Wall clock time and date at job start Mon Mar 30 2020 03:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46900 * 111.00293 * 2 1 4 4 C 1.53003 * 109.47122 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46771 * 185.42585 * 4 3 2 6 6 H 1.09004 * 109.45244 * 56.13383 * 5 4 3 7 7 C 1.53038 * 109.46627 * 296.15401 * 5 4 3 8 8 C 1.53112 * 109.27761 * 180.80562 * 7 5 4 9 9 C 1.53119 * 109.16304 * 57.66017 * 8 7 5 10 10 C 1.53038 * 109.27457 * 302.34180 * 9 8 7 11 11 N 1.46849 * 109.52343 * 59.17961 * 10 9 8 12 12 C 1.46902 * 110.99890 * 174.16309 * 11 10 9 13 13 C 1.50692 * 109.47544 * 67.04136 * 12 11 10 14 14 H 1.08006 * 120.00192 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00306 * 179.72290 * 13 12 11 16 16 N 1.31512 * 119.99602 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00133 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47142 * 90.00143 * 17 15 13 19 19 H 1.48500 * 109.47285 * 210.00245 * 17 15 13 20 20 H 1.48497 * 109.47048 * 330.00072 * 17 15 13 21 21 H 1.08997 * 109.47875 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47371 * 300.00379 * 1 2 3 23 23 H 1.09003 * 109.47095 * 59.99504 * 1 2 3 24 24 H 1.00900 * 111.00102 * 123.95084 * 2 1 3 25 25 H 1.08998 * 109.47357 * 59.99811 * 3 2 1 26 26 H 1.09007 * 109.46871 * 299.99738 * 3 2 1 27 27 H 1.09000 * 109.47488 * 65.42593 * 4 3 2 28 28 H 1.08996 * 109.47042 * 305.42346 * 4 3 2 29 29 H 1.09000 * 109.49849 * 60.86548 * 7 5 4 30 30 H 1.08995 * 109.53457 * 300.76836 * 7 5 4 31 31 H 1.09001 * 109.52637 * 297.75141 * 8 7 5 32 32 H 1.09001 * 109.52012 * 177.56085 * 8 7 5 33 33 H 1.09003 * 109.50543 * 182.40475 * 9 8 7 34 34 H 1.09000 * 109.53599 * 62.29528 * 9 8 7 35 35 H 1.09003 * 109.46433 * 299.16117 * 10 9 8 36 36 H 1.08995 * 109.46516 * 179.19539 * 10 9 8 37 37 H 1.08998 * 109.46949 * 307.03863 * 12 11 10 38 38 H 1.09002 * 109.46951 * 187.04442 * 12 11 10 39 39 H 0.97008 * 119.99993 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5249 1.3305 -0.0006 5 6 4.0731 2.7524 0.1358 6 1 3.6666 3.2134 1.0360 7 6 3.6648 3.5760 -1.0878 8 6 4.2324 4.9919 -0.9564 9 6 5.7547 4.9118 -0.8124 10 6 6.1025 4.0495 0.4031 11 7 5.5379 2.7052 0.2289 12 6 5.9680 1.8093 1.3108 13 6 5.3594 2.2647 2.6120 14 1 4.7170 3.1327 2.6332 15 6 5.6177 1.5698 3.7745 16 7 6.3956 0.5097 3.7477 17 14 4.8627 2.1339 5.3873 18 1 3.5475 1.4710 5.5768 19 1 5.7655 1.7725 6.5096 20 1 4.6751 3.6067 5.3576 21 1 -0.3635 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8306 -0.5261 0.7814 25 1 1.6460 1.8948 0.8899 26 1 1.6460 1.8947 -0.8901 27 1 3.8764 0.8937 -0.9354 28 1 3.8726 0.7252 0.8365 29 1 2.5775 3.6239 -1.1478 30 1 4.0588 3.1082 -1.9900 31 1 3.8081 5.4743 -0.0758 32 1 3.9806 5.5692 -1.8460 33 1 6.1606 5.9142 -0.6757 34 1 6.1827 4.4651 -1.7098 35 1 5.6865 4.5045 1.3021 36 1 7.1858 3.9787 0.5002 37 1 7.0548 1.8316 1.3905 38 1 5.6405 0.7928 1.0926 39 1 6.5776 0.0209 4.5657 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069731263.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:18 Heat of formation + Delta-G solvation = -14.586842 kcal Electronic energy + Delta-G solvation = -16697.963584 eV Core-core repulsion = 14253.480506 eV Total energy + Delta-G solvation = -2444.483078 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.70436 -35.93109 -33.64445 -32.16213 -31.63303 -28.15431 -26.65831 -24.66263 -23.57739 -22.57355 -21.18829 -20.11946 -18.90775 -16.20944 -15.78575 -15.23847 -14.63225 -14.32122 -14.06352 -13.87852 -13.42900 -13.35763 -12.99872 -12.56685 -12.28119 -11.73670 -11.70134 -11.28407 -11.07840 -10.98356 -10.89582 -10.62410 -10.44069 -10.36045 -10.22647 -9.82303 -9.70235 -9.61994 -9.16976 -8.41094 -8.22093 -7.09053 -6.01564 -4.10651 3.24610 3.32388 3.34981 4.39597 4.48567 5.01834 5.27890 5.32259 5.41025 5.41969 5.47679 5.54315 5.69791 5.81552 5.89728 5.93361 6.05719 6.09919 6.14066 6.20337 6.37461 6.41520 6.44300 6.54229 6.65994 6.73828 6.86829 7.00205 7.08300 7.29179 7.36034 7.57154 7.59795 7.92801 8.13835 8.33113 8.40488 9.00582 9.55804 11.02661 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.015679 B = 0.011417 C = 0.007606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.445066 B = 2451.896677 C = 3680.545671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.697 5.697 3 C 0.061 3.939 4 C -0.108 4.108 5 C 0.099 3.901 6 H 0.042 0.958 7 C -0.113 4.113 8 C -0.118 4.118 9 C -0.117 4.117 10 C 0.064 3.936 11 N -0.537 5.537 12 C 0.184 3.816 13 C -0.544 4.544 14 H 0.055 0.945 15 C 0.065 3.935 16 N -0.890 5.890 17 Si 0.884 3.116 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.276 1.276 21 H 0.063 0.937 22 H 0.018 0.982 23 H 0.060 0.940 24 H 0.344 0.656 25 H 0.026 0.974 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.034 0.966 36 H 0.063 0.937 37 H 0.027 0.973 38 H 0.038 0.962 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.330 4.110 -7.449 11.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.328 5.328 3 C -0.068 4.068 4 C -0.146 4.146 5 C -0.011 4.011 6 H 0.060 0.940 7 C -0.151 4.151 8 C -0.156 4.156 9 C -0.155 4.155 10 C -0.065 4.065 11 N -0.261 5.261 12 C 0.059 3.941 13 C -0.584 4.584 14 H 0.073 0.927 15 C -0.137 4.137 16 N -0.528 5.528 17 Si 0.712 3.288 18 H -0.208 1.208 19 H -0.211 1.211 20 H -0.201 1.201 21 H 0.081 0.919 22 H 0.036 0.964 23 H 0.079 0.921 24 H 0.162 0.838 25 H 0.044 0.956 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.101 0.899 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.052 0.948 36 H 0.081 0.919 37 H 0.045 0.955 38 H 0.056 0.944 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.014 3.707 -8.464 11.601 hybrid contribution -0.922 0.881 2.833 3.106 sum -7.936 4.589 -5.631 10.759 Atomic orbital electron populations 1.22156 0.88713 1.01303 0.99975 1.60434 1.06935 1.15105 1.50279 1.22035 0.96399 0.88649 0.99717 1.21577 0.92303 0.97417 1.03338 1.21287 0.89610 0.94492 0.95667 0.93990 1.21718 0.98944 0.95142 0.99333 1.21543 0.96378 0.97112 1.00523 1.21621 0.95536 0.98718 0.99580 1.21837 0.99215 0.89989 0.95411 1.62413 1.07289 1.09257 1.47166 1.19799 0.96004 0.92335 0.85998 1.21737 1.30015 1.12751 0.93849 0.92727 1.24939 0.95061 0.94905 0.98800 1.69943 1.36725 1.18148 1.28014 0.86720 0.79153 0.79001 0.83891 1.20764 1.21140 1.20078 0.91853 0.96392 0.92128 0.83803 0.95572 0.91629 0.91720 0.89885 0.92711 0.91777 0.92774 0.92958 0.92812 0.91881 0.94814 0.91895 0.95477 0.94438 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.70 60.06 0.64 0.99 16 2 N -0.70 -10.54 6.86 -121.13 -0.83 -11.37 16 3 C 0.06 0.99 5.27 -3.82 -0.02 0.97 16 4 C -0.11 -2.02 4.65 -26.73 -0.12 -2.15 16 5 C 0.10 1.91 1.46 -67.72 -0.10 1.81 16 6 H 0.04 0.91 6.52 -51.93 -0.34 0.57 16 7 C -0.11 -1.81 5.08 -26.65 -0.14 -1.94 16 8 C -0.12 -1.76 6.00 -26.61 -0.16 -1.92 16 9 C -0.12 -1.84 6.09 -26.65 -0.16 -2.01 16 10 C 0.06 1.26 5.15 -3.83 -0.02 1.24 16 11 N -0.54 -11.50 4.69 -228.12 -1.07 -12.57 16 12 C 0.18 4.68 4.57 -4.98 -0.02 4.66 16 13 C -0.54 -14.69 7.56 -34.44 -0.26 -14.95 16 14 H 0.05 1.48 5.84 -52.48 -0.31 1.18 16 15 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 16 N -0.89 -25.84 13.29 55.43 0.74 -25.11 16 17 Si 0.88 21.33 29.54 -169.99 -5.02 16.31 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 22 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.34 5.27 8.82 -39.29 -0.35 4.93 16 25 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.98 6.83 -51.93 -0.35 0.62 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.08 1.81 6.02 -51.93 -0.31 1.50 16 29 H 0.05 0.79 6.70 -51.93 -0.35 0.44 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.03 0.72 7.10 -51.93 -0.37 0.35 16 36 H 0.06 1.25 8.05 -51.93 -0.42 0.83 16 37 H 0.03 0.75 8.04 -51.93 -0.42 0.33 16 38 H 0.04 1.01 6.30 -51.93 -0.33 0.69 16 39 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 297.63 15.07 4.49 4.49 Total: -1.00 -28.15 297.63 -9.06 -37.21 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -6.90 Total: 2.63 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -0.46 Total: -11.58 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: -1.16 Total: -49.05 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.15 -9.06 -37.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069731263.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.624 kcal (2) G-P(sol) polarization free energy of solvation -28.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds