Wall clock time and date at job start Mon Mar 30 2020 02:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46901 * 109.46568 * 2 1 4 4 C 1.46893 * 111.00249 * 295.73519 * 3 2 1 5 5 C 1.53003 * 109.47272 * 288.96201 * 4 3 2 6 6 C 1.53004 * 109.47147 * 185.16508 * 5 4 3 7 7 C 1.50701 * 109.46877 * 179.97438 * 6 5 4 8 8 H 1.08004 * 120.00072 * 0.02562 * 7 6 5 9 9 C 1.37874 * 119.99712 * 179.72260 * 7 6 5 10 10 N 1.31516 * 120.00262 * 0.28536 * 9 7 6 11 11 Si 1.86800 * 119.99893 * 180.27938 * 9 7 6 12 12 H 1.48495 * 109.47460 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47450 * 120.00497 * 11 9 7 14 14 H 1.48507 * 109.47047 * 240.00330 * 11 9 7 15 15 C 1.46899 * 111.00341 * 59.69353 * 3 2 1 16 16 H 1.09004 * 110.62726 * 297.69650 * 15 3 2 17 17 C 1.55146 * 110.70604 * 60.98979 * 15 3 2 18 18 C 1.54906 * 101.65380 * 154.03865 * 17 15 3 19 19 N 1.47845 * 104.79685 * 322.93275 * 18 17 15 20 20 C 1.47450 * 108.56535 * 24.09079 * 19 18 17 21 21 H 1.09000 * 109.47250 * 65.05439 * 1 2 3 22 22 H 1.09004 * 109.46770 * 185.04813 * 1 2 3 23 23 H 1.08994 * 109.47545 * 305.04875 * 1 2 3 24 24 H 1.08993 * 109.47352 * 240.00217 * 2 1 3 25 25 H 1.08998 * 109.46846 * 119.99758 * 2 1 3 26 26 H 1.09002 * 109.47582 * 168.96626 * 4 3 2 27 27 H 1.09000 * 109.47467 * 48.96370 * 4 3 2 28 28 H 1.08999 * 109.47359 * 65.16784 * 5 4 3 29 29 H 1.08997 * 109.47157 * 305.16794 * 5 4 3 30 30 H 1.09007 * 109.46802 * 60.00275 * 6 5 4 31 31 H 1.08997 * 109.47325 * 300.00182 * 6 5 4 32 32 H 0.97003 * 120.00067 * 179.97438 * 10 9 7 33 33 H 1.09004 * 110.98700 * 272.13038 * 17 15 3 34 34 H 1.08996 * 110.99159 * 35.94358 * 17 15 3 35 35 H 1.08997 * 110.37507 * 204.10041 * 18 17 15 36 36 H 1.09006 * 110.46514 * 81.80132 * 18 17 15 37 37 H 1.00891 * 111.00172 * 146.36467 * 19 18 17 38 38 H 1.09004 * 109.88749 * 239.60416 * 20 19 18 39 39 H 1.09005 * 110.01595 * 118.49753 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0195 1.3850 0.0000 4 6 1.6335 2.0799 -1.2353 5 6 2.4436 1.5233 -2.4080 6 6 2.1363 2.3324 -3.6697 7 6 2.9347 1.7846 -4.8245 8 1 3.5949 0.9432 -4.6737 9 6 2.8176 2.3536 -6.0749 10 7 2.0135 3.3779 -6.2586 11 14 3.8013 1.6696 -7.5081 12 1 4.6244 0.5249 -7.0421 13 1 2.8724 1.2102 -8.5717 14 1 4.6888 2.7298 -8.0501 15 6 1.5425 2.1121 1.1840 16 1 0.4542 2.1732 1.1844 17 6 2.0585 1.4414 2.4843 18 6 2.0595 2.6343 3.4726 19 7 2.4830 3.7958 2.6619 20 6 2.1682 3.5212 1.2478 21 1 -0.3634 0.4334 -0.9318 22 1 -0.3633 -1.0237 0.0904 23 1 -0.3634 0.5901 0.8412 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.8328 3.1463 -1.1299 27 1 0.5708 1.9256 -1.4222 28 1 2.1758 0.4795 -2.5716 29 1 3.5073 1.5942 -2.1809 30 1 2.4042 3.3763 -3.5060 31 1 1.0726 2.2615 -3.8968 32 1 1.9314 3.7784 -7.1383 33 1 1.3763 0.6590 2.8173 34 1 3.0653 1.0470 2.3473 35 1 2.7688 2.4568 4.2809 36 1 1.0594 2.7968 3.8748 37 1 2.0294 4.6406 2.9759 38 1 3.0809 3.5490 0.6526 39 1 1.4588 4.2593 0.8733 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070899250.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:20 Heat of formation + Delta-G solvation = -7.923287 kcal Electronic energy + Delta-G solvation = -16109.856864 eV Core-core repulsion = 13665.662740 eV Total energy + Delta-G solvation = -2444.194124 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.38848 -36.52943 -33.68397 -31.60170 -30.24406 -29.53505 -27.65525 -25.83097 -23.58985 -22.11690 -21.17433 -19.95907 -19.04647 -16.86830 -16.47977 -16.14533 -15.02996 -14.56543 -14.36942 -13.93091 -13.49833 -13.11419 -12.86943 -12.66735 -12.31112 -12.27294 -11.82824 -11.69228 -11.43023 -11.16313 -11.10000 -10.86238 -10.77557 -10.56177 -10.42579 -10.36069 -9.54133 -9.28088 -9.00816 -8.51389 -8.31067 -7.99681 -5.96377 -3.98017 3.33647 3.40992 3.45738 4.00699 4.27433 4.49928 4.58084 4.79799 5.04150 5.18170 5.25777 5.32459 5.38364 5.39725 5.51649 5.59471 5.72585 5.75704 5.78628 5.87000 5.96705 6.10397 6.16252 6.20399 6.36526 6.39044 6.73142 6.78683 6.85847 7.18180 7.26038 7.41965 7.44693 7.73058 7.88335 8.04583 8.48379 9.09504 9.65931 11.15169 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.040861 B = 0.005183 C = 0.004882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.092081 B = 5400.888293 C = 5733.491771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.049 3.951 3 N -0.524 5.524 4 C 0.049 3.951 5 C -0.102 4.102 6 C 0.022 3.978 7 C -0.516 4.516 8 H 0.055 0.945 9 C 0.055 3.945 10 N -0.897 5.897 11 Si 0.891 3.109 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.284 1.284 15 C 0.060 3.940 16 H 0.046 0.954 17 C -0.120 4.120 18 C 0.046 3.954 19 N -0.682 5.682 20 C 0.051 3.949 21 H 0.061 0.939 22 H 0.057 0.943 23 H 0.051 0.949 24 H 0.082 0.918 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.032 0.968 28 H 0.045 0.955 29 H 0.056 0.944 30 H 0.015 0.985 31 H 0.012 0.988 32 H 0.259 0.741 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.038 0.962 37 H 0.336 0.664 38 H 0.091 0.909 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.119 -3.095 17.482 18.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.079 4.079 3 N -0.247 5.247 4 C -0.078 4.078 5 C -0.140 4.140 6 C -0.016 4.016 7 C -0.554 4.554 8 H 0.074 0.926 9 C -0.145 4.145 10 N -0.537 5.537 11 Si 0.719 3.281 12 H -0.197 1.197 13 H -0.211 1.211 14 H -0.210 1.210 15 C -0.050 4.050 16 H 0.064 0.936 17 C -0.159 4.159 18 C -0.083 4.083 19 N -0.311 5.311 20 C -0.078 4.078 21 H 0.080 0.920 22 H 0.076 0.924 23 H 0.070 0.930 24 H 0.100 0.900 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.033 0.967 31 H 0.031 0.969 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.057 0.943 37 H 0.151 0.849 38 H 0.109 0.891 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.970 -3.167 17.325 17.722 hybrid contribution -1.530 -0.140 -0.967 1.815 sum -3.500 -3.308 16.358 17.052 Atomic orbital electron populations 1.22425 0.98764 1.01879 1.02074 1.22159 0.92533 0.90546 1.02710 1.62393 1.58781 1.01898 1.01665 1.22384 0.97941 0.98285 0.89176 1.21610 0.99023 0.99325 0.94030 1.19078 0.96675 0.95148 0.90693 1.21298 1.24875 1.15516 0.93744 0.92637 1.25025 0.95530 0.95073 0.98895 1.69979 1.37787 1.23132 1.22797 0.86555 0.80018 0.79016 0.82537 1.19717 1.21104 1.21020 1.22855 0.96655 0.94219 0.91295 0.93600 1.22747 1.02609 0.96908 0.93594 1.22795 0.98460 0.90587 0.96504 1.61875 1.61659 1.04968 1.02630 1.22698 1.00763 0.94622 0.89691 0.91965 0.92414 0.93015 0.89990 0.91274 0.91269 0.94955 0.93662 0.92541 0.96652 0.96948 0.93146 0.91394 0.89572 0.90430 0.94343 0.84872 0.89092 0.93280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.38 9.27 37.16 0.34 -2.03 16 2 C 0.05 0.65 5.70 -3.82 -0.02 0.63 16 3 N -0.52 -7.86 4.50 -224.48 -1.01 -8.87 16 4 C 0.05 0.86 4.69 -3.83 -0.02 0.84 16 5 C -0.10 -2.15 5.08 -26.73 -0.14 -2.29 16 6 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 7 C -0.52 -14.88 9.11 -34.44 -0.31 -15.20 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 9 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 10 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16 11 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 15 C 0.06 0.77 2.13 -65.89 -0.14 0.63 16 16 H 0.05 0.60 6.39 -51.93 -0.33 0.26 16 17 C -0.12 -1.33 5.42 -24.59 -0.13 -1.46 16 18 C 0.05 0.46 7.57 -2.30 -0.02 0.44 16 19 N -0.68 -7.85 7.39 -110.79 -0.82 -8.67 16 20 C 0.05 0.67 5.91 -2.84 -0.02 0.66 16 21 H 0.06 0.87 6.53 -51.93 -0.34 0.53 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.60 6.20 -51.93 -0.32 0.28 16 24 H 0.08 1.20 6.61 -51.93 -0.34 0.86 16 25 H 0.07 0.82 7.15 -51.93 -0.37 0.45 16 26 H 0.07 1.23 6.64 -51.93 -0.35 0.89 16 27 H 0.03 0.57 6.07 -51.93 -0.32 0.25 16 28 H 0.04 0.94 6.86 -51.93 -0.36 0.58 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 34 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.34 3.22 8.91 -39.30 -0.35 2.87 16 38 H 0.09 1.39 7.79 -51.93 -0.40 0.99 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 299.77 15.07 4.52 4.52 Total: -1.00 -30.23 299.77 -9.10 -39.33 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -6.82 Total: -0.85 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: -0.69 Total: -15.83 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: -1.09 Total: -44.13 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.23 -9.10 -39.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070899250.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.411 kcal (2) G-P(sol) polarization free energy of solvation -30.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds