Wall clock time and date at job start Mon Mar 30 2020 03:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46900 * 110.99641 * 2 1 4 4 C 1.53001 * 109.47084 * 179.97438 * 3 2 1 5 5 H 1.08997 * 110.88033 * 57.38972 * 4 3 2 6 6 C 1.55135 * 110.98956 * 293.54214 * 4 3 2 7 7 C 1.54322 * 103.02006 * 206.21948 * 6 4 3 8 8 N 1.47439 * 107.23490 * 22.28319 * 7 6 4 9 9 C 1.46901 * 110.99961 * 123.25626 * 8 7 6 10 10 C 1.53000 * 109.46769 * 69.87863 * 9 8 7 11 11 C 1.53001 * 109.46886 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47291 * 179.97438 * 11 10 9 13 13 H 1.08006 * 119.99920 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99563 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00432 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.46678 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47258 * 119.99423 * 16 14 12 19 19 H 1.48493 * 109.47346 * 240.00028 * 16 14 12 20 20 C 1.47853 * 108.56569 * 0.99003 * 8 7 6 21 21 H 1.08997 * 109.47544 * 300.00232 * 1 2 3 22 22 H 1.09003 * 109.47238 * 60.00947 * 1 2 3 23 23 H 1.09005 * 109.47003 * 180.02562 * 1 2 3 24 24 H 1.00903 * 110.99825 * 123.94694 * 2 1 3 25 25 H 1.08997 * 109.47721 * 59.99793 * 3 2 1 26 26 H 1.08999 * 109.46875 * 299.99742 * 3 2 1 27 27 H 1.09003 * 110.71015 * 87.83545 * 6 4 3 28 28 H 1.09004 * 110.85568 * 324.67209 * 6 4 3 29 29 H 1.09003 * 109.88473 * 262.87599 * 7 6 4 30 30 H 1.09003 * 110.01953 * 141.76715 * 7 6 4 31 31 H 1.09002 * 109.47401 * 309.87571 * 9 8 7 32 32 H 1.09001 * 109.46874 * 189.87583 * 9 8 7 33 33 H 1.09001 * 109.47194 * 299.99524 * 10 9 8 34 34 H 1.08992 * 109.47399 * 59.99697 * 10 9 8 35 35 H 1.09001 * 109.47109 * 299.99380 * 11 10 9 36 36 H 1.09002 * 109.47508 * 59.99571 * 11 10 9 37 37 H 0.97000 * 119.99425 * 180.02562 * 15 14 12 38 38 H 1.09002 * 110.36766 * 94.73414 * 20 8 7 39 39 H 1.08997 * 110.37443 * 217.07382 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 3.5248 1.3307 0.0006 5 1 3.8989 0.7716 -0.8570 6 6 4.0643 0.7378 1.3288 7 6 5.4656 1.3731 1.4493 8 7 5.4612 2.5992 0.6305 9 6 5.8229 3.7723 1.4374 10 6 7.3030 3.6936 1.8168 11 6 7.6796 4.9150 2.6577 12 6 9.1373 4.8373 3.0319 13 1 9.7352 4.0001 2.7032 14 6 9.7076 5.8348 3.7939 15 7 8.9796 6.8545 4.1937 16 14 11.5147 5.7387 4.2572 17 1 12.1066 4.5016 3.6874 18 1 12.2280 6.9237 3.7167 19 1 11.6460 5.7140 5.7361 20 6 4.1188 2.7611 0.0324 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5137 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 1.8305 -0.5260 0.7815 25 1 1.6458 1.8949 0.8899 26 1 1.6458 1.8947 -0.8900 27 1 4.1376 -0.3478 1.2647 28 1 3.4347 1.0312 2.1689 29 1 6.2200 0.6805 1.0759 30 1 5.6740 1.6226 2.4897 31 1 5.2162 3.7917 2.3428 32 1 5.6434 4.6795 0.8604 33 1 7.4824 2.7864 2.3938 34 1 7.9096 3.6742 0.9115 35 1 7.5001 5.8225 2.0811 36 1 7.0729 4.9340 3.5631 37 1 9.3810 7.5564 4.7295 38 1 3.5036 3.4138 0.6517 39 1 4.1994 3.1610 -0.9784 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070799531.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:00 Heat of formation + Delta-G solvation = -37.888113 kcal Electronic energy + Delta-G solvation = -15530.570102 eV Core-core repulsion = 13085.076606 eV Total energy + Delta-G solvation = -2445.493496 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.30376 -37.26552 -35.88781 -34.13904 -31.90195 -30.39384 -28.43437 -26.65414 -24.67812 -24.13813 -22.39395 -21.56206 -20.69931 -18.49032 -17.62096 -16.89122 -16.51732 -16.21523 -15.60414 -15.22437 -14.88527 -14.67230 -14.39184 -14.14745 -13.87710 -13.57123 -13.23684 -12.93551 -12.80065 -12.71711 -12.51262 -12.27497 -12.15337 -11.83882 -11.72229 -11.54409 -11.44854 -11.35113 -11.06578 -10.56885 -9.43861 -9.24914 -8.21364 -6.32472 1.39376 1.39848 1.53692 2.40345 2.98581 3.11624 3.25393 3.65956 3.85804 3.93306 4.19079 4.30055 4.33940 4.38818 4.52311 4.56226 4.59342 4.68561 4.71574 4.74014 4.86117 4.90110 4.98321 5.03711 5.05895 5.07778 5.16053 5.25101 5.38864 5.51132 5.72505 5.84401 5.99396 6.10127 6.11870 6.27370 6.42480 6.84251 7.36829 8.90898 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.076391 B = 0.003879 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 366.446659 B = 7217.313222 C = 7333.742100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.703 5.703 3 C 0.074 3.926 4 C -0.083 4.083 5 H 0.090 0.910 6 C -0.129 4.129 7 C 0.037 3.963 8 N -0.541 5.541 9 C 0.065 3.935 10 C -0.088 4.088 11 C 0.026 3.974 12 C -0.543 4.543 13 H 0.058 0.942 14 C -0.002 4.002 15 N -0.934 5.934 16 Si 0.967 3.033 17 H -0.262 1.262 18 H -0.277 1.277 19 H -0.277 1.277 20 C 0.044 3.956 21 H 0.022 0.978 22 H 0.065 0.935 23 H 0.078 0.922 24 H 0.346 0.654 25 H 0.028 0.972 26 H 0.077 0.923 27 H 0.092 0.908 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.044 0.956 31 H 0.025 0.975 32 H 0.065 0.935 33 H 0.047 0.953 34 H 0.050 0.950 35 H -0.008 1.008 36 H -0.010 1.010 37 H 0.264 0.736 38 H 0.043 0.957 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.183 -13.316 -7.375 21.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.334 5.334 3 C -0.055 4.055 4 C -0.102 4.102 5 H 0.108 0.892 6 C -0.167 4.167 7 C -0.091 4.091 8 N -0.265 5.265 9 C -0.063 4.063 10 C -0.126 4.126 11 C -0.012 4.012 12 C -0.581 4.581 13 H 0.076 0.924 14 C -0.199 4.199 15 N -0.574 5.574 16 Si 0.791 3.209 17 H -0.186 1.186 18 H -0.202 1.202 19 H -0.202 1.202 20 C -0.084 4.084 21 H 0.041 0.959 22 H 0.084 0.916 23 H 0.097 0.903 24 H 0.164 0.836 25 H 0.046 0.954 26 H 0.095 0.905 27 H 0.111 0.889 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.062 0.938 31 H 0.043 0.957 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.010 0.990 36 H 0.008 0.992 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.767 -13.273 -8.361 21.544 hybrid contribution 0.169 0.904 2.063 2.259 sum -14.597 -12.369 -6.298 20.143 Atomic orbital electron populations 1.22239 0.86954 1.02634 1.00540 1.60404 1.08573 1.13954 1.50433 1.21841 0.93096 0.89911 1.00683 1.22215 0.94500 0.95022 0.98506 0.89202 1.22804 0.95113 1.01654 0.97162 1.22872 0.98268 0.91888 0.96025 1.63567 1.27627 1.02613 1.32653 1.22169 0.96122 0.93172 0.94879 1.21368 0.94469 0.98013 0.98707 1.18975 0.95167 0.93292 0.93741 1.21716 0.96668 1.07142 1.32528 0.92366 1.26009 1.03212 0.94894 0.95829 1.70108 1.38128 1.11429 1.37781 0.85369 0.79024 0.78468 0.78016 1.18641 1.20219 1.20213 1.23106 0.88010 0.97190 1.00068 0.95909 0.91607 0.90344 0.83609 0.95394 0.90493 0.88910 0.91714 0.90592 0.93772 0.95702 0.91637 0.93447 0.93130 0.98987 0.99194 0.92727 0.93817 0.89856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.70 127.69 1.37 1.69 16 2 N -0.70 -10.95 6.86 -537.15 -3.68 -14.64 16 3 C 0.07 1.26 5.19 86.30 0.45 1.71 16 4 C -0.08 -1.63 3.29 -9.41 -0.03 -1.66 16 5 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 6 C -0.13 -2.57 5.61 31.77 0.18 -2.40 16 7 C 0.04 1.01 6.21 86.65 0.54 1.55 16 8 N -0.54 -16.58 5.16 -885.51 -4.57 -21.15 16 9 C 0.06 2.37 4.54 86.30 0.39 2.76 16 10 C -0.09 -3.84 5.18 30.59 0.16 -3.69 16 11 C 0.03 1.42 4.97 29.85 0.15 1.57 16 12 C -0.54 -31.97 9.11 25.60 0.23 -31.74 16 13 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 14 C 0.00 -0.12 5.46 84.65 0.46 0.35 16 15 N -0.93 -57.93 13.29 21.45 0.28 -57.65 16 16 Si 0.97 45.16 29.54 68.60 2.03 47.18 16 17 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 18 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 20 C 0.04 1.08 6.15 86.77 0.53 1.61 16 21 H 0.02 0.28 8.14 -2.39 -0.02 0.26 16 22 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 23 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 24 H 0.35 4.83 8.02 -89.69 -0.72 4.11 16 25 H 0.03 0.49 8.11 -2.39 -0.02 0.47 16 26 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.09 1.53 8.11 -2.39 -0.02 1.51 16 28 H 0.06 1.27 8.02 -2.38 -0.02 1.25 16 29 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.04 1.32 6.91 -2.39 -0.02 1.31 16 31 H 0.02 0.92 7.96 -2.39 -0.02 0.90 16 32 H 0.07 2.40 8.07 -2.39 -0.02 2.38 16 33 H 0.05 2.04 7.14 -2.39 -0.02 2.03 16 34 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 35 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 36 H -0.01 -0.61 8.14 -2.39 -0.02 -0.62 16 37 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 38 H 0.04 1.07 7.71 -2.39 -0.02 1.05 16 39 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -65.14 310.09 -1.25 -66.39 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: 0.27 Total: 8.12 kcal Atomic # 6 Polarization: -32.69 SS G_CDS: 4.43 Total: -28.26 kcal Atomic # 7 Polarization: -85.46 SS G_CDS: -7.97 Total: -93.43 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -65.14 -1.25 -66.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070799531.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.499 kcal (2) G-P(sol) polarization free energy of solvation -65.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds