -13.18727 -13.07520 -12.95434 -12.82307 -12.44175 -12.40052 -11.98641 -11.86848 -11.60478 -11.52047 -11.34353 -11.21392 -11.00326 -10.57280 -9.26634 -9.24453 -8.20566 -6.32275 1.40318 1.40890 1.54262 2.40482 3.01728 3.12889 3.33696 3.90608 3.92028 4.00937 4.17371 4.34837 4.46033 4.51768 4.55158 4.59212 4.61176 4.68617 4.75845 4.82030 4.88857 4.91266 5.01317 5.04968 5.07228 5.12370 5.20010 5.36556 5.44736 5.50310 5.67446 5.78908 6.13961 6.14558 6.21934 6.29091 6.55251 6.85365 7.37199 8.91893 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.050925 B = 0.004313 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.693976 B = 6491.026122 C = 6871.307981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.558 5.558 3 C 0.052 3.948 4 C -0.112 4.112 5 C -0.113 4.113 6 C -0.073 4.073 7 H 0.070 0.930 8 C 0.067 3.933 9 N -0.696 5.696 10 C 0.085 3.915 11 C 0.031 3.969 12 C -0.545 4.545 13 H 0.060 0.940 14 C 0.001 3.999 15 N -0.932 5.932 16 Si 0.968 3.032 17 H -0.262 1.262 18 H -0.278 1.278 19 H -0.277 1.277 20 C 0.074 3.926 21 H 0.023 0.977 22 H 0.082 0.918 23 H 0.062 0.938 24 H 0.085 0.915 25 H 0.029 0.971 26 H 0.066 0.934 27 H 0.086 0.914 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.034 0.966 31 H 0.064 0.936 32 H 0.338 0.662 33 H 0.018 0.982 34 H 0.056 0.944 35 H -0.007 1.007 36 H -0.009 1.009 37 H 0.264 0.736 38 H 0.065 0.935 39 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.041 19.535 -6.740 20.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.283 5.283 3 C -0.076 4.076 4 C -0.149 4.149 5 C -0.151 4.151 6 C -0.092 4.092 7 H 0.088 0.912 8 C -0.063 4.063 9 N -0.327 5.327 10 C -0.044 4.044 11 C -0.006 4.006 12 C -0.584 4.584 13 H 0.078 0.922 14 C -0.197 4.197 15 N -0.572 5.572 16 Si 0.792 3.208 17 H -0.186 1.186 18 H -0.203 1.203 19 H -0.202 1.202 20 C -0.054 4.054 21 H 0.042 0.958 22 H 0.100 0.900 23 H 0.081 0.919 24 H 0.103 0.897 25 H 0.048 0.952 26 H 0.085 0.915 27 H 0.105 0.895 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.052 0.948 31 H 0.083 0.917 32 H 0.156 0.844 33 H 0.036 0.964 34 H 0.074 0.926 35 H 0.012 0.988 36 H 0.010 0.990 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -0.489 19.316 -6.899 20.516 hybrid contribution 0.620 -0.741 1.137 1.492 sum 0.131 18.574 -5.762 19.448 Atomic orbital electron populations 1.22363 0.86735 1.02350 1.00802 1.61939 1.08302 1.14429 1.43625 1.22186 0.96223 0.88536 1.00619 1.21564 0.93928 1.00830 0.98610 1.21604 1.00378 0.94044 0.99114 1.21103 0.94352 0.96221 0.97559 0.91199 1.21998 0.96916 0.88522 0.98818 1.60488 1.63839 1.02752 1.05596 1.21761 0.95573 0.93873 0.93217 1.18925 0.95154 0.91223 0.95319 1.21653 1.30478 0.96005 1.10221 0.92170 1.25985 0.95221 0.99208 0.99321 1.70111 1.37158 1.12902 1.37041 0.85360 0.78269 0.78352 0.78809 1.18557 1.20331 1.20242 1.21923 0.95245 0.97757 0.90452 0.95809 0.89962 0.91920 0.89690 0.95231 0.91525 0.89534 0.92021 0.90853 0.94804 0.91728 0.84439 0.96362 0.92585 0.98816 0.99036 0.92720 0.91630 0.95977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.59 127.69 1.22 1.74 16 2 N -0.56 -12.96 4.91 -922.61 -4.53 -17.49 16 3 C 0.05 0.95 5.46 86.33 0.47 1.42 16 4 C -0.11 -1.86 6.09 30.65 0.19 -1.67 16 5 C -0.11 -2.16 5.29 30.68 0.16 -2.00 16 6 C -0.07 -1.80 2.49 -10.74 -0.03 -1.82 16 7 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 8 C 0.07 1.92 5.08 86.31 0.44 2.35 16 9 N -0.70 -25.24 5.98 -513.86 -3.07 -28.31 16 10 C 0.08 3.66 5.62 86.30 0.49 4.14 16 11 C 0.03 1.71 5.23 29.85 0.16 1.86 16 12 C -0.55 -31.72 9.11 25.60 0.23 -31.48 16 13 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 14 C 0.00 0.03 5.46 84.66 0.46 0.49 16 15 N -0.93 -57.71 13.28 21.45 0.28 -57.43 16 16 Si 0.97 44.74 29.54 68.60 2.03 46.77 16 17 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 20 C 0.07 1.97 4.63 86.33 0.40 2.37 16 21 H 0.02 0.47 8.14 -2.38 -0.02 0.45 16 22 H 0.08 1.35 8.09 -2.39 -0.02 1.33 16 23 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.08 1.31 8.09 -2.39 -0.02 1.29 16 25 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.34 12.08 8.73 -89.70 -0.78 11.30 16 33 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 35 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 36 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 37 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 38 H 0.07 2.06 7.76 -2.39 -0.02 2.04 16 39 H 0.02 0.60 8.14 -2.38 -0.02 0.58 16 Total: -1.00 -64.39 309.94 -0.90 -65.29 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 0.20 Total: 13.75 kcal Atomic # 6 Polarization: -26.78 SS G_CDS: 4.19 Total: -22.58 kcal Atomic # 7 Polarization: -95.91 SS G_CDS: -7.32 Total: -103.23 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -64.39 -0.90 -65.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044537246.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.931 kcal (2) G-P(sol) polarization free energy of solvation -64.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds