Wall clock time and date at job start Mon Mar 30 2020 03:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 111.00288 * 2 1 4 4 C 1.46901 * 111.00208 * 123.95906 * 2 1 3 5 5 C 1.52995 * 109.47362 * 66.04267 * 4 2 1 6 6 H 1.09003 * 109.88065 * 302.91793 * 5 4 2 7 7 C 1.54316 * 109.89042 * 181.71465 * 5 4 2 8 8 C 1.55142 * 103.02068 * 218.31066 * 7 5 4 9 9 C 1.54910 * 101.65046 * 35.65479 * 8 7 5 10 10 N 1.47448 * 109.88753 * 63.94507 * 5 4 2 11 11 C 1.46898 * 111.00101 * 356.14675 * 10 5 4 12 12 C 1.52994 * 109.47169 * 171.91448 * 11 10 5 13 13 C 1.50700 * 109.47148 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00382 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00039 * 180.02562 * 13 12 11 16 16 N 1.31524 * 119.99807 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 120.00251 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.47052 * 89.99924 * 17 15 13 19 19 H 1.48502 * 109.47202 * 210.00250 * 17 15 13 20 20 H 1.48500 * 109.46801 * 330.00035 * 17 15 13 21 21 H 1.08998 * 109.46804 * 296.04375 * 1 2 3 22 22 H 1.09002 * 109.47146 * 56.04516 * 1 2 3 23 23 H 1.09004 * 109.47115 * 176.04358 * 1 2 3 24 24 H 1.08990 * 109.47558 * 183.95402 * 3 2 1 25 25 H 1.08997 * 109.47136 * 303.96109 * 3 2 1 26 26 H 1.09002 * 109.46737 * 63.95175 * 3 2 1 27 27 H 1.08999 * 109.47311 * 186.04676 * 4 2 1 28 28 H 1.09003 * 109.46480 * 306.04592 * 4 2 1 29 29 H 1.08997 * 110.70641 * 336.69306 * 7 5 4 30 30 H 1.09002 * 110.70618 * 99.93317 * 7 5 4 31 31 H 1.08998 * 110.99295 * 277.56369 * 8 7 5 32 32 H 1.09001 * 110.99258 * 153.74397 * 8 7 5 33 33 H 1.09004 * 110.36868 * 204.10322 * 9 8 7 34 34 H 1.08993 * 110.37606 * 81.75927 * 9 8 7 35 35 H 1.08996 * 109.47650 * 291.92023 * 11 10 5 36 36 H 1.09007 * 109.46730 * 51.91707 * 11 10 5 37 37 H 1.09001 * 109.47486 * 300.00339 * 12 11 10 38 38 H 1.08995 * 109.47154 * 60.00802 * 12 11 10 39 39 H 0.97002 * 119.99910 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7661 1.1375 5 6 1.6315 -2.2427 0.9702 6 1 0.5506 -2.3500 0.8796 7 6 2.1430 -3.0500 2.1818 8 6 2.6286 -4.3757 1.5387 9 6 3.2022 -3.8768 0.1890 10 7 2.2921 -2.7893 -0.2293 11 6 3.0230 -1.7400 -0.9522 12 6 3.8553 -2.3745 -2.0681 13 6 4.6055 -1.2980 -2.8093 14 1 4.4990 -0.2645 -2.5143 15 6 5.4271 -1.6323 -3.8649 16 7 6.0814 -0.6927 -4.5121 17 14 5.6108 -3.4196 -4.3759 18 1 4.5824 -3.7515 -5.3945 19 1 6.9635 -3.6338 -4.9500 20 1 5.4326 -4.2945 -3.1892 21 1 -0.3633 0.4512 0.9233 22 1 -0.3633 0.5740 -0.8524 23 1 -0.3633 -1.0252 -0.0709 24 1 3.0827 1.3432 -0.0709 25 1 1.5898 1.9163 -0.8523 26 1 1.7044 1.8723 0.9233 27 1 3.0798 -0.6612 1.1756 28 1 1.5611 -0.3873 2.0627 29 1 2.9695 -2.5324 2.6687 30 1 1.3347 -3.2380 2.8886 31 1 1.7957 -5.0606 1.3797 32 1 3.4055 -4.8420 2.1446 33 1 3.1955 -4.6812 -0.5466 34 1 4.2137 -3.4940 0.3247 35 1 2.3132 -1.0347 -1.3844 36 1 3.6822 -1.2145 -0.2611 37 1 4.5651 -3.0798 -1.6359 38 1 3.1961 -2.8998 -2.7591 39 1 6.6592 -0.9279 -5.2550 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061644159.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:24 Heat of formation + Delta-G solvation = 24.500618 kcal Electronic energy + Delta-G solvation = -16831.507008 eV Core-core repulsion = 14388.718890 eV Total energy + Delta-G solvation = -2442.788118 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.54835 -36.41635 -33.51399 -31.72587 -30.19996 -28.60776 -27.41934 -25.48449 -24.20794 -22.06959 -21.14158 -20.21165 -18.66265 -16.74825 -16.06111 -15.30853 -15.19376 -14.61592 -14.09196 -13.96412 -13.65906 -13.05721 -12.56060 -12.52752 -12.26212 -12.15164 -11.77303 -11.52900 -11.49895 -11.14546 -10.98038 -10.83026 -10.63124 -10.57984 -10.38517 -9.93327 -9.66397 -9.49296 -9.02863 -8.42186 -7.75136 -7.50160 -5.93062 -3.88623 3.39920 3.46116 3.51900 4.09724 4.56475 4.66319 4.87984 4.92967 5.12206 5.35385 5.37105 5.42149 5.48311 5.51651 5.65835 5.73549 5.77778 5.78779 5.90399 5.93930 6.05780 6.10008 6.19960 6.27792 6.39059 6.47500 6.65311 6.70343 7.14540 7.21609 7.25652 7.45069 7.61496 7.85130 7.92242 8.07687 8.69677 9.13839 9.71248 11.20640 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.024190 B = 0.009160 C = 0.007119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.209944 B = 3056.184613 C = 3932.267027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.526 5.526 3 C 0.024 3.976 4 C 0.038 3.962 5 C 0.077 3.923 6 H 0.078 0.922 7 C -0.137 4.137 8 C -0.130 4.130 9 C 0.041 3.959 10 N -0.521 5.521 11 C 0.059 3.941 12 C -0.016 4.016 13 C -0.508 4.508 14 H 0.071 0.929 15 C 0.064 3.936 16 N -0.909 5.909 17 Si 0.880 3.120 18 H -0.278 1.278 19 H -0.291 1.291 20 H -0.266 1.266 21 H 0.017 0.983 22 H 0.066 0.934 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.017 0.983 27 H 0.081 0.919 28 H 0.030 0.970 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.046 0.954 35 H 0.115 0.885 36 H 0.020 0.980 37 H 0.008 0.992 38 H 0.014 0.986 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.720 -2.235 13.423 16.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.249 5.249 3 C -0.124 4.124 4 C -0.090 4.090 5 C -0.033 4.033 6 H 0.096 0.904 7 C -0.176 4.176 8 C -0.168 4.168 9 C -0.087 4.087 10 N -0.245 5.245 11 C -0.068 4.068 12 C -0.054 4.054 13 C -0.546 4.546 14 H 0.089 0.911 15 C -0.136 4.136 16 N -0.548 5.548 17 Si 0.707 3.293 18 H -0.204 1.204 19 H -0.217 1.217 20 H -0.191 1.191 21 H 0.035 0.965 22 H 0.085 0.915 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.035 0.965 27 H 0.099 0.901 28 H 0.048 0.952 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.132 0.868 36 H 0.038 0.962 37 H 0.026 0.974 38 H 0.033 0.967 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.815 -2.605 12.492 16.099 hybrid contribution 0.623 -0.126 0.886 1.090 sum -9.192 -2.731 13.378 16.460 Atomic orbital electron populations 1.22439 0.88004 1.02442 0.99738 1.62415 1.07422 1.13293 1.41734 1.22392 1.01611 0.88657 0.99777 1.22627 1.00945 0.94486 0.90956 1.22463 0.99694 0.91496 0.89598 0.90411 1.22817 1.00616 0.96593 0.97608 1.22708 1.00482 0.96811 0.96793 1.23043 0.95459 0.95265 0.94932 1.63851 1.29995 1.11105 1.19574 1.22784 0.96390 0.92803 0.94788 1.19728 0.94588 0.96696 0.94405 1.21104 1.24890 0.94647 1.13994 0.91118 1.25007 0.95445 0.97002 0.96163 1.69927 1.30243 1.32488 1.22185 0.86776 0.77014 0.86344 0.79117 1.20371 1.21720 1.19114 0.96480 0.91500 0.90933 0.90877 0.91196 0.96463 0.90068 0.95152 0.91680 0.91462 0.91152 0.91496 0.90835 0.93531 0.86763 0.96189 0.97387 0.96747 0.92985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.33 60.06 0.56 0.84 16 2 N -0.53 -7.97 1.80 -251.26 -0.45 -8.42 16 3 C 0.02 0.33 9.57 60.06 0.57 0.91 16 4 C 0.04 0.55 3.53 -3.83 -0.01 0.54 16 5 C 0.08 1.12 3.36 -66.73 -0.22 0.90 16 6 H 0.08 1.11 6.45 -51.93 -0.34 0.77 16 7 C -0.14 -1.70 6.47 -24.91 -0.16 -1.86 16 8 C -0.13 -1.69 7.08 -24.59 -0.17 -1.86 16 9 C 0.04 0.70 5.31 -2.30 -0.01 0.68 16 10 N -0.52 -9.48 5.30 -223.35 -1.18 -10.67 16 11 C 0.06 1.25 3.57 -3.83 -0.01 1.24 16 12 C -0.02 -0.41 3.75 -27.89 -0.10 -0.52 16 13 C -0.51 -14.93 9.66 -34.44 -0.33 -15.27 16 14 H 0.07 2.22 7.99 -52.48 -0.42 1.80 16 15 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 16 N -0.91 -28.71 13.96 55.43 0.77 -27.94 16 17 Si 0.88 22.69 27.47 -169.99 -4.67 18.02 16 18 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 20 H -0.27 -6.65 6.54 56.52 0.37 -6.28 16 21 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 22 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 23 H 0.07 0.93 6.42 -51.93 -0.33 0.60 16 24 H 0.07 1.12 8.12 -51.93 -0.42 0.70 16 25 H 0.07 0.95 8.12 -51.93 -0.42 0.53 16 26 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.08 1.29 6.26 -51.93 -0.32 0.96 16 28 H 0.03 0.39 8.12 -51.93 -0.42 -0.04 16 29 H 0.06 0.79 7.85 -51.93 -0.41 0.38 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.05 0.85 7.14 -51.93 -0.37 0.48 16 35 H 0.11 2.54 5.75 -51.93 -0.30 2.24 16 36 H 0.02 0.43 5.88 -51.92 -0.31 0.13 16 37 H 0.01 0.20 5.63 -51.93 -0.29 -0.09 16 38 H 0.01 0.37 7.57 -51.93 -0.39 -0.02 16 39 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 292.95 15.07 4.41 4.41 Total: -1.00 -31.39 292.95 -7.98 -39.38 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -6.87 Total: -2.21 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: 0.00 Total: -12.58 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: -0.86 Total: -47.02 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.67 Total: 18.02 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.39 -7.98 -39.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061644159.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.880 kcal (2) G-P(sol) polarization free energy of solvation -31.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds