Wall clock time and date at job start Mon Mar 30 2020 03:38:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.29431 * 1
3 3 Si 1.86797 * 120.00053 * 2 1
4 4 H 1.48499 * 109.47035 * 179.97438 * 3 2 1
5 5 H 1.48501 * 109.47134 * 299.99263 * 3 2 1
6 6 H 1.48498 * 109.47221 * 59.99642 * 3 2 1
7 7 C 1.46511 * 119.99820 * 179.97438 * 2 1 3
8 8 H 1.08003 * 120.00078 * 194.81309 * 7 2 1
9 9 N 1.34280 * 120.00357 * 14.80897 * 7 2 1
10 10 C 1.37150 * 119.87567 * 27.55820 * 9 7 2
11 11 C 1.35142 * 119.18359 * 179.97438 * 10 9 7
12 12 N 1.48020 * 120.50935 * 180.02562 * 11 10 9
13 13 O 1.31694 * 119.99786 * 0.02562 * 12 11 10
14 14 O 1.31698 * 120.00163 * 180.02562 * 12 11 10
15 15 C 1.41369 * 118.98220 * 0.02562 * 11 10 9
16 16 O 1.35058 * 120.13338 * 180.02562 * 15 11 10
17 17 N 1.32314 * 119.72869 * 359.97438 * 15 11 10
18 18 C 1.33337 * 120.80352 * 359.97438 * 17 15 11
19 19 O 1.21824 * 119.46913 * 180.02562 * 18 17 15
20 20 H 0.96994 * 120.00150 * 0.02562 * 1 2 3
21 21 H 1.07991 * 120.41191 * 0.27367 * 10 9 7
22 22 H 0.96703 * 113.99622 * 179.97438 * 16 15 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.2943 0.0000 0.0000
3 14 2.2283 1.6177 0.0000
4 1 3.6883 1.3463 0.0006
5 1 1.8697 2.3963 -1.2126
6 1 1.8695 2.3965 1.2124
7 6 2.0268 -1.2688 0.0006
8 1 3.0799 -1.2843 0.2397
9 7 1.3889 -2.4126 -0.2961
10 6 0.2882 -2.3886 -1.1140
11 6 -0.3427 -3.5480 -1.4039
12 7 -1.5330 -3.5561 -2.2839
13 8 -1.9844 -2.4278 -2.7913
14 8 -2.1405 -4.6917 -2.5593
15 6 0.1514 -4.7529 -0.8538
16 8 -0.4610 -5.9249 -1.1286
17 7 1.2167 -4.7278 -0.0695
18 6 1.8324 -3.5784 0.2093
19 8 2.8117 -3.5835 0.9339
20 1 -0.4850 0.8400 -0.0004
21 1 -0.0670 -1.4554 -1.5253
22 1 -0.0495 -6.6918 -0.7071
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000082615219.mol2 22
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:38:52
Heat of formation + Delta-G solvation = -12.231509 kcal
Electronic energy + Delta-G solvation = -15584.697780 eV
Core-core repulsion = 12531.558548 eV
Total energy + Delta-G solvation = -3053.139232 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 227.042 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-41.31558 -38.49869 -37.52895 -36.27222 -34.73914 -33.25208 -32.92768 -30.96374
-26.57385 -25.34302 -24.08929 -22.09388 -19.70738 -19.18427 -17.85960 -17.32200
-16.46022 -16.24284 -15.79131 -15.08198 -14.69317 -14.56374 -13.75229 -13.54579
-13.27131 -12.69031 -12.12389 -11.79951 -11.21081 -10.94967 -10.62313 -10.26635
-10.19016 -9.99953 -9.72848 -9.65969 -9.45483 -8.50793 -7.79283 -5.23951
0.46917 1.44098 2.12510 2.35774 2.56995 2.59724 2.72237 3.20471
3.57095 3.62802 3.69053 4.44807 4.82663 5.35355 5.64025 5.95118
6.17056 6.47266 6.79223 7.13584 7.37982 7.56840 7.73600 7.88167
8.41806 8.72216 9.11625
Molecular weight = 227.04amu
Principal moments of inertia in cm(-1)
A = 0.029901 B = 0.011234 C = 0.008361
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 936.209450 B = 2491.741974 C = 3348.003448
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.756 5.756
2 C 0.049 3.951
3 Si 0.959 3.041
4 H -0.248 1.248
5 H -0.259 1.259
6 H -0.262 1.262
7 C -0.305 4.305
8 H 0.148 0.852
9 N -0.276 5.276
10 C 0.129 3.871
11 C -0.170 4.170
12 N 0.044 4.956
13 O -0.253 6.253
14 O -0.225 6.225
15 C 0.454 3.546
16 O -0.427 6.427
17 N -0.621 5.621
18 C 0.627 3.373
19 O -0.525 6.525
20 H 0.313 0.687
21 H 0.198 0.802
22 H 0.407 0.593
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.493 1.832 -0.736 2.475
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.380 5.380
2 C -0.177 4.177
3 Si 0.779 3.221
4 H -0.170 1.170
5 H -0.183 1.183
6 H -0.187 1.187
7 C -0.441 4.441
8 H 0.165 0.835
9 N 0.036 4.964
10 C -0.023 4.023
11 C -0.274 4.274
12 N 0.493 4.507
13 O -0.424 6.424
14 O -0.402 6.402
15 C 0.258 3.742
16 O -0.220 6.220
17 N -0.385 5.385
18 C 0.331 3.669
19 O -0.400 6.400
20 H 0.127 0.873
21 H 0.215 0.785
22 H 0.262 0.738
Dipole moment (debyes) X Y Z Total
from point charges 2.337 1.559 0.130 2.812
hybrid contribution -0.361 0.831 -0.118 0.914
sum 1.976 2.390 0.012 3.101
Atomic orbital electron populations
1.68790 1.08585 1.33394 1.27205 1.27672 0.95452 1.02282 0.92312
0.85326 0.80628 0.76401 0.79732 1.17046 1.18300 1.18678 1.22062
0.97105 0.81464 1.43430 0.83469 1.42033 1.18542 1.10299 1.25544
1.21585 0.91604 0.98867 0.90222 1.18967 0.98760 0.93296 1.16333
1.49529 1.00191 1.02134 0.98798 1.96197 1.71324 1.16614 1.58242
1.96209 1.60413 1.15302 1.68321 1.19703 0.85231 0.84935 0.84373
1.85226 1.53074 1.15117 1.68632 1.69682 1.14639 1.26250 1.27953
1.17803 0.86493 0.80049 0.82544 1.90865 1.26041 1.85242 1.37897
0.87267 0.78492 0.73834
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 41.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.76 -15.55 11.04 55.98 0.62 -14.93 14
2 C 0.05 0.95 5.25 -15.23 -0.08 0.87 14
3 Si 0.96 14.51 29.66 -169.99 -5.04 9.47 14
4 H -0.25 -3.72 7.11 56.52 0.40 -3.32 14
5 H -0.26 -3.81 7.11 56.52 0.40 -3.41 14
6 H -0.26 -3.94 7.11 56.52 0.40 -3.53 14
7 C -0.31 -6.72 9.35 -13.15 -0.12 -6.84 14
8 H 0.15 3.17 7.54 -52.48 -0.40 2.78 14
9 N -0.28 -6.46 2.71 -64.99 -0.18 -6.63 14
10 C 0.13 2.93 8.74 -16.27 -0.14 2.78 14
11 C -0.17 -3.88 6.90 -79.86 -0.55 -4.43 14
12 N 0.04 1.06 4.98 34.01 0.17 1.22 14
13 O -0.25 -6.14 19.17 -31.56 -0.61 -6.74 14
14 O -0.22 -5.35 18.03 -39.02 -0.70 -6.05 14
15 C 0.45 9.61 7.91 -16.15 -0.13 9.49 14
16 O -0.43 -7.62 11.62 -38.38 -0.45 -8.06 14
17 N -0.62 -13.98 10.39 -16.61 -0.17 -14.15 14
18 C 0.63 15.36 8.28 -88.37 -0.73 14.63 14
19 O -0.53 -13.87 16.85 5.08 0.09 -13.78 14
20 H 0.31 5.63 8.26 -40.82 -0.34 5.30 14
21 H 0.20 4.47 5.62 -52.49 -0.30 4.17 14
22 H 0.41 5.02 8.98 45.56 0.41 5.42 14
LS Contribution 222.60 15.07 3.35 3.35
Total: -1.00 -28.31 222.60 -4.09 -32.40
By element:
Atomic # 1 Polarization: 6.82 SS G_CDS: 0.59 Total: 7.40 kcal
Atomic # 6 Polarization: 18.26 SS G_CDS: -1.76 Total: 16.51 kcal
Atomic # 7 Polarization: -34.93 SS G_CDS: 0.44 Total: -34.49 kcal
Atomic # 8 Polarization: -32.97 SS G_CDS: -1.67 Total: -34.64 kcal
Atomic # 14 Polarization: 14.51 SS G_CDS: -5.04 Total: 9.47 kcal
Total LS contribution 3.35 Total: 3.35 kcal
Total: -28.31 -4.09 -32.40 kcal
The number of atoms in the molecule is 22
The average number of expansion shells was 14.00
The maximum number of expansion shells was 14
The minimum number of expansion shells was 14
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000082615219.mol2 22
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.166 kcal
(2) G-P(sol) polarization free energy of solvation -28.309 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.143 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.089 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.397 kcal
(6) G-S(sol) free energy of system = (1) + (5) -12.232 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds