Wall clock time and date at job start Mon Mar 30 2020 03:38:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.29431 * 1
3 3 Si 1.86797 * 120.00053 * 2 1
4 4 H 1.48499 * 109.47035 * 179.97438 * 3 2 1
5 5 H 1.48501 * 109.47134 * 299.99263 * 3 2 1
6 6 H 1.48498 * 109.47221 * 59.99642 * 3 2 1
7 7 C 1.46511 * 119.99820 * 179.97438 * 2 1 3
8 8 H 1.08003 * 120.00078 * 194.81309 * 7 2 1
9 9 N 1.34280 * 120.00357 * 14.80897 * 7 2 1
10 10 C 1.37150 * 119.87567 * 27.55820 * 9 7 2
11 11 C 1.35142 * 119.18359 * 179.97438 * 10 9 7
12 12 N 1.48020 * 120.50935 * 180.02562 * 11 10 9
13 13 O 1.31694 * 119.99786 * 0.02562 * 12 11 10
14 14 O 1.31698 * 120.00163 * 180.02562 * 12 11 10
15 15 C 1.41369 * 118.98220 * 0.02562 * 11 10 9
16 16 O 1.35058 * 120.13338 * 180.02562 * 15 11 10
17 17 N 1.32314 * 119.72869 * 359.97438 * 15 11 10
18 18 C 1.33337 * 120.80352 * 359.97438 * 17 15 11
19 19 O 1.21824 * 119.46913 * 180.02562 * 18 17 15
20 20 H 0.96994 * 120.00150 * 0.02562 * 1 2 3
21 21 H 1.07991 * 120.41191 * 0.27367 * 10 9 7
22 22 H 0.96703 * 113.99622 * 179.97438 * 16 15 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.2943 0.0000 0.0000
3 14 2.2283 1.6177 0.0000
4 1 3.6883 1.3463 0.0006
5 1 1.8697 2.3963 -1.2126
6 1 1.8695 2.3965 1.2124
7 6 2.0268 -1.2688 0.0006
8 1 3.0799 -1.2843 0.2397
9 7 1.3889 -2.4126 -0.2961
10 6 0.2882 -2.3886 -1.1140
11 6 -0.3427 -3.5480 -1.4039
12 7 -1.5330 -3.5561 -2.2839
13 8 -1.9844 -2.4278 -2.7913
14 8 -2.1405 -4.6917 -2.5593
15 6 0.1514 -4.7529 -0.8538
16 8 -0.4610 -5.9249 -1.1286
17 7 1.2167 -4.7278 -0.0695
18 6 1.8324 -3.5784 0.2093
19 8 2.8117 -3.5835 0.9339
20 1 -0.4850 0.8400 -0.0004
21 1 -0.0670 -1.4554 -1.5253
22 1 -0.0495 -6.6918 -0.7071
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000082615219.mol2 22
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:38:51
Heat of formation + Delta-G solvation = -34.500189 kcal
Electronic energy + Delta-G solvation = -15585.663422 eV
Core-core repulsion = 12531.558548 eV
Total energy + Delta-G solvation = -3054.104874 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 227.042 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-43.10357 -40.20446 -39.26672 -38.13469 -36.41572 -35.09046 -34.61183 -32.75861
-28.31030 -27.15533 -25.80936 -23.87343 -21.40747 -20.88613 -19.58731 -19.09885
-18.28056 -17.97500 -17.53889 -16.72896 -16.53243 -16.10509 -15.37264 -15.21726
-14.89977 -14.18198 -13.89268 -13.23664 -12.77931 -12.48049 -12.12945 -12.11024
-11.86851 -11.72855 -11.60100 -11.28471 -11.23206 -10.32533 -9.36477 -6.96299
-1.39753 -0.26146 0.33343 0.53662 1.26090 1.34312 1.56651 1.76248
2.01240 2.10686 2.13475 2.65181 3.09685 3.64956 3.99496 4.34938
4.43306 4.73540 5.01418 5.41192 5.72055 5.95539 6.05286 6.15185
6.64960 6.89210 7.58562
Molecular weight = 227.04amu
Principal moments of inertia in cm(-1)
A = 0.029901 B = 0.011234 C = 0.008361
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 936.209450 B = 2491.741974 C = 3348.003448
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.773 5.773
2 C 0.024 3.976
3 Si 1.031 2.969
4 H -0.245 1.245
5 H -0.248 1.248
6 H -0.255 1.255
7 C -0.314 4.314
8 H 0.150 0.850
9 N -0.277 5.277
10 C 0.103 3.897
11 C -0.172 4.172
12 N 0.047 4.953
13 O -0.282 6.282
14 O -0.233 6.233
15 C 0.464 3.536
16 O -0.418 6.418
17 N -0.623 5.623
18 C 0.618 3.382
19 O -0.554 6.554
20 H 0.329 0.671
21 H 0.196 0.804
22 H 0.431 0.569
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.051 2.935 -0.431 3.607
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.397 5.397
2 C -0.200 4.200
3 Si 0.845 3.155
4 H -0.168 1.168
5 H -0.171 1.171
6 H -0.179 1.179
7 C -0.450 4.450
8 H 0.168 0.832
9 N 0.037 4.963
10 C -0.047 4.047
11 C -0.277 4.277
12 N 0.488 4.512
13 O -0.445 6.445
14 O -0.409 6.409
15 C 0.269 3.731
16 O -0.214 6.214
17 N -0.388 5.388
18 C 0.323 3.677
19 O -0.431 6.431
20 H 0.144 0.856
21 H 0.212 0.788
22 H 0.291 0.709
Dipole moment (debyes) X Y Z Total
from point charges 2.796 2.610 0.378 3.843
hybrid contribution -0.479 0.508 -0.098 0.705
sum 2.316 3.118 0.280 3.895
Atomic orbital electron populations
1.68779 1.10022 1.35432 1.25476 1.28731 0.96094 1.04339 0.90867
0.84365 0.79211 0.71649 0.80272 1.16774 1.17124 1.17852 1.22692
0.97676 0.82189 1.42400 0.83247 1.42102 1.18566 1.10396 1.25264
1.21414 0.92615 0.98948 0.91760 1.19134 0.98290 0.94127 1.16129
1.49586 1.00450 1.01936 0.99179 1.96182 1.72054 1.16811 1.59469
1.96180 1.60695 1.15340 1.68653 1.19614 0.84546 0.85589 0.83387
1.85209 1.52696 1.15133 1.68388 1.69666 1.15100 1.25478 1.28532
1.18074 0.86435 0.80808 0.82431 1.90828 1.27241 1.85769 1.39299
0.85632 0.78782 0.70893
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 19.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.77 -30.69 11.04 23.20 0.26 -30.43 14
2 C 0.02 0.90 5.25 87.20 0.46 1.35 14
3 Si 1.03 27.17 29.66 68.60 2.03 29.20 14
4 H -0.25 -6.36 7.11 99.48 0.71 -5.66 14
5 H -0.25 -6.14 7.11 99.48 0.71 -5.43 14
6 H -0.25 -6.45 7.11 99.48 0.71 -5.74 14
7 C -0.31 -13.52 9.35 86.48 0.81 -12.71 14
8 H 0.15 6.30 7.54 -2.91 -0.02 6.28 14
9 N -0.28 -12.85 2.71 -477.80 -1.29 -14.14 14
10 C 0.10 4.68 8.74 83.15 0.73 5.40 14
11 C -0.17 -7.82 6.90 36.43 0.25 -7.57 14
12 N 0.05 2.21 4.98 -46.32 -0.23 1.98 14
13 O -0.28 -13.80 19.17 3.52 0.07 -13.73 14
14 O -0.23 -10.97 18.03 10.65 0.19 -10.78 14
15 C 0.46 19.25 7.91 85.39 0.68 19.93 14
16 O -0.42 -14.18 11.62 -62.76 -0.73 -14.91 14
17 N -0.62 -27.59 10.39 -438.61 -4.56 -32.15 14
18 C 0.62 30.16 8.28 179.56 1.49 31.65 14
19 O -0.55 -29.20 16.85 -4.74 -0.08 -29.28 14
20 H 0.33 11.17 8.26 -92.71 -0.77 10.41 14
21 H 0.20 8.85 5.62 -2.92 -0.02 8.84 14
22 H 0.43 9.64 8.98 -74.06 -0.66 8.97 14
Total: -1.00 -59.26 222.60 0.72 -58.54
By element:
Atomic # 1 Polarization: 17.01 SS G_CDS: 0.65 Total: 17.66 kcal
Atomic # 6 Polarization: 33.64 SS G_CDS: 4.41 Total: 38.04 kcal
Atomic # 7 Polarization: -68.91 SS G_CDS: -5.83 Total: -74.74 kcal
Atomic # 8 Polarization: -68.16 SS G_CDS: -0.55 Total: -68.71 kcal
Atomic # 14 Polarization: 27.17 SS G_CDS: 2.03 Total: 29.20 kcal
Total: -59.26 0.72 -58.54 kcal
The number of atoms in the molecule is 22
The average number of expansion shells was 14.00
The maximum number of expansion shells was 14
The minimum number of expansion shells was 14
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000082615219.mol2 22
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 24.038 kcal
(2) G-P(sol) polarization free energy of solvation -59.255 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.217 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.717 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.538 kcal
(6) G-S(sol) free energy of system = (1) + (5) -34.500 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds