Wall clock time and date at job start Mon Mar 30 2020 02:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46901 * 109.46568 * 2 1 4 4 C 1.46893 * 111.00249 * 295.73519 * 3 2 1 5 5 C 1.53003 * 109.47272 * 288.96201 * 4 3 2 6 6 C 1.53004 * 109.47147 * 185.16508 * 5 4 3 7 7 C 1.50701 * 109.46877 * 179.97438 * 6 5 4 8 8 H 1.08004 * 120.00072 * 0.02562 * 7 6 5 9 9 C 1.37874 * 119.99712 * 179.72260 * 7 6 5 10 10 N 1.31516 * 120.00262 * 0.28536 * 9 7 6 11 11 Si 1.86800 * 119.99893 * 180.27938 * 9 7 6 12 12 H 1.48495 * 109.47460 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47450 * 120.00497 * 11 9 7 14 14 H 1.48507 * 109.47047 * 240.00330 * 11 9 7 15 15 C 1.46899 * 111.00341 * 59.69353 * 3 2 1 16 16 H 1.09004 * 110.62726 * 297.69650 * 15 3 2 17 17 C 1.55146 * 110.70604 * 60.98979 * 15 3 2 18 18 C 1.54906 * 101.65380 * 154.03865 * 17 15 3 19 19 N 1.47845 * 104.79685 * 322.93275 * 18 17 15 20 20 C 1.47450 * 108.56535 * 24.09079 * 19 18 17 21 21 H 1.09000 * 109.47250 * 65.05439 * 1 2 3 22 22 H 1.09004 * 109.46770 * 185.04813 * 1 2 3 23 23 H 1.08994 * 109.47545 * 305.04875 * 1 2 3 24 24 H 1.08993 * 109.47352 * 240.00217 * 2 1 3 25 25 H 1.08998 * 109.46846 * 119.99758 * 2 1 3 26 26 H 1.09002 * 109.47582 * 168.96626 * 4 3 2 27 27 H 1.09000 * 109.47467 * 48.96370 * 4 3 2 28 28 H 1.08999 * 109.47359 * 65.16784 * 5 4 3 29 29 H 1.08997 * 109.47157 * 305.16794 * 5 4 3 30 30 H 1.09007 * 109.46802 * 60.00275 * 6 5 4 31 31 H 1.08997 * 109.47325 * 300.00182 * 6 5 4 32 32 H 0.97003 * 120.00067 * 179.97438 * 10 9 7 33 33 H 1.09004 * 110.98700 * 272.13038 * 17 15 3 34 34 H 1.08996 * 110.99159 * 35.94358 * 17 15 3 35 35 H 1.08997 * 110.37507 * 204.10041 * 18 17 15 36 36 H 1.09006 * 110.46514 * 81.80132 * 18 17 15 37 37 H 1.00891 * 111.00172 * 146.36467 * 19 18 17 38 38 H 1.09004 * 109.88749 * 239.60416 * 20 19 18 39 39 H 1.09005 * 110.01595 * 118.49753 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0195 1.3850 0.0000 4 6 1.6335 2.0799 -1.2353 5 6 2.4436 1.5233 -2.4080 6 6 2.1363 2.3324 -3.6697 7 6 2.9347 1.7846 -4.8245 8 1 3.5949 0.9432 -4.6737 9 6 2.8176 2.3536 -6.0749 10 7 2.0135 3.3779 -6.2586 11 14 3.8013 1.6696 -7.5081 12 1 4.6244 0.5249 -7.0421 13 1 2.8724 1.2102 -8.5717 14 1 4.6888 2.7298 -8.0501 15 6 1.5425 2.1121 1.1840 16 1 0.4542 2.1732 1.1844 17 6 2.0585 1.4414 2.4843 18 6 2.0595 2.6343 3.4726 19 7 2.4830 3.7958 2.6619 20 6 2.1682 3.5212 1.2478 21 1 -0.3634 0.4334 -0.9318 22 1 -0.3633 -1.0237 0.0904 23 1 -0.3634 0.5901 0.8412 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.8328 3.1463 -1.1299 27 1 0.5708 1.9256 -1.4222 28 1 2.1758 0.4795 -2.5716 29 1 3.5073 1.5942 -2.1809 30 1 2.4042 3.3763 -3.5060 31 1 1.0726 2.2615 -3.8968 32 1 1.9314 3.7784 -7.1383 33 1 1.3763 0.6590 2.8173 34 1 3.0653 1.0470 2.3473 35 1 2.7688 2.4568 4.2809 36 1 1.0594 2.7968 3.8748 37 1 2.0294 4.6406 2.9759 38 1 3.0809 3.5490 0.6526 39 1 1.4588 4.2593 0.8733 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070899250.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:19 Heat of formation + Delta-G solvation = -29.184753 kcal Electronic energy + Delta-G solvation = -16110.778831 eV Core-core repulsion = 13665.662740 eV Total energy + Delta-G solvation = -2445.116090 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.46152 -37.66961 -35.66115 -33.47319 -31.32117 -30.59849 -29.03480 -27.39171 -25.13083 -23.56083 -22.18207 -21.50315 -20.24504 -18.45473 -17.77509 -17.53519 -16.58718 -16.13630 -15.77966 -15.04916 -14.70333 -14.45434 -14.28229 -14.02779 -13.60184 -13.50626 -13.14111 -13.08872 -12.85500 -12.68627 -12.48029 -12.41896 -12.11218 -11.97086 -11.78342 -11.70890 -11.32685 -11.25583 -11.03047 -10.55280 -9.42066 -9.17483 -8.20201 -6.31060 1.39723 1.40171 1.53858 2.40966 2.89414 3.12966 3.35755 3.60375 3.90825 4.01459 4.13917 4.27766 4.32450 4.37421 4.39622 4.44386 4.55547 4.69331 4.74111 4.82868 4.90931 4.95326 5.03494 5.04155 5.11131 5.16090 5.21881 5.25438 5.36449 5.53561 5.74566 5.86266 5.88306 6.11965 6.24451 6.29408 6.48529 6.85742 7.38226 8.91993 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.040861 B = 0.005183 C = 0.004882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.092081 B = 5400.888293 C = 5733.491771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.047 3.953 3 N -0.532 5.532 4 C 0.063 3.937 5 C -0.085 4.085 6 C 0.027 3.973 7 C -0.541 4.541 8 H 0.058 0.942 9 C 0.000 4.000 10 N -0.934 5.934 11 Si 0.965 3.035 12 H -0.263 1.263 13 H -0.277 1.277 14 H -0.277 1.277 15 C 0.059 3.941 16 H 0.052 0.948 17 C -0.114 4.114 18 C 0.048 3.952 19 N -0.692 5.692 20 C 0.053 3.947 21 H 0.040 0.960 22 H 0.075 0.925 23 H 0.061 0.939 24 H 0.066 0.934 25 H 0.091 0.909 26 H 0.062 0.938 27 H 0.031 0.969 28 H 0.048 0.952 29 H 0.048 0.952 30 H -0.010 1.010 31 H -0.010 1.010 32 H 0.263 0.737 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.057 0.943 37 H 0.347 0.653 38 H 0.062 0.938 39 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.048 -4.224 18.647 19.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.081 4.081 3 N -0.256 5.256 4 C -0.065 4.065 5 C -0.123 4.123 6 C -0.011 4.011 7 C -0.579 4.579 8 H 0.076 0.924 9 C -0.198 4.198 10 N -0.574 5.574 11 Si 0.790 3.210 12 H -0.187 1.187 13 H -0.202 1.202 14 H -0.203 1.203 15 C -0.050 4.050 16 H 0.069 0.931 17 C -0.152 4.152 18 C -0.081 4.081 19 N -0.322 5.322 20 C -0.077 4.077 21 H 0.059 0.941 22 H 0.094 0.906 23 H 0.080 0.920 24 H 0.084 0.916 25 H 0.109 0.891 26 H 0.081 0.919 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.008 0.992 31 H 0.008 0.992 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.106 0.894 36 H 0.075 0.925 37 H 0.164 0.836 38 H 0.081 0.919 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.900 -4.302 18.516 19.104 hybrid contribution -1.559 0.235 -1.284 2.034 sum -3.459 -4.067 17.232 18.040 Atomic orbital electron populations 1.22351 0.97712 1.03055 1.01324 1.22219 0.93410 0.89449 1.03005 1.62307 1.59406 1.02689 1.01162 1.22055 0.97041 0.97934 0.89433 1.21338 0.99064 0.98659 0.93280 1.18967 0.94893 0.94457 0.92779 1.21712 1.25377 1.15862 0.94966 0.92400 1.25978 0.96554 0.95246 1.02018 1.70105 1.39168 1.24371 1.23805 0.85397 0.78505 0.78575 0.78568 1.18655 1.20240 1.20295 1.22913 0.96892 0.94088 0.91126 0.93059 1.22729 1.02238 0.97727 0.92539 1.22862 0.99818 0.89282 0.96141 1.61815 1.62308 1.06220 1.01871 1.22564 0.99411 0.95116 0.90570 0.94116 0.90594 0.91970 0.91561 0.89099 0.91948 0.95065 0.93373 0.93295 0.99151 0.99190 0.92775 0.89379 0.90798 0.89409 0.92481 0.83615 0.91939 0.93164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.25 9.27 71.98 0.67 -3.58 16 2 C 0.05 1.19 5.70 86.30 0.49 1.68 16 3 N -0.53 -15.62 4.50 -864.12 -3.88 -19.50 16 4 C 0.06 2.25 4.69 86.31 0.40 2.66 16 5 C -0.09 -3.70 5.08 30.60 0.16 -3.54 16 6 C 0.03 1.45 4.97 29.85 0.15 1.60 16 7 C -0.54 -31.78 9.11 25.60 0.23 -31.55 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 9 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 10 N -0.93 -57.88 13.29 21.45 0.28 -57.59 16 11 Si 0.97 45.15 29.54 68.60 2.03 47.18 16 12 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 13 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 14 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 15 C 0.06 1.44 2.13 46.10 0.10 1.54 16 16 H 0.05 1.22 6.39 -2.38 -0.02 1.21 16 17 C -0.11 -2.22 5.42 31.98 0.17 -2.05 16 18 C 0.05 0.82 7.57 86.77 0.66 1.48 16 19 N -0.69 -14.85 7.39 -504.42 -3.73 -18.57 16 20 C 0.05 1.37 5.91 86.64 0.51 1.88 16 21 H 0.04 1.10 6.53 -2.39 -0.02 1.09 16 22 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 23 H 0.06 1.29 6.20 -2.39 -0.01 1.27 16 24 H 0.07 1.89 6.61 -2.39 -0.02 1.87 16 25 H 0.09 1.93 7.15 -2.39 -0.02 1.91 16 26 H 0.06 2.30 6.64 -2.39 -0.02 2.28 16 27 H 0.03 1.12 6.07 -2.39 -0.01 1.10 16 28 H 0.05 2.03 6.86 -2.39 -0.02 2.02 16 29 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 30 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 31 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 32 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 33 H 0.09 1.37 8.08 -2.39 -0.02 1.35 16 34 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 37 H 0.35 6.07 8.91 -89.70 -0.80 5.27 16 38 H 0.06 1.96 7.79 -2.38 -0.02 1.94 16 39 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 Total: -1.00 -65.22 299.77 -1.09 -66.31 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 0.21 Total: 11.62 kcal Atomic # 6 Polarization: -33.45 SS G_CDS: 4.00 Total: -29.45 kcal Atomic # 7 Polarization: -88.34 SS G_CDS: -7.33 Total: -95.67 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -65.22 -1.09 -66.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070899250.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.126 kcal (2) G-P(sol) polarization free energy of solvation -65.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds