Wall clock time and date at job start Mon Mar 30 2020 03:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46896 * 111.00476 * 2 1 4 4 C 1.52993 * 109.47337 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47354 * 184.07448 * 4 3 2 6 6 H 1.09000 * 109.45067 * 302.16270 * 5 4 3 7 7 C 1.53034 * 109.46140 * 62.13035 * 5 4 3 8 8 C 1.53121 * 109.28088 * 179.19919 * 7 5 4 9 9 C 1.53126 * 109.15717 * 302.34710 * 8 7 5 10 10 C 1.53035 * 109.27975 * 57.65088 * 9 8 7 11 11 N 1.46843 * 109.52530 * 300.82267 * 10 9 8 12 12 C 1.46899 * 110.99877 * 185.83562 * 11 10 9 13 13 C 1.50698 * 109.46979 * 64.56078 * 12 11 10 14 14 H 1.08000 * 120.00265 * 359.97438 * 13 12 11 15 15 C 1.37881 * 120.00234 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99589 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00140 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47376 * 89.99767 * 17 15 13 19 19 H 1.48504 * 109.47352 * 210.00027 * 17 15 13 20 20 H 1.48500 * 109.47204 * 329.99595 * 17 15 13 21 21 H 1.08997 * 109.46897 * 59.99605 * 1 2 3 22 22 H 1.08993 * 109.47556 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47109 * 300.00317 * 1 2 3 24 24 H 1.00905 * 110.99889 * 123.95924 * 2 1 3 25 25 H 1.09009 * 109.46920 * 60.00172 * 3 2 1 26 26 H 1.08998 * 109.47369 * 300.00727 * 3 2 1 27 27 H 1.08999 * 109.46916 * 64.08020 * 4 3 2 28 28 H 1.09001 * 109.47794 * 304.07804 * 4 3 2 29 29 H 1.08997 * 109.50438 * 59.25446 * 7 5 4 30 30 H 1.09005 * 109.50339 * 299.13618 * 7 5 4 31 31 H 1.08998 * 109.52583 * 182.44408 * 8 7 5 32 32 H 1.09000 * 109.57398 * 62.28085 * 8 7 5 33 33 H 1.09000 * 109.49995 * 297.71119 * 9 8 7 34 34 H 1.08999 * 109.50132 * 177.59699 * 9 8 7 35 35 H 1.08994 * 109.46353 * 180.80224 * 10 9 8 36 36 H 1.09005 * 109.45899 * 60.83858 * 10 9 8 37 37 H 1.09005 * 109.46881 * 184.55555 * 12 11 10 38 38 H 1.08993 * 109.47353 * 304.55789 * 12 11 10 39 39 H 0.97002 * 119.99763 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5249 1.3305 0.0006 5 6 4.0732 2.7552 0.1031 6 1 3.6945 3.3505 -0.7277 7 6 3.6233 3.3808 1.4253 8 6 4.1907 4.7989 1.5326 9 6 5.7171 4.7387 1.4271 10 6 6.1063 4.0738 0.1049 11 7 5.5403 2.7199 0.0511 12 6 6.0076 2.0009 -1.1417 13 6 7.4981 1.7970 -1.0535 14 1 8.0438 2.1651 -0.1972 15 6 8.1653 1.1406 -2.0659 16 7 7.5007 0.6919 -3.1083 17 14 10.0129 0.8885 -1.9569 18 1 10.2975 -0.3981 -1.2722 19 1 10.5902 0.8595 -3.3249 20 1 10.6201 2.0038 -1.1871 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.8306 -0.5262 0.7814 25 1 1.6460 1.8947 0.8901 26 1 1.6460 1.8948 -0.8899 27 1 3.8764 0.8716 -0.9234 28 1 3.8725 0.7453 0.8520 29 1 3.9898 2.7783 2.2564 30 1 2.5344 3.4212 1.4569 31 1 3.9087 5.2325 2.4921 32 1 3.7936 5.4132 0.7245 33 1 6.1167 4.1576 2.2582 34 1 6.1242 5.7493 1.4600 35 1 7.1924 4.0165 0.0330 36 1 5.7182 4.6630 -0.7260 37 1 5.5112 1.0322 -1.1997 38 1 5.7726 2.5835 -2.0324 39 1 7.9700 0.2297 -3.8205 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069731264.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:21 Heat of formation + Delta-G solvation = -32.702753 kcal Electronic energy + Delta-G solvation = -16378.393623 eV Core-core repulsion = 13933.124980 eV Total energy + Delta-G solvation = -2445.268642 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.26479 -37.25813 -35.44542 -33.88933 -33.35303 -29.51368 -28.85254 -25.92666 -25.46731 -23.85279 -22.77203 -21.63185 -20.45903 -18.47931 -17.11113 -16.92328 -16.22599 -16.09983 -15.31811 -15.15527 -15.04155 -14.87433 -14.50099 -14.06820 -13.95569 -13.41891 -13.27406 -12.92381 -12.71139 -12.55808 -12.49821 -12.33227 -12.13425 -11.97548 -11.76058 -11.56137 -11.41629 -11.00639 -10.82394 -10.53559 -9.34826 -8.95999 -8.19022 -6.28922 1.40083 1.42160 1.52942 2.40550 3.10718 3.15136 3.45831 3.91047 3.99467 4.09935 4.12942 4.33272 4.37845 4.48233 4.53770 4.60596 4.66120 4.68987 4.71474 4.89283 5.00134 5.02203 5.06311 5.11973 5.14258 5.22933 5.29175 5.32259 5.38983 5.44024 5.56167 5.68265 6.07080 6.10064 6.41122 6.46862 6.73497 6.88288 7.40371 8.92120 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.021617 B = 0.007868 C = 0.006002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.941143 B = 3557.827869 C = 4663.683627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.716 5.716 3 C 0.073 3.927 4 C -0.104 4.104 5 C 0.084 3.916 6 H 0.013 0.987 7 C -0.103 4.103 8 C -0.115 4.115 9 C -0.109 4.109 10 C 0.062 3.938 11 N -0.537 5.537 12 C 0.204 3.796 13 C -0.523 4.523 14 H 0.061 0.939 15 C 0.000 4.000 16 N -0.935 5.935 17 Si 0.970 3.030 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.264 1.264 21 H 0.060 0.940 22 H 0.077 0.923 23 H 0.033 0.967 24 H 0.347 0.653 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.039 0.961 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.006 0.994 37 H 0.019 0.981 38 H -0.052 1.052 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.016 4.871 10.125 15.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.348 5.348 3 C -0.057 4.057 4 C -0.143 4.143 5 C -0.025 4.025 6 H 0.031 0.969 7 C -0.140 4.140 8 C -0.153 4.153 9 C -0.147 4.147 10 C -0.066 4.066 11 N -0.261 5.261 12 C 0.078 3.922 13 C -0.561 4.561 14 H 0.080 0.920 15 C -0.198 4.198 16 N -0.575 5.575 17 Si 0.794 3.206 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.188 1.188 21 H 0.079 0.921 22 H 0.096 0.904 23 H 0.051 0.949 24 H 0.165 0.835 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.024 0.976 37 H 0.037 0.963 38 H -0.034 1.034 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.797 4.466 9.691 15.180 hybrid contribution 0.620 0.260 -0.591 0.895 sum -10.178 4.726 9.100 14.447 Atomic orbital electron populations 1.22216 0.86432 1.02624 1.00681 1.60298 1.09075 1.14510 1.50901 1.21890 0.93316 0.89699 1.00783 1.21544 0.95068 0.96127 1.01528 1.21613 0.87902 0.95556 0.97405 0.96859 1.21651 1.00482 0.96249 0.95645 1.21578 0.94782 0.96436 1.02496 1.21585 0.96899 1.00114 0.96083 1.21979 0.99491 0.88289 0.96850 1.62003 1.06950 1.16145 1.41035 1.19447 0.95166 0.92536 0.85033 1.21490 0.93443 1.36206 1.05002 0.92036 1.25934 1.03751 0.95303 0.94804 1.70105 1.37907 1.39577 1.09950 0.85380 0.78960 0.78895 0.77361 1.19785 1.20793 1.18827 0.92121 0.90400 0.94877 0.83504 0.92895 0.92132 0.94196 0.91855 0.91461 0.89775 0.89409 0.92548 0.91626 0.90269 0.92373 0.97605 0.96323 1.03395 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.70 127.69 1.37 1.95 16 2 N -0.72 -18.83 6.86 -537.18 -3.68 -22.51 16 3 C 0.07 2.02 5.49 86.30 0.47 2.49 16 4 C -0.10 -3.75 4.65 30.59 0.14 -3.61 16 5 C 0.08 3.10 1.95 44.94 0.09 3.18 16 6 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 7 C -0.10 -2.80 5.05 30.65 0.15 -2.65 16 8 C -0.12 -2.88 6.00 30.68 0.18 -2.70 16 9 C -0.11 -3.23 6.09 30.65 0.19 -3.05 16 10 C 0.06 2.52 5.29 86.33 0.46 2.98 16 11 N -0.54 -24.08 4.49 -875.67 -3.93 -28.01 16 12 C 0.20 11.39 4.42 85.56 0.38 11.77 16 13 C -0.52 -30.71 8.42 25.60 0.22 -30.49 16 14 H 0.06 3.54 7.03 -2.91 -0.02 3.52 16 15 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 16 N -0.93 -58.13 13.29 21.45 0.28 -57.85 16 17 Si 0.97 45.46 29.54 68.60 2.03 47.49 16 18 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 19 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 20 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 21 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 22 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 24 H 0.35 8.32 8.82 -89.69 -0.79 7.53 16 25 H 0.05 1.23 6.30 -2.38 -0.02 1.21 16 26 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.04 1.77 6.01 -2.39 -0.01 1.75 16 28 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.08 1.86 6.44 -2.38 -0.02 1.85 16 31 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.06 2.60 6.61 -2.39 -0.02 2.58 16 36 H 0.01 0.24 8.14 -2.38 -0.02 0.22 16 37 H 0.02 1.12 5.67 -2.38 -0.01 1.11 16 38 H -0.05 -3.19 8.13 -2.39 -0.02 -3.21 16 39 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -67.03 300.03 -0.99 -68.01 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 0.21 Total: 12.54 kcal Atomic # 6 Polarization: -23.77 SS G_CDS: 4.11 Total: -19.66 kcal Atomic # 7 Polarization: -101.04 SS G_CDS: -7.33 Total: -108.37 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -67.03 -0.99 -68.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069731264.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.309 kcal (2) G-P(sol) polarization free energy of solvation -67.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds