Wall clock time and date at job start Mon Mar 30 2020 03:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46902 * 111.00044 * 2 1 4 4 C 1.53006 * 109.46626 * 66.04918 * 3 2 1 5 5 C 1.52999 * 109.46623 * 179.97438 * 4 3 2 6 6 C 1.50706 * 109.46953 * 179.97438 * 5 4 3 7 7 H 1.07999 * 119.99816 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00344 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99769 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00300 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46819 * 59.99744 * 10 8 6 12 12 H 1.48494 * 109.47285 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47196 * 300.00241 * 10 8 6 14 14 C 1.46908 * 111.00118 * 236.05156 * 2 1 3 15 15 H 1.09000 * 109.50404 * 63.95213 * 14 2 1 16 16 C 1.53125 * 109.49756 * 303.87439 * 14 2 1 17 17 C 1.53121 * 109.15525 * 182.44201 * 16 14 2 18 18 C 1.53041 * 109.31167 * 57.59442 * 17 16 14 19 19 N 1.46854 * 109.52155 * 300.84370 * 18 17 16 20 20 C 1.46841 * 111.20015 * 61.74104 * 19 18 17 21 21 H 1.09000 * 109.47532 * 59.99517 * 1 2 3 22 22 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47027 * 299.99634 * 1 2 3 24 24 H 1.08993 * 109.47737 * 306.05050 * 3 2 1 25 25 H 1.09000 * 109.47263 * 186.04612 * 3 2 1 26 26 H 1.09000 * 109.47050 * 299.99824 * 4 3 2 27 27 H 1.09001 * 109.46801 * 59.99937 * 4 3 2 28 28 H 1.09000 * 109.47486 * 299.99829 * 5 4 3 29 29 H 1.09001 * 109.47362 * 60.00551 * 5 4 3 30 30 H 0.97000 * 120.00540 * 180.02562 * 9 8 6 31 31 H 1.08994 * 109.52291 * 302.30818 * 16 14 2 32 32 H 1.08997 * 109.52516 * 62.50397 * 16 14 2 33 33 H 1.09002 * 109.47192 * 297.65690 * 17 16 14 34 34 H 1.08996 * 109.54009 * 177.57747 * 17 16 14 35 35 H 1.08997 * 109.46660 * 180.82474 * 18 17 16 36 36 H 1.09003 * 109.44740 * 60.84972 * 18 17 16 37 37 H 1.00903 * 110.99687 * 297.63665 * 19 18 17 38 38 H 1.08998 * 109.46373 * 178.24255 * 20 19 18 39 39 H 1.09000 * 109.45594 * 58.26155 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0573 1.3184 5 6 2.1803 3.4855 1.3186 6 6 1.8213 4.1614 2.6169 7 1 1.2583 3.6257 3.3669 8 6 2.2114 5.4636 2.8472 9 7 2.8974 6.1157 1.9341 10 14 1.7658 6.3015 4.4562 11 1 2.3566 5.5443 5.5888 12 1 2.2986 7.6876 4.4566 13 1 0.2885 6.3384 4.6025 14 6 1.9955 -0.7659 -1.1377 15 1 1.7047 -0.2802 -2.0692 16 6 1.4275 -2.1875 -1.1034 17 6 2.0282 -2.9965 -2.2565 18 6 3.5538 -2.9943 -2.1354 19 7 4.0472 -1.6117 -2.1745 20 6 3.5220 -0.8284 -1.0490 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.5611 1.9274 -0.8308 25 1 3.0797 1.3444 -0.1082 26 1 0.5472 2.0844 1.4266 27 1 2.0658 1.5013 2.1492 28 1 3.2646 3.4581 1.2106 29 1 1.7462 4.0418 0.4878 30 1 3.1722 7.0317 2.0962 31 1 1.6846 -2.6597 -0.1553 32 1 0.3435 -2.1494 -1.2104 33 1 1.7379 -2.5464 -3.2059 34 1 1.6610 -4.0218 -2.2125 35 1 3.9846 -3.5573 -2.9633 36 1 3.8436 -3.4569 -1.1919 37 1 3.8246 -1.1732 -3.0555 38 1 3.9297 0.1817 -1.0878 39 1 3.8121 -1.3014 -0.1107 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082499828.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:07 Heat of formation + Delta-G solvation = -34.827259 kcal Electronic energy + Delta-G solvation = -15990.462843 eV Core-core repulsion = 13545.102075 eV Total energy + Delta-G solvation = -2445.360768 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.49572 -37.70898 -35.59499 -33.50274 -32.43874 -30.63658 -28.80667 -26.73052 -24.53208 -24.17191 -22.55054 -21.47626 -21.02866 -18.46420 -17.48308 -16.64532 -16.40572 -16.17790 -15.68923 -15.55002 -15.47291 -14.41862 -14.32337 -13.96762 -13.72145 -13.50342 -13.30639 -13.04433 -12.81435 -12.63136 -12.54487 -12.37348 -12.17484 -11.90239 -11.70526 -11.61218 -11.39791 -11.23363 -11.02777 -10.54544 -9.35285 -9.29109 -8.19875 -6.31196 1.39926 1.43351 1.51309 2.41072 2.84849 3.13077 3.43191 3.75909 3.83888 4.03204 4.12571 4.21867 4.25478 4.34098 4.51194 4.52841 4.58169 4.65208 4.71235 4.89320 4.93114 4.96994 4.98649 5.06711 5.08849 5.10061 5.18121 5.25346 5.33270 5.51595 5.73263 5.85222 5.93680 6.08096 6.21977 6.28465 6.44825 6.85173 7.38012 8.91941 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.054682 B = 0.004656 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.930515 B = 6012.733494 C = 6318.104843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.541 5.541 3 C 0.064 3.936 4 C -0.088 4.088 5 C 0.026 3.974 6 C -0.544 4.544 7 H 0.059 0.941 8 C 0.000 4.000 9 N -0.934 5.934 10 Si 0.966 3.034 11 H -0.267 1.267 12 H -0.282 1.282 13 H -0.267 1.267 14 C 0.052 3.948 15 H 0.030 0.970 16 C -0.110 4.110 17 C -0.148 4.148 18 C 0.054 3.946 19 N -0.688 5.688 20 C 0.066 3.934 21 H 0.020 0.980 22 H 0.087 0.913 23 H 0.063 0.937 24 H 0.020 0.980 25 H 0.072 0.928 26 H 0.049 0.951 27 H 0.051 0.949 28 H -0.008 1.008 29 H -0.011 1.011 30 H 0.264 0.736 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.344 0.656 38 H 0.064 0.936 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.789 -18.235 -8.573 20.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.265 5.265 3 C -0.064 4.064 4 C -0.126 4.126 5 C -0.011 4.011 6 C -0.582 4.582 7 H 0.077 0.923 8 C -0.198 4.198 9 N -0.574 5.574 10 Si 0.790 3.210 11 H -0.192 1.192 12 H -0.207 1.207 13 H -0.191 1.191 14 C -0.058 4.058 15 H 0.048 0.952 16 C -0.148 4.148 17 C -0.188 4.188 18 C -0.075 4.075 19 N -0.317 5.317 20 C -0.064 4.064 21 H 0.039 0.961 22 H 0.106 0.894 23 H 0.082 0.918 24 H 0.038 0.962 25 H 0.090 0.910 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.010 0.990 29 H 0.007 0.993 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.088 0.912 37 H 0.162 0.838 38 H 0.082 0.918 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.934 -18.468 -7.870 20.168 hybrid contribution -1.315 1.544 -0.297 2.049 sum -3.248 -16.924 -8.168 19.070 Atomic orbital electron populations 1.22486 0.87106 1.02601 1.00533 1.62061 1.08429 1.13202 1.42807 1.22104 0.99897 0.87616 0.96754 1.21385 0.99712 0.95274 0.96250 1.18967 0.94672 0.92147 0.95364 1.21655 1.35099 0.98385 1.03070 0.92308 1.25989 0.94884 0.98246 1.00672 1.70091 1.39226 1.11800 1.36281 0.85493 0.78913 0.77313 0.79291 1.19162 1.20714 1.19148 1.22429 0.97140 0.94995 0.91236 0.95167 1.21667 1.00233 0.93205 0.99713 1.22231 0.97347 1.01298 0.97899 1.22127 0.92652 0.89578 1.03166 1.60727 1.61563 1.03516 1.05891 1.22007 0.91009 0.98147 0.95219 0.96127 0.89443 0.91792 0.96214 0.90982 0.93215 0.92986 0.98977 0.99310 0.92745 0.91467 0.91297 0.91806 0.89521 0.89086 0.91200 0.83763 0.91784 0.91013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 8.95 127.69 1.14 1.70 16 2 N -0.54 -16.11 4.63 -896.71 -4.15 -20.27 16 3 C 0.06 2.31 4.77 86.31 0.41 2.72 16 4 C -0.09 -3.82 5.08 30.60 0.16 -3.66 16 5 C 0.03 1.43 4.97 29.85 0.15 1.57 16 6 C -0.54 -31.87 9.11 25.60 0.23 -31.64 16 7 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 8 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 9 N -0.93 -57.88 13.29 21.45 0.28 -57.60 16 10 Si 0.97 44.98 29.54 68.60 2.03 47.01 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 13 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 14 C 0.05 1.28 2.09 44.97 0.09 1.37 16 15 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 16 C -0.11 -2.13 4.85 30.68 0.15 -1.98 16 17 C -0.15 -2.19 6.08 30.65 0.19 -2.00 16 18 C 0.05 0.87 6.56 86.33 0.57 1.44 16 19 N -0.69 -14.17 6.87 -514.00 -3.53 -17.70 16 20 C 0.07 1.66 5.61 86.33 0.48 2.14 16 21 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 22 H 0.09 1.90 6.07 -2.39 -0.01 1.89 16 23 H 0.06 1.85 6.47 -2.39 -0.02 1.83 16 24 H 0.02 0.73 8.12 -2.39 -0.02 0.71 16 25 H 0.07 2.62 5.85 -2.39 -0.01 2.60 16 26 H 0.05 2.10 6.55 -2.39 -0.02 2.08 16 27 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 28 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 29 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 30 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 31 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.07 1.26 6.41 -2.39 -0.02 1.24 16 33 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.34 6.33 8.86 -89.69 -0.79 5.54 16 38 H 0.06 1.80 6.25 -2.39 -0.01 1.79 16 39 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -64.41 299.37 -1.13 -65.53 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: 0.21 Total: 10.91 kcal Atomic # 6 Polarization: -31.93 SS G_CDS: 4.03 Total: -27.90 kcal Atomic # 7 Polarization: -88.16 SS G_CDS: -7.40 Total: -95.56 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -64.41 -1.13 -65.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082499828.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.706 kcal (2) G-P(sol) polarization free energy of solvation -64.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds