Wall clock time and date at job start Mon Mar 30 2020 03:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46902 * 111.00044 * 2 1 4 4 C 1.53006 * 109.46626 * 66.04918 * 3 2 1 5 5 C 1.52999 * 109.46623 * 179.97438 * 4 3 2 6 6 C 1.50706 * 109.46953 * 179.97438 * 5 4 3 7 7 H 1.07999 * 119.99816 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00344 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99769 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00300 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46819 * 59.99744 * 10 8 6 12 12 H 1.48494 * 109.47285 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47196 * 300.00241 * 10 8 6 14 14 C 1.46908 * 111.00118 * 236.05156 * 2 1 3 15 15 H 1.09000 * 109.50404 * 63.95213 * 14 2 1 16 16 C 1.53125 * 109.49756 * 303.87439 * 14 2 1 17 17 C 1.53121 * 109.15525 * 182.44201 * 16 14 2 18 18 C 1.53041 * 109.31167 * 57.59442 * 17 16 14 19 19 N 1.46854 * 109.52155 * 300.84370 * 18 17 16 20 20 C 1.46841 * 111.20015 * 61.74104 * 19 18 17 21 21 H 1.09000 * 109.47532 * 59.99517 * 1 2 3 22 22 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47027 * 299.99634 * 1 2 3 24 24 H 1.08993 * 109.47737 * 306.05050 * 3 2 1 25 25 H 1.09000 * 109.47263 * 186.04612 * 3 2 1 26 26 H 1.09000 * 109.47050 * 299.99824 * 4 3 2 27 27 H 1.09001 * 109.46801 * 59.99937 * 4 3 2 28 28 H 1.09000 * 109.47486 * 299.99829 * 5 4 3 29 29 H 1.09001 * 109.47362 * 60.00551 * 5 4 3 30 30 H 0.97000 * 120.00540 * 180.02562 * 9 8 6 31 31 H 1.08994 * 109.52291 * 302.30818 * 16 14 2 32 32 H 1.08997 * 109.52516 * 62.50397 * 16 14 2 33 33 H 1.09002 * 109.47192 * 297.65690 * 17 16 14 34 34 H 1.08996 * 109.54009 * 177.57747 * 17 16 14 35 35 H 1.08997 * 109.46660 * 180.82474 * 18 17 16 36 36 H 1.09003 * 109.44740 * 60.84972 * 18 17 16 37 37 H 1.00903 * 110.99687 * 297.63665 * 19 18 17 38 38 H 1.08998 * 109.46373 * 178.24255 * 20 19 18 39 39 H 1.09000 * 109.45594 * 58.26155 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0573 1.3184 5 6 2.1803 3.4855 1.3186 6 6 1.8213 4.1614 2.6169 7 1 1.2583 3.6257 3.3669 8 6 2.2114 5.4636 2.8472 9 7 2.8974 6.1157 1.9341 10 14 1.7658 6.3015 4.4562 11 1 2.3566 5.5443 5.5888 12 1 2.2986 7.6876 4.4566 13 1 0.2885 6.3384 4.6025 14 6 1.9955 -0.7659 -1.1377 15 1 1.7047 -0.2802 -2.0692 16 6 1.4275 -2.1875 -1.1034 17 6 2.0282 -2.9965 -2.2565 18 6 3.5538 -2.9943 -2.1354 19 7 4.0472 -1.6117 -2.1745 20 6 3.5220 -0.8284 -1.0490 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.5611 1.9274 -0.8308 25 1 3.0797 1.3444 -0.1082 26 1 0.5472 2.0844 1.4266 27 1 2.0658 1.5013 2.1492 28 1 3.2646 3.4581 1.2106 29 1 1.7462 4.0418 0.4878 30 1 3.1722 7.0317 2.0962 31 1 1.6846 -2.6597 -0.1553 32 1 0.3435 -2.1494 -1.2104 33 1 1.7379 -2.5464 -3.2059 34 1 1.6610 -4.0218 -2.2125 35 1 3.9846 -3.5573 -2.9633 36 1 3.8436 -3.4569 -1.1919 37 1 3.8246 -1.1732 -3.0555 38 1 3.9297 0.1817 -1.0878 39 1 3.8121 -1.3014 -0.1107 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082499828.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:07 Heat of formation + Delta-G solvation = -13.878374 kcal Electronic energy + Delta-G solvation = -15989.554431 eV Core-core repulsion = 13545.102075 eV Total energy + Delta-G solvation = -2444.452356 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.47724 -36.50402 -33.64114 -31.96966 -31.22212 -29.50415 -27.18467 -25.22600 -23.28471 -22.92896 -21.29583 -20.02348 -19.83335 -16.46455 -16.25077 -15.39408 -15.20505 -14.68180 -14.46061 -14.32741 -14.14046 -13.24173 -12.80401 -12.77195 -12.34186 -12.22892 -11.85438 -11.65833 -11.47487 -11.25081 -10.98675 -10.93528 -10.79543 -10.58495 -10.44515 -10.33660 -9.55698 -9.28647 -9.03349 -8.46969 -8.30871 -8.06684 -5.96319 -3.98364 3.35951 3.39981 3.42777 3.96284 4.32892 4.49750 4.67466 4.76009 4.89147 5.02904 5.24906 5.34367 5.39360 5.41230 5.49430 5.61222 5.69248 5.76796 5.81835 5.87526 5.90585 6.00766 6.06325 6.17248 6.20899 6.38401 6.71986 6.74925 6.92662 7.15211 7.24828 7.38659 7.42390 7.71793 7.87222 8.04138 8.47607 9.08582 9.65409 11.15141 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.054682 B = 0.004656 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.930515 B = 6012.733494 C = 6318.104843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.535 5.535 3 C 0.051 3.949 4 C -0.104 4.104 5 C 0.022 3.978 6 C -0.519 4.519 7 H 0.054 0.946 8 C 0.056 3.944 9 N -0.897 5.897 10 Si 0.892 3.108 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.050 3.950 15 H 0.033 0.967 16 C -0.115 4.115 17 C -0.156 4.156 18 C 0.055 3.945 19 N -0.683 5.683 20 C 0.060 3.940 21 H 0.019 0.981 22 H 0.063 0.937 23 H 0.075 0.925 24 H 0.026 0.974 25 H 0.074 0.926 26 H 0.046 0.954 27 H 0.055 0.945 28 H 0.016 0.984 29 H 0.012 0.988 30 H 0.260 0.740 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.338 0.662 38 H 0.081 0.919 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.995 -16.839 -8.731 19.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.259 5.259 3 C -0.076 4.076 4 C -0.142 4.142 5 C -0.016 4.016 6 C -0.557 4.557 7 H 0.072 0.928 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.720 3.280 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.203 1.203 14 C -0.061 4.061 15 H 0.051 0.949 16 C -0.152 4.152 17 C -0.196 4.196 18 C -0.075 4.075 19 N -0.311 5.311 20 C -0.069 4.069 21 H 0.038 0.962 22 H 0.081 0.919 23 H 0.094 0.906 24 H 0.045 0.955 25 H 0.092 0.908 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.034 0.966 29 H 0.031 0.969 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.155 0.845 38 H 0.099 0.901 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.132 -17.046 -8.018 18.871 hybrid contribution -1.586 1.141 -0.200 1.964 sum -2.718 -15.905 -8.218 18.108 Atomic orbital electron populations 1.22447 0.88033 1.01170 1.01083 1.62110 1.07527 1.15039 1.41225 1.22401 0.99886 0.86134 0.99136 1.21645 0.99997 0.98168 0.94385 1.19071 0.96240 0.89331 0.96925 1.21216 1.34779 0.97599 1.02096 0.92761 1.25022 0.95237 0.97496 0.96709 1.69955 1.38303 1.11338 1.34038 0.86662 0.78725 0.78493 0.84145 1.20215 1.21316 1.20301 1.22367 0.97126 0.94089 0.92489 0.94901 1.21688 0.99870 0.94688 0.99002 1.22287 0.97971 1.00617 0.98717 1.22048 0.92156 0.90698 1.02568 1.60750 1.61389 1.02742 1.06205 1.22172 0.91027 0.98854 0.94872 0.96213 0.91867 0.90623 0.95529 0.90798 0.93527 0.92602 0.96585 0.96916 0.93002 0.90908 0.91921 0.92283 0.91394 0.90931 0.90772 0.84491 0.90065 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 8.95 60.06 0.54 0.83 16 2 N -0.53 -8.14 4.63 -234.78 -1.09 -9.23 16 3 C 0.05 0.91 4.77 -3.82 -0.02 0.90 16 4 C -0.10 -2.21 5.08 -26.73 -0.14 -2.35 16 5 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 6 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 7 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 9 N -0.90 -27.34 13.29 55.43 0.74 -26.61 16 10 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 C 0.05 0.64 2.09 -67.63 -0.14 0.50 16 15 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 16 C -0.11 -1.24 4.85 -26.60 -0.13 -1.37 16 17 C -0.16 -1.38 6.08 -26.65 -0.16 -1.54 16 18 C 0.06 0.51 6.56 -3.83 -0.03 0.48 16 19 N -0.68 -7.46 6.87 -113.81 -0.78 -8.25 16 20 C 0.06 0.77 5.61 -3.84 -0.02 0.75 16 21 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 22 H 0.06 0.76 6.07 -51.93 -0.32 0.44 16 23 H 0.08 1.13 6.47 -51.93 -0.34 0.79 16 24 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 25 H 0.07 1.30 5.85 -51.93 -0.30 1.00 16 26 H 0.05 0.98 6.55 -51.93 -0.34 0.64 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.66 6.41 -51.93 -0.33 0.33 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.34 3.35 8.86 -39.29 -0.35 3.00 16 38 H 0.08 1.12 6.25 -51.93 -0.32 0.79 16 39 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 299.37 15.07 4.51 4.51 Total: -1.00 -30.04 299.37 -9.20 -39.25 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -6.91 Total: -1.50 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: -0.64 Total: -15.11 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: -1.13 Total: -44.09 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.04 -9.20 -39.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082499828.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.367 kcal (2) G-P(sol) polarization free energy of solvation -30.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds