Wall clock time and date at job start Mon Mar 30 2020 03:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46896 * 111.00476 * 2 1 4 4 C 1.52993 * 109.47337 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47354 * 184.07448 * 4 3 2 6 6 H 1.09000 * 109.45067 * 302.16270 * 5 4 3 7 7 C 1.53034 * 109.46140 * 62.13035 * 5 4 3 8 8 C 1.53121 * 109.28088 * 179.19919 * 7 5 4 9 9 C 1.53126 * 109.15717 * 302.34710 * 8 7 5 10 10 C 1.53035 * 109.27975 * 57.65088 * 9 8 7 11 11 N 1.46843 * 109.52530 * 300.82267 * 10 9 8 12 12 C 1.46899 * 110.99877 * 185.83562 * 11 10 9 13 13 C 1.50698 * 109.46979 * 64.56078 * 12 11 10 14 14 H 1.08000 * 120.00265 * 359.97438 * 13 12 11 15 15 C 1.37881 * 120.00234 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99589 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00140 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47376 * 89.99767 * 17 15 13 19 19 H 1.48504 * 109.47352 * 210.00027 * 17 15 13 20 20 H 1.48500 * 109.47204 * 329.99595 * 17 15 13 21 21 H 1.08997 * 109.46897 * 59.99605 * 1 2 3 22 22 H 1.08993 * 109.47556 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47109 * 300.00317 * 1 2 3 24 24 H 1.00905 * 110.99889 * 123.95924 * 2 1 3 25 25 H 1.09009 * 109.46920 * 60.00172 * 3 2 1 26 26 H 1.08998 * 109.47369 * 300.00727 * 3 2 1 27 27 H 1.08999 * 109.46916 * 64.08020 * 4 3 2 28 28 H 1.09001 * 109.47794 * 304.07804 * 4 3 2 29 29 H 1.08997 * 109.50438 * 59.25446 * 7 5 4 30 30 H 1.09005 * 109.50339 * 299.13618 * 7 5 4 31 31 H 1.08998 * 109.52583 * 182.44408 * 8 7 5 32 32 H 1.09000 * 109.57398 * 62.28085 * 8 7 5 33 33 H 1.09000 * 109.49995 * 297.71119 * 9 8 7 34 34 H 1.08999 * 109.50132 * 177.59699 * 9 8 7 35 35 H 1.08994 * 109.46353 * 180.80224 * 10 9 8 36 36 H 1.09005 * 109.45899 * 60.83858 * 10 9 8 37 37 H 1.09005 * 109.46881 * 184.55555 * 12 11 10 38 38 H 1.08993 * 109.47353 * 304.55789 * 12 11 10 39 39 H 0.97002 * 119.99763 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5249 1.3305 0.0006 5 6 4.0732 2.7552 0.1031 6 1 3.6945 3.3505 -0.7277 7 6 3.6233 3.3808 1.4253 8 6 4.1907 4.7989 1.5326 9 6 5.7171 4.7387 1.4271 10 6 6.1063 4.0738 0.1049 11 7 5.5403 2.7199 0.0511 12 6 6.0076 2.0009 -1.1417 13 6 7.4981 1.7970 -1.0535 14 1 8.0438 2.1651 -0.1972 15 6 8.1653 1.1406 -2.0659 16 7 7.5007 0.6919 -3.1083 17 14 10.0129 0.8885 -1.9569 18 1 10.2975 -0.3981 -1.2722 19 1 10.5902 0.8595 -3.3249 20 1 10.6201 2.0038 -1.1871 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.8306 -0.5262 0.7814 25 1 1.6460 1.8947 0.8901 26 1 1.6460 1.8948 -0.8899 27 1 3.8764 0.8716 -0.9234 28 1 3.8725 0.7453 0.8520 29 1 3.9898 2.7783 2.2564 30 1 2.5344 3.4212 1.4569 31 1 3.9087 5.2325 2.4921 32 1 3.7936 5.4132 0.7245 33 1 6.1167 4.1576 2.2582 34 1 6.1242 5.7493 1.4600 35 1 7.1924 4.0165 0.0330 36 1 5.7182 4.6630 -0.7260 37 1 5.5112 1.0322 -1.1997 38 1 5.7726 2.5835 -2.0324 39 1 7.9700 0.2297 -3.8205 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069731264.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:21 Heat of formation + Delta-G solvation = -11.444388 kcal Electronic energy + Delta-G solvation = -16377.471791 eV Core-core repulsion = 13933.124980 eV Total energy + Delta-G solvation = -2444.346810 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.75344 -36.09641 -33.57010 -32.39982 -31.62941 -28.24190 -26.85644 -24.74811 -23.74103 -22.54897 -21.09953 -20.23789 -18.98018 -16.31893 -15.86870 -15.33321 -14.76529 -14.41627 -13.95110 -13.81917 -13.71469 -13.41601 -13.10144 -12.57706 -12.33465 -11.92856 -11.81735 -11.44299 -11.15808 -11.03802 -10.81950 -10.75845 -10.65736 -10.33789 -10.24160 -10.00341 -9.85342 -9.28866 -9.05119 -8.36387 -8.30875 -7.12938 -5.97011 -3.97717 3.35413 3.41209 3.44579 4.30739 4.47286 4.90722 5.20119 5.25493 5.30666 5.37712 5.38173 5.41400 5.51425 5.67685 5.72528 5.84126 5.90106 5.95453 5.98872 6.09972 6.15545 6.32268 6.33481 6.43614 6.52702 6.67760 6.78449 6.84330 6.87694 7.12243 7.42975 7.44673 7.46189 7.87037 8.19238 8.31189 8.64941 9.09926 9.65840 11.13792 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.021617 B = 0.007868 C = 0.006002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.941143 B = 3557.827869 C = 4663.683627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.695 5.695 3 C 0.060 3.940 4 C -0.114 4.114 5 C 0.089 3.911 6 H 0.026 0.974 7 C -0.111 4.111 8 C -0.118 4.118 9 C -0.117 4.117 10 C 0.065 3.935 11 N -0.531 5.531 12 C 0.188 3.812 13 C -0.506 4.506 14 H 0.062 0.938 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.896 3.104 18 H -0.281 1.281 19 H -0.288 1.288 20 H -0.274 1.274 21 H 0.062 0.938 22 H 0.064 0.936 23 H 0.017 0.983 24 H 0.341 0.659 25 H 0.029 0.971 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.083 0.917 36 H 0.016 0.984 37 H 0.041 0.959 38 H -0.013 1.013 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.462 4.038 8.060 13.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.326 5.326 3 C -0.070 4.070 4 C -0.152 4.152 5 C -0.021 4.021 6 H 0.044 0.956 7 C -0.149 4.149 8 C -0.156 4.156 9 C -0.155 4.155 10 C -0.063 4.063 11 N -0.256 5.256 12 C 0.063 3.937 13 C -0.545 4.545 14 H 0.080 0.920 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.724 3.276 18 H -0.207 1.207 19 H -0.214 1.214 20 H -0.199 1.199 21 H 0.081 0.919 22 H 0.083 0.917 23 H 0.035 0.965 24 H 0.159 0.841 25 H 0.047 0.953 26 H 0.085 0.915 27 H 0.102 0.898 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.034 0.966 37 H 0.059 0.941 38 H 0.005 0.995 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.224 3.622 7.602 13.246 hybrid contribution 0.493 0.528 0.079 0.727 sum -9.731 4.150 7.681 13.074 Atomic orbital electron populations 1.22166 0.88377 1.01482 1.00059 1.60341 1.07134 1.14967 1.50149 1.22083 0.96096 0.88765 1.00024 1.21686 0.92446 0.96918 1.04105 1.21435 0.90305 0.94944 0.95421 0.95579 1.21682 0.98755 0.95982 0.98452 1.21559 0.96582 0.96941 1.00509 1.21632 0.95114 0.99481 0.99310 1.21924 1.01046 0.89051 0.94306 1.62029 1.04367 1.15214 1.44022 1.19825 0.95832 0.93557 0.84513 1.21179 0.92363 1.36099 1.04854 0.91990 1.24982 0.98429 0.95846 0.95368 1.69964 1.35729 1.38900 1.09137 0.86529 0.85419 0.78567 0.77062 1.20672 1.21394 1.19943 0.91917 0.91703 0.96465 0.84127 0.95313 0.91504 0.89768 0.91542 0.91534 0.92610 0.92815 0.92839 0.91568 0.92668 0.89879 0.96554 0.94084 0.99519 0.92999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.70 60.06 0.64 0.96 16 2 N -0.70 -9.47 6.86 -121.14 -0.83 -10.30 16 3 C 0.06 0.86 5.49 -3.83 -0.02 0.84 16 4 C -0.11 -1.99 4.65 -26.73 -0.12 -2.11 16 5 C 0.09 1.62 1.95 -67.72 -0.13 1.48 16 6 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 7 C -0.11 -1.66 5.05 -26.65 -0.13 -1.80 16 8 C -0.12 -1.68 6.00 -26.60 -0.16 -1.84 16 9 C -0.12 -1.87 6.09 -26.65 -0.16 -2.03 16 10 C 0.07 1.30 5.29 -3.84 -0.02 1.28 16 11 N -0.53 -11.56 4.49 -228.13 -1.02 -12.59 16 12 C 0.19 4.93 4.42 -4.98 -0.02 4.91 16 13 C -0.51 -14.35 8.42 -34.44 -0.29 -14.64 16 14 H 0.06 1.74 7.03 -52.49 -0.37 1.37 16 15 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 16 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 17 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 21 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 24 H 0.34 4.26 8.82 -39.29 -0.35 3.92 16 25 H 0.03 0.38 6.30 -51.92 -0.33 0.05 16 26 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.08 1.74 6.01 -51.93 -0.31 1.43 16 28 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 0.73 6.44 -51.93 -0.33 0.40 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 1.80 6.61 -51.93 -0.34 1.46 16 36 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.04 1.14 5.67 -51.93 -0.29 0.85 16 38 H -0.01 -0.37 8.13 -51.93 -0.42 -0.79 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 LS Contribution 300.03 15.07 4.52 4.52 Total: -1.00 -29.83 300.03 -9.10 -38.93 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -6.96 Total: 0.30 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -0.52 Total: -11.47 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: -1.12 Total: -49.14 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.83 -9.10 -38.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069731264.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.483 kcal (2) G-P(sol) polarization free energy of solvation -29.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds