Wall clock time and date at job start Mon Mar 30 2020 03:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29431 * 1 3 3 Si 1.86797 * 120.00053 * 2 1 4 4 H 1.48499 * 109.47035 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47134 * 299.99263 * 3 2 1 6 6 H 1.48498 * 109.47221 * 59.99642 * 3 2 1 7 7 C 1.46511 * 119.99820 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00078 * 194.81309 * 7 2 1 9 9 N 1.34280 * 120.00357 * 14.80897 * 7 2 1 10 10 C 1.37150 * 119.87567 * 27.55820 * 9 7 2 11 11 C 1.35142 * 119.18359 * 179.97438 * 10 9 7 12 12 N 1.48020 * 120.50935 * 180.02562 * 11 10 9 13 13 O 1.31694 * 119.99786 * 0.02562 * 12 11 10 14 14 O 1.31698 * 120.00163 * 180.02562 * 12 11 10 15 15 C 1.41369 * 118.98220 * 0.02562 * 11 10 9 16 16 O 1.35058 * 120.13338 * 180.02562 * 15 11 10 17 17 N 1.32314 * 119.72869 * 359.97438 * 15 11 10 18 18 C 1.33337 * 120.80352 * 359.97438 * 17 15 11 19 19 O 1.21824 * 119.46913 * 180.02562 * 18 17 15 20 20 H 0.96994 * 120.00150 * 0.02562 * 1 2 3 21 21 H 1.07991 * 120.41191 * 0.27367 * 10 9 7 22 22 H 0.96703 * 113.99622 * 179.97438 * 16 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2943 0.0000 0.0000 3 14 2.2283 1.6177 0.0000 4 1 3.6883 1.3463 0.0006 5 1 1.8697 2.3963 -1.2126 6 1 1.8695 2.3965 1.2124 7 6 2.0268 -1.2688 0.0006 8 1 3.0799 -1.2843 0.2397 9 7 1.3889 -2.4126 -0.2961 10 6 0.2882 -2.3886 -1.1140 11 6 -0.3427 -3.5480 -1.4039 12 7 -1.5330 -3.5561 -2.2839 13 8 -1.9844 -2.4278 -2.7913 14 8 -2.1405 -4.6917 -2.5593 15 6 0.1514 -4.7529 -0.8538 16 8 -0.4610 -5.9249 -1.1286 17 7 1.2167 -4.7278 -0.0695 18 6 1.8324 -3.5784 0.2093 19 8 2.8117 -3.5835 0.9339 20 1 -0.4850 0.8400 -0.0004 21 1 -0.0670 -1.4554 -1.5253 22 1 -0.0495 -6.6918 -0.7071 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082615219.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:51 Heat of formation + Delta-G solvation = -34.500189 kcal Electronic energy + Delta-G solvation = -15585.663422 eV Core-core repulsion = 12531.558548 eV Total energy + Delta-G solvation = -3054.104874 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.042 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.10357 -40.20446 -39.26672 -38.13469 -36.41572 -35.09046 -34.61183 -32.75861 -28.31030 -27.15533 -25.80936 -23.87343 -21.40747 -20.88613 -19.58731 -19.09885 -18.28056 -17.97500 -17.53889 -16.72896 -16.53243 -16.10509 -15.37264 -15.21726 -14.89977 -14.18198 -13.89268 -13.23664 -12.77931 -12.48049 -12.12945 -12.11024 -11.86851 -11.72855 -11.60100 -11.28471 -11.23206 -10.32533 -9.36477 -6.96299 -1.39753 -0.26146 0.33343 0.53662 1.26090 1.34312 1.56651 1.76248 2.01240 2.10686 2.13475 2.65181 3.09685 3.64956 3.99496 4.34938 4.43306 4.73540 5.01418 5.41192 5.72055 5.95539 6.05286 6.15185 6.64960 6.89210 7.58562 Molecular weight = 227.04amu Principal moments of inertia in cm(-1) A = 0.029901 B = 0.011234 C = 0.008361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.209450 B = 2491.741974 C = 3348.003448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.024 3.976 3 Si 1.031 2.969 4 H -0.245 1.245 5 H -0.248 1.248 6 H -0.255 1.255 7 C -0.314 4.314 8 H 0.150 0.850 9 N -0.277 5.277 10 C 0.103 3.897 11 C -0.172 4.172 12 N 0.047 4.953 13 O -0.282 6.282 14 O -0.233 6.233 15 C 0.464 3.536 16 O -0.418 6.418 17 N -0.623 5.623 18 C 0.618 3.382 19 O -0.554 6.554 20 H 0.329 0.671 21 H 0.196 0.804 22 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.051 2.935 -0.431 3.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.200 4.200 3 Si 0.845 3.155 4 H -0.168 1.168 5 H -0.171 1.171 6 H -0.179 1.179 7 C -0.450 4.450 8 H 0.168 0.832 9 N 0.037 4.963 10 C -0.047 4.047 11 C -0.277 4.277 12 N 0.488 4.512 13 O -0.445 6.445 14 O -0.409 6.409 15 C 0.269 3.731 16 O -0.214 6.214 17 N -0.388 5.388 18 C 0.323 3.677 19 O -0.431 6.431 20 H 0.144 0.856 21 H 0.212 0.788 22 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 2.796 2.610 0.378 3.843 hybrid contribution -0.479 0.508 -0.098 0.705 sum 2.316 3.118 0.280 3.895 Atomic orbital electron populations 1.68779 1.10022 1.35432 1.25476 1.28731 0.96094 1.04339 0.90867 0.84365 0.79211 0.71649 0.80272 1.16774 1.17124 1.17852 1.22692 0.97676 0.82189 1.42400 0.83247 1.42102 1.18566 1.10396 1.25264 1.21414 0.92615 0.98948 0.91760 1.19134 0.98290 0.94127 1.16129 1.49586 1.00450 1.01936 0.99179 1.96182 1.72054 1.16811 1.59469 1.96180 1.60695 1.15340 1.68653 1.19614 0.84546 0.85589 0.83387 1.85209 1.52696 1.15133 1.68388 1.69666 1.15100 1.25478 1.28532 1.18074 0.86435 0.80808 0.82431 1.90828 1.27241 1.85769 1.39299 0.85632 0.78782 0.70893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -30.69 11.04 23.20 0.26 -30.43 14 2 C 0.02 0.90 5.25 87.20 0.46 1.35 14 3 Si 1.03 27.17 29.66 68.60 2.03 29.20 14 4 H -0.25 -6.36 7.11 99.48 0.71 -5.66 14 5 H -0.25 -6.14 7.11 99.48 0.71 -5.43 14 6 H -0.25 -6.45 7.11 99.48 0.71 -5.74 14 7 C -0.31 -13.52 9.35 86.48 0.81 -12.71 14 8 H 0.15 6.30 7.54 -2.91 -0.02 6.28 14 9 N -0.28 -12.85 2.71 -477.80 -1.29 -14.14 14 10 C 0.10 4.68 8.74 83.15 0.73 5.40 14 11 C -0.17 -7.82 6.90 36.43 0.25 -7.57 14 12 N 0.05 2.21 4.98 -46.32 -0.23 1.98 14 13 O -0.28 -13.80 19.17 3.52 0.07 -13.73 14 14 O -0.23 -10.97 18.03 10.65 0.19 -10.78 14 15 C 0.46 19.25 7.91 85.39 0.68 19.93 14 16 O -0.42 -14.18 11.62 -62.76 -0.73 -14.91 14 17 N -0.62 -27.59 10.39 -438.61 -4.56 -32.15 14 18 C 0.62 30.16 8.28 179.56 1.49 31.65 14 19 O -0.55 -29.20 16.85 -4.74 -0.08 -29.28 14 20 H 0.33 11.17 8.26 -92.71 -0.77 10.41 14 21 H 0.20 8.85 5.62 -2.92 -0.02 8.84 14 22 H 0.43 9.64 8.98 -74.06 -0.66 8.97 14 Total: -1.00 -59.26 222.60 0.72 -58.54 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.65 Total: 17.66 kcal Atomic # 6 Polarization: 33.64 SS G_CDS: 4.41 Total: 38.04 kcal Atomic # 7 Polarization: -68.91 SS G_CDS: -5.83 Total: -74.74 kcal Atomic # 8 Polarization: -68.16 SS G_CDS: -0.55 Total: -68.71 kcal Atomic # 14 Polarization: 27.17 SS G_CDS: 2.03 Total: 29.20 kcal Total: -59.26 0.72 -58.54 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082615219.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.038 kcal (2) G-P(sol) polarization free energy of solvation -59.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds