Wall clock time and date at job start Mon Mar 30 2020 03:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46900 * 110.99641 * 2 1 4 4 C 1.53001 * 109.47084 * 179.97438 * 3 2 1 5 5 H 1.08997 * 110.88033 * 57.38972 * 4 3 2 6 6 C 1.55135 * 110.98956 * 293.54214 * 4 3 2 7 7 C 1.54322 * 103.02006 * 206.21948 * 6 4 3 8 8 N 1.47439 * 107.23490 * 22.28319 * 7 6 4 9 9 C 1.46901 * 110.99961 * 123.25626 * 8 7 6 10 10 C 1.53000 * 109.46769 * 69.87863 * 9 8 7 11 11 C 1.53001 * 109.46886 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47291 * 179.97438 * 11 10 9 13 13 H 1.08006 * 119.99920 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99563 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00432 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.46678 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47258 * 119.99423 * 16 14 12 19 19 H 1.48493 * 109.47346 * 240.00028 * 16 14 12 20 20 C 1.47853 * 108.56569 * 0.99003 * 8 7 6 21 21 H 1.08997 * 109.47544 * 300.00232 * 1 2 3 22 22 H 1.09003 * 109.47238 * 60.00947 * 1 2 3 23 23 H 1.09005 * 109.47003 * 180.02562 * 1 2 3 24 24 H 1.00903 * 110.99825 * 123.94694 * 2 1 3 25 25 H 1.08997 * 109.47721 * 59.99793 * 3 2 1 26 26 H 1.08999 * 109.46875 * 299.99742 * 3 2 1 27 27 H 1.09003 * 110.71015 * 87.83545 * 6 4 3 28 28 H 1.09004 * 110.85568 * 324.67209 * 6 4 3 29 29 H 1.09003 * 109.88473 * 262.87599 * 7 6 4 30 30 H 1.09003 * 110.01953 * 141.76715 * 7 6 4 31 31 H 1.09002 * 109.47401 * 309.87571 * 9 8 7 32 32 H 1.09001 * 109.46874 * 189.87583 * 9 8 7 33 33 H 1.09001 * 109.47194 * 299.99524 * 10 9 8 34 34 H 1.08992 * 109.47399 * 59.99697 * 10 9 8 35 35 H 1.09001 * 109.47109 * 299.99380 * 11 10 9 36 36 H 1.09002 * 109.47508 * 59.99571 * 11 10 9 37 37 H 0.97000 * 119.99425 * 180.02562 * 15 14 12 38 38 H 1.09002 * 110.36766 * 94.73414 * 20 8 7 39 39 H 1.08997 * 110.37443 * 217.07382 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 3.5248 1.3307 0.0006 5 1 3.8989 0.7716 -0.8570 6 6 4.0643 0.7378 1.3288 7 6 5.4656 1.3731 1.4493 8 7 5.4612 2.5992 0.6305 9 6 5.8229 3.7723 1.4374 10 6 7.3030 3.6936 1.8168 11 6 7.6796 4.9150 2.6577 12 6 9.1373 4.8373 3.0319 13 1 9.7352 4.0001 2.7032 14 6 9.7076 5.8348 3.7939 15 7 8.9796 6.8545 4.1937 16 14 11.5147 5.7387 4.2572 17 1 12.1066 4.5016 3.6874 18 1 12.2280 6.9237 3.7167 19 1 11.6460 5.7140 5.7361 20 6 4.1188 2.7611 0.0324 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5137 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 1.8305 -0.5260 0.7815 25 1 1.6458 1.8949 0.8899 26 1 1.6458 1.8947 -0.8900 27 1 4.1376 -0.3478 1.2647 28 1 3.4347 1.0312 2.1689 29 1 6.2200 0.6805 1.0759 30 1 5.6740 1.6226 2.4897 31 1 5.2162 3.7917 2.3428 32 1 5.6434 4.6795 0.8604 33 1 7.4824 2.7864 2.3938 34 1 7.9096 3.6742 0.9115 35 1 7.5001 5.8225 2.0811 36 1 7.0729 4.9340 3.5631 37 1 9.3810 7.5564 4.7295 38 1 3.5036 3.4138 0.6517 39 1 4.1994 3.1610 -0.9784 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070799531.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:00 Heat of formation + Delta-G solvation = -16.645063 kcal Electronic energy + Delta-G solvation = -15529.648935 eV Core-core repulsion = 13085.076606 eV Total energy + Delta-G solvation = -2444.572329 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.22659 -36.32792 -34.13252 -32.41213 -30.39252 -29.36516 -26.91550 -25.43817 -23.38407 -22.97124 -20.78011 -20.48594 -19.37785 -16.76012 -16.28521 -15.79571 -15.14285 -14.66843 -14.43633 -13.98609 -13.90754 -13.46837 -13.30185 -12.74996 -12.30738 -12.13166 -12.04473 -11.96651 -11.38980 -11.07307 -10.93088 -10.85766 -10.73998 -10.60286 -10.47720 -10.39554 -9.61432 -9.28576 -9.00611 -8.77095 -8.31601 -8.00991 -5.96829 -3.98523 3.33320 3.40541 3.45457 3.89125 4.23402 4.49510 4.55724 4.80299 4.86963 5.03852 5.14090 5.26258 5.32617 5.39054 5.41559 5.50513 5.56426 5.70572 5.73768 5.78078 5.84058 5.93994 6.09133 6.19654 6.30556 6.36884 6.67126 6.75197 6.83393 7.04540 7.16138 7.32428 7.46652 7.72745 7.87580 8.04207 8.48022 9.09051 9.65362 11.14754 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.076391 B = 0.003879 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 366.446659 B = 7217.313222 C = 7333.742100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.695 5.695 3 C 0.068 3.932 4 C -0.095 4.095 5 H 0.092 0.908 6 C -0.139 4.139 7 C 0.043 3.957 8 N -0.530 5.530 9 C 0.052 3.948 10 C -0.103 4.103 11 C 0.021 3.979 12 C -0.516 4.516 13 H 0.056 0.944 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.892 3.108 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.285 1.285 20 C 0.047 3.953 21 H 0.020 0.980 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.342 0.658 25 H 0.030 0.970 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.028 0.972 32 H 0.068 0.932 33 H 0.045 0.955 34 H 0.055 0.945 35 H 0.015 0.985 36 H 0.012 0.988 37 H 0.259 0.741 38 H 0.043 0.957 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.054 -11.993 -7.006 20.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.325 5.325 3 C -0.062 4.062 4 C -0.115 4.115 5 H 0.110 0.890 6 C -0.178 4.178 7 C -0.085 4.085 8 N -0.253 5.253 9 C -0.076 4.076 10 C -0.141 4.141 11 C -0.017 4.017 12 C -0.555 4.555 13 H 0.074 0.926 14 C -0.146 4.146 15 N -0.537 5.537 16 Si 0.720 3.280 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.081 4.081 21 H 0.039 0.961 22 H 0.083 0.917 23 H 0.085 0.915 24 H 0.159 0.841 25 H 0.048 0.952 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.047 0.953 32 H 0.086 0.914 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.034 0.966 36 H 0.031 0.969 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.622 -11.932 -7.981 20.490 hybrid contribution 0.164 0.491 1.962 2.029 sum -14.458 -11.441 -6.019 19.395 Atomic orbital electron populations 1.22194 0.87927 1.01799 1.00402 1.60401 1.07592 1.14469 1.50088 1.21947 0.94275 0.89365 1.00599 1.22331 0.93614 0.96739 0.98770 0.89014 1.22864 0.97209 1.00733 0.96968 1.22810 0.96128 0.92374 0.97202 1.63634 1.25517 1.03209 1.32988 1.22466 0.98633 0.91860 0.94611 1.21625 0.92049 1.00467 0.99986 1.19084 0.96177 0.92071 0.94324 1.21304 0.95422 1.06754 1.31994 0.92611 1.25039 0.97964 0.95474 0.96129 1.69983 1.35818 1.10654 1.37250 0.86540 0.85407 0.78001 0.78095 1.19702 1.21019 1.21084 1.23029 0.89360 0.95588 1.00153 0.96111 0.91698 0.91474 0.84073 0.95199 0.90788 0.90822 0.92061 0.90721 0.92274 0.95343 0.91395 0.93578 0.92617 0.96635 0.96921 0.93133 0.93889 0.90383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.70 60.06 0.64 0.84 16 2 N -0.69 -6.21 6.86 -121.13 -0.83 -7.05 16 3 C 0.07 0.64 5.19 -3.82 -0.02 0.62 16 4 C -0.10 -1.03 3.29 -88.48 -0.29 -1.32 16 5 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 6 C -0.14 -1.53 5.61 -24.91 -0.14 -1.67 16 7 C 0.04 0.60 6.21 -2.84 -0.02 0.58 16 8 N -0.53 -8.30 5.16 -231.24 -1.19 -9.50 16 9 C 0.05 0.94 4.54 -3.82 -0.02 0.92 16 10 C -0.10 -2.23 5.18 -26.73 -0.14 -2.37 16 11 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 12 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 13 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 14 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.90 -27.45 13.29 55.43 0.74 -26.72 16 16 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 17 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 C 0.05 0.61 6.15 -2.29 -0.01 0.59 16 21 H 0.02 0.15 8.14 -51.93 -0.42 -0.28 16 22 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.34 2.81 8.02 -39.29 -0.32 2.49 16 25 H 0.03 0.29 8.11 -51.93 -0.42 -0.13 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.71 8.11 -51.93 -0.42 0.29 16 28 H 0.06 0.66 8.02 -51.93 -0.42 0.25 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.06 0.89 6.91 -51.93 -0.36 0.54 16 31 H 0.03 0.52 7.96 -51.93 -0.41 0.10 16 32 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 33 H 0.05 0.98 7.14 -51.93 -0.37 0.61 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.04 0.55 7.71 -51.93 -0.40 0.15 16 39 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 310.09 15.07 4.67 4.67 Total: -1.00 -30.60 310.09 -9.48 -40.08 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -7.31 Total: -3.32 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -0.55 Total: -15.20 kcal Atomic # 7 Polarization: -41.97 SS G_CDS: -1.29 Total: -43.26 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.60 -9.48 -40.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070799531.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.438 kcal (2) G-P(sol) polarization free energy of solvation -30.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds