Wall clock time and date at job start Mon Mar 30 2020 03:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 111.00288 * 2 1 4 4 C 1.46901 * 111.00208 * 123.95906 * 2 1 3 5 5 C 1.52995 * 109.47362 * 66.04267 * 4 2 1 6 6 H 1.09003 * 109.88065 * 302.91793 * 5 4 2 7 7 C 1.54316 * 109.89042 * 181.71465 * 5 4 2 8 8 C 1.55142 * 103.02068 * 218.31066 * 7 5 4 9 9 C 1.54910 * 101.65046 * 35.65479 * 8 7 5 10 10 N 1.47448 * 109.88753 * 63.94507 * 5 4 2 11 11 C 1.46898 * 111.00101 * 356.14675 * 10 5 4 12 12 C 1.52994 * 109.47169 * 171.91448 * 11 10 5 13 13 C 1.50700 * 109.47148 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00382 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00039 * 180.02562 * 13 12 11 16 16 N 1.31524 * 119.99807 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 120.00251 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.47052 * 89.99924 * 17 15 13 19 19 H 1.48502 * 109.47202 * 210.00250 * 17 15 13 20 20 H 1.48500 * 109.46801 * 330.00035 * 17 15 13 21 21 H 1.08998 * 109.46804 * 296.04375 * 1 2 3 22 22 H 1.09002 * 109.47146 * 56.04516 * 1 2 3 23 23 H 1.09004 * 109.47115 * 176.04358 * 1 2 3 24 24 H 1.08990 * 109.47558 * 183.95402 * 3 2 1 25 25 H 1.08997 * 109.47136 * 303.96109 * 3 2 1 26 26 H 1.09002 * 109.46737 * 63.95175 * 3 2 1 27 27 H 1.08999 * 109.47311 * 186.04676 * 4 2 1 28 28 H 1.09003 * 109.46480 * 306.04592 * 4 2 1 29 29 H 1.08997 * 110.70641 * 336.69306 * 7 5 4 30 30 H 1.09002 * 110.70618 * 99.93317 * 7 5 4 31 31 H 1.08998 * 110.99295 * 277.56369 * 8 7 5 32 32 H 1.09001 * 110.99258 * 153.74397 * 8 7 5 33 33 H 1.09004 * 110.36868 * 204.10322 * 9 8 7 34 34 H 1.08993 * 110.37606 * 81.75927 * 9 8 7 35 35 H 1.08996 * 109.47650 * 291.92023 * 11 10 5 36 36 H 1.09007 * 109.46730 * 51.91707 * 11 10 5 37 37 H 1.09001 * 109.47486 * 300.00339 * 12 11 10 38 38 H 1.08995 * 109.47154 * 60.00802 * 12 11 10 39 39 H 0.97002 * 119.99910 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7661 1.1375 5 6 1.6315 -2.2427 0.9702 6 1 0.5506 -2.3500 0.8796 7 6 2.1430 -3.0500 2.1818 8 6 2.6286 -4.3757 1.5387 9 6 3.2022 -3.8768 0.1890 10 7 2.2921 -2.7893 -0.2293 11 6 3.0230 -1.7400 -0.9522 12 6 3.8553 -2.3745 -2.0681 13 6 4.6055 -1.2980 -2.8093 14 1 4.4990 -0.2645 -2.5143 15 6 5.4271 -1.6323 -3.8649 16 7 6.0814 -0.6927 -4.5121 17 14 5.6108 -3.4196 -4.3759 18 1 4.5824 -3.7515 -5.3945 19 1 6.9635 -3.6338 -4.9500 20 1 5.4326 -4.2945 -3.1892 21 1 -0.3633 0.4512 0.9233 22 1 -0.3633 0.5740 -0.8524 23 1 -0.3633 -1.0252 -0.0709 24 1 3.0827 1.3432 -0.0709 25 1 1.5898 1.9163 -0.8523 26 1 1.7044 1.8723 0.9233 27 1 3.0798 -0.6612 1.1756 28 1 1.5611 -0.3873 2.0627 29 1 2.9695 -2.5324 2.6687 30 1 1.3347 -3.2380 2.8886 31 1 1.7957 -5.0606 1.3797 32 1 3.4055 -4.8420 2.1446 33 1 3.1955 -4.6812 -0.5466 34 1 4.2137 -3.4940 0.3247 35 1 2.3132 -1.0347 -1.3844 36 1 3.6822 -1.2145 -0.2611 37 1 4.5651 -3.0798 -1.6359 38 1 3.1961 -2.8998 -2.7591 39 1 6.6592 -0.9279 -5.2550 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061644159.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:23 Heat of formation + Delta-G solvation = 3.630310 kcal Electronic energy + Delta-G solvation = -16832.412013 eV Core-core repulsion = 14388.718890 eV Total energy + Delta-G solvation = -2443.693123 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.81411 -37.57885 -35.50915 -33.61021 -31.40969 -30.34998 -28.49152 -26.63772 -26.07338 -23.51226 -22.43878 -21.60641 -20.09517 -18.91014 -17.39792 -16.56922 -16.43483 -16.07514 -15.84417 -15.31651 -15.15821 -14.69539 -14.22407 -13.87118 -13.65015 -13.28699 -13.20361 -12.98848 -12.81229 -12.56969 -12.45983 -12.26185 -11.94437 -11.79666 -11.72982 -11.60935 -11.50869 -11.31973 -11.20620 -10.73684 -8.96012 -8.92604 -8.26769 -6.28503 1.34801 1.35821 1.48750 2.37673 2.98864 3.08524 3.35848 3.78473 3.85981 3.96767 4.27007 4.28119 4.37404 4.46673 4.52316 4.63357 4.67630 4.73200 4.74674 4.78512 4.84263 4.97687 5.03006 5.06812 5.08920 5.10776 5.16675 5.24465 5.44041 5.53590 5.65503 5.86566 6.08035 6.16743 6.28925 6.45700 6.47153 6.79700 7.35373 8.90023 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.024190 B = 0.009160 C = 0.007119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.209944 B = 3056.184613 C = 3932.267027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.555 5.555 3 C 0.029 3.971 4 C 0.044 3.956 5 C 0.074 3.926 6 H 0.089 0.911 7 C -0.130 4.130 8 C -0.118 4.118 9 C 0.033 3.967 10 N -0.532 5.532 11 C 0.080 3.920 12 C -0.008 4.008 13 C -0.518 4.518 14 H 0.033 0.967 15 C 0.005 3.995 16 N -0.952 5.952 17 Si 0.949 3.051 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.253 1.253 21 H 0.036 0.964 22 H 0.066 0.934 23 H 0.071 0.929 24 H 0.048 0.952 25 H 0.069 0.931 26 H 0.039 0.961 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.063 0.937 34 H 0.026 0.974 35 H 0.105 0.895 36 H 0.009 0.991 37 H 0.008 0.992 38 H 0.008 0.992 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.101 -4.038 15.061 19.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.279 5.279 3 C -0.119 4.119 4 C -0.084 4.084 5 C -0.034 4.034 6 H 0.107 0.893 7 C -0.169 4.169 8 C -0.156 4.156 9 C -0.095 4.095 10 N -0.256 5.256 11 C -0.047 4.047 12 C -0.046 4.046 13 C -0.557 4.557 14 H 0.051 0.949 15 C -0.191 4.191 16 N -0.593 5.593 17 Si 0.773 3.227 18 H -0.194 1.194 19 H -0.208 1.208 20 H -0.177 1.177 21 H 0.055 0.945 22 H 0.085 0.915 23 H 0.090 0.910 24 H 0.067 0.933 25 H 0.087 0.913 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.116 0.884 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.044 0.956 35 H 0.122 0.878 36 H 0.027 0.973 37 H 0.026 0.974 38 H 0.027 0.973 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.214 -4.406 14.152 18.586 hybrid contribution 1.032 0.529 0.387 1.223 sum -10.182 -3.877 14.539 18.168 Atomic orbital electron populations 1.22415 0.86367 1.02609 1.00758 1.62296 1.09087 1.13792 1.42714 1.22295 1.00027 0.88732 1.00886 1.22540 0.99657 0.94477 0.91768 1.22596 0.99852 0.91801 0.89199 0.89295 1.22813 1.01595 0.95520 0.96941 1.22672 1.01233 0.97367 0.94369 1.23088 0.94585 0.94593 0.97255 1.63751 1.29557 1.10483 1.21803 1.22379 0.95541 0.93065 0.93736 1.19619 0.94494 0.95370 0.95138 1.21382 1.25553 0.94145 1.14628 0.94901 1.25942 0.95002 1.02058 0.96141 1.70070 1.31191 1.35050 1.22975 0.85677 0.77488 0.80324 0.79243 1.19354 1.20782 1.17673 0.94522 0.91497 0.91003 0.93330 0.91266 0.94229 0.92336 0.92747 0.91558 0.88447 0.89866 0.89651 0.91825 0.95554 0.87768 0.97326 0.97393 0.97340 0.92632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 9.33 127.69 1.19 1.81 16 2 N -0.56 -16.52 1.80 -948.86 -1.70 -18.22 16 3 C 0.03 0.81 9.57 127.69 1.22 2.03 16 4 C 0.04 1.20 3.53 86.30 0.30 1.51 16 5 C 0.07 1.99 3.36 45.26 0.15 2.14 16 6 H 0.09 2.25 6.45 -2.39 -0.02 2.23 16 7 C -0.13 -2.75 6.47 31.77 0.21 -2.55 16 8 C -0.12 -2.70 7.08 31.98 0.23 -2.47 16 9 C 0.03 1.07 5.31 86.77 0.46 1.53 16 10 N -0.53 -18.82 5.30 -860.55 -4.56 -23.38 16 11 C 0.08 3.47 3.57 86.30 0.31 3.78 16 12 C -0.01 -0.43 3.75 29.85 0.11 -0.32 16 13 C -0.52 -31.54 9.66 25.60 0.25 -31.29 16 14 H 0.03 2.18 7.99 -2.91 -0.02 2.16 16 15 C 0.00 0.29 5.47 84.65 0.46 0.76 16 16 N -0.95 -61.62 13.96 21.45 0.30 -61.32 16 17 Si 0.95 46.94 27.47 68.60 1.88 48.82 16 18 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 19 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 20 H -0.25 -11.86 6.54 99.48 0.65 -11.21 16 21 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 22 H 0.07 1.56 8.12 -2.39 -0.02 1.54 16 23 H 0.07 1.70 6.42 -2.38 -0.02 1.69 16 24 H 0.05 1.58 8.12 -2.39 -0.02 1.56 16 25 H 0.07 1.91 8.12 -2.39 -0.02 1.89 16 26 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.06 1.86 6.26 -2.39 -0.01 1.85 16 28 H 0.05 1.23 8.12 -2.39 -0.02 1.21 16 29 H 0.07 1.41 7.85 -2.39 -0.02 1.39 16 30 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 34 H 0.03 0.95 7.14 -2.39 -0.02 0.94 16 35 H 0.10 4.74 5.75 -2.39 -0.01 4.73 16 36 H 0.01 0.39 5.88 -2.38 -0.01 0.38 16 37 H 0.01 0.40 5.63 -2.39 -0.01 0.39 16 38 H 0.01 0.43 7.57 -2.39 -0.02 0.41 16 39 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 Total: -1.00 -68.83 292.95 1.75 -67.08 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: 0.94 Total: 10.08 kcal Atomic # 6 Polarization: -27.95 SS G_CDS: 4.89 Total: -23.06 kcal Atomic # 7 Polarization: -96.95 SS G_CDS: -5.97 Total: -102.92 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 1.88 Total: 48.82 kcal Total: -68.83 1.75 -67.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061644159.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.709 kcal (2) G-P(sol) polarization free energy of solvation -68.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds