Wall clock time and date at job start Mon Mar 30 2020 03:51:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31553 * 1
3 3 Si 1.86797 * 119.99975 * 2 1
4 4 H 1.48504 * 109.47245 * 179.97438 * 3 2 1
5 5 H 1.48500 * 109.47184 * 299.99983 * 3 2 1
6 6 H 1.48500 * 109.47191 * 59.99915 * 3 2 1
7 7 C 1.38652 * 120.00112 * 179.97438 * 2 1 3
8 8 H 1.08000 * 120.00244 * 180.02562 * 7 2 1
9 9 O 1.34830 * 120.00086 * 359.97438 * 7 2 1
10 10 C 1.35755 * 117.00503 * 185.06312 * 9 7 2
11 11 C 1.38877 * 120.05665 * 354.40474 * 10 9 7
12 12 C 1.38194 * 119.91527 * 179.97438 * 11 10 9
13 13 Cl 1.73605 * 119.97836 * 180.02562 * 12 11 10
14 14 C 1.38439 * 120.04320 * 0.02562 * 12 11 10
15 15 C 1.38255 * 120.12684 * 359.97438 * 14 12 11
16 16 C 1.38134 * 120.08093 * 0.25678 * 15 14 12
17 17 C 1.50695 * 120.02390 * 179.72362 * 16 15 14
18 18 N 1.46905 * 109.47211 * 259.99811 * 17 16 15
19 19 H 0.97000 * 120.00226 * 359.97438 * 1 2 3
20 20 H 1.07997 * 120.04395 * 359.97438 * 11 10 9
21 21 H 1.07999 * 119.93830 * 179.97438 * 14 12 11
22 22 H 1.08001 * 119.96455 * 179.97438 * 15 14 12
23 23 H 1.09005 * 109.47206 * 19.99389 * 17 16 15
24 24 H 1.09001 * 109.47564 * 139.99502 * 17 16 15
25 25 H 1.00904 * 110.99768 * 56.04836 * 18 17 16
26 26 H 1.00901 * 111.00069 * 179.97438 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3155 0.0000 0.0000
3 14 2.2495 1.6177 0.0000
4 1 3.7096 1.3464 0.0006
5 1 1.8908 2.3964 -1.2125
6 1 1.8908 2.3964 1.2125
7 6 2.0088 -1.2007 0.0005
8 1 3.0888 -1.2008 0.0010
9 8 1.3347 -2.3684 0.0016
10 6 2.0700 -3.5046 0.1088
11 6 3.4571 -3.4394 0.0941
12 6 4.2028 -4.5977 0.2040
13 17 5.9369 -4.5180 0.1865
14 6 3.5677 -5.8216 0.3280
15 6 2.1869 -5.8886 0.3428
16 6 1.4365 -4.7345 0.2286
17 6 -0.0686 -4.8096 0.2386
18 7 -0.5720 -4.7308 -1.1392
19 1 -0.4850 0.8400 0.0004
20 1 3.9526 -2.4847 -0.0031
21 1 4.1521 -6.7258 0.4134
22 1 1.6942 -6.8448 0.4393
23 1 -0.3823 -5.7524 0.6867
24 1 -0.4700 -3.9796 0.8201
25 1 -0.1639 -5.4519 -1.7151
26 1 -1.5797 -4.7795 -1.1594
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000082638063.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:51:39
Heat of formation + Delta-G solvation = -13.706968 kcal
Electronic energy + Delta-G solvation = -13316.945958 eV
Core-core repulsion = 10807.992254 eV
Total energy + Delta-G solvation = -2508.953704 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 227.045 amu
Computer time = 0.19 seconds
Orbital eigenvalues (eV)
-39.26865 -36.75042 -35.86155 -33.97844 -32.30956 -29.81533 -28.93217 -25.44277
-24.19253 -21.78300 -20.53811 -18.09165 -17.09210 -15.53798 -15.17369 -14.90637
-14.31335 -14.10968 -13.70439 -13.34652 -12.84025 -12.66912 -12.29048 -11.96761
-11.77638 -11.11966 -10.99558 -10.68825 -10.47338 -10.43834 -10.35500 -9.46145
-8.87344 -8.15713 -8.01206 -7.31451 -6.47873 -4.05973 1.87894 2.21207
2.69484 3.12039 3.14113 3.19545 3.94809 4.33652 5.03362 5.16671
5.29626 5.49355 5.56310 5.75985 5.88634 6.17099 6.35357 6.46178
6.64363 6.93118 6.94936 7.11621 7.30645 7.59805 7.70329 7.94525
7.98819 8.96785 9.64844 10.68587
Molecular weight = 227.05amu
Principal moments of inertia in cm(-1)
A = 0.021007 B = 0.010610 C = 0.007207
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1332.582679 B = 2638.265098 C = 3884.155961
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.851 5.851
2 C 0.044 3.956
3 Si 0.939 3.061
4 H -0.266 1.266
5 H -0.275 1.275
6 H -0.275 1.275
7 C -0.396 4.396
8 H 0.092 0.908
9 O -0.148 6.148
10 C 0.181 3.819
11 C -0.232 4.232
12 C 0.023 3.977
13 Cl -0.100 7.100
14 C -0.212 4.212
15 C -0.061 4.061
16 C -0.161 4.161
17 C 0.124 3.876
18 N -0.834 5.834
19 H 0.270 0.730
20 H 0.137 0.863
21 H 0.116 0.884
22 H 0.118 0.882
23 H 0.019 0.981
24 H 0.083 0.917
25 H 0.332 0.668
26 H 0.335 0.665
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.439 -7.962 0.465 8.685
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.485 5.485
2 C -0.162 4.162
3 Si 0.764 3.236
4 H -0.190 1.190
5 H -0.200 1.200
6 H -0.201 1.201
7 C -0.472 4.472
8 H 0.110 0.890
9 O -0.049 6.049
10 C 0.124 3.876
11 C -0.252 4.252
12 C -0.004 4.004
13 Cl -0.071 7.071
14 C -0.232 4.232
15 C -0.080 4.080
16 C -0.162 4.162
17 C -0.006 4.006
18 N -0.364 5.364
19 H 0.080 0.920
20 H 0.155 0.845
21 H 0.134 0.866
22 H 0.136 0.864
23 H 0.037 0.963
24 H 0.101 0.899
25 H 0.144 0.856
26 H 0.147 0.853
Dipole moment (debyes) X Y Z Total
from point charges 3.463 -6.978 0.437 7.802
hybrid contribution 0.413 -0.131 0.155 0.460
sum 3.876 -7.108 0.592 8.118
Atomic orbital electron populations
1.70060 1.05913 1.27618 1.44909 1.25277 0.95822 0.98802 0.96288
0.85672 0.79304 0.80350 0.78300 1.18993 1.20047 1.20091 1.21431
0.91876 0.80947 1.52933 0.89036 1.84067 1.33447 1.11017 1.76406
1.18915 0.88872 0.88147 0.91635 1.21014 0.93696 0.98015 1.12492
1.20583 0.82309 0.94997 1.02486 1.98306 1.12863 1.98855 1.97083
1.20368 0.94272 0.95503 1.13048 1.20474 0.92705 0.96524 0.98304
1.18958 0.95152 0.90913 1.11224 1.20344 0.91015 0.99261 0.90002
1.58555 1.10806 1.56030 1.10961 0.92014 0.84504 0.86638 0.86446
0.96258 0.89910 0.85649 0.85289
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.85 -24.48 13.67 55.48 0.76 -23.72 15
2 C 0.04 1.18 5.49 -17.52 -0.10 1.09 15
3 Si 0.94 20.42 29.55 -169.99 -5.02 15.40 15
4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 15
5 H -0.27 -5.87 7.11 56.52 0.40 -5.47 15
6 H -0.28 -5.85 7.11 56.52 0.40 -5.45 15
7 C -0.40 -10.93 9.49 30.89 0.29 -10.63 15
8 H 0.09 2.38 5.20 -52.49 -0.27 2.10 15
9 O -0.15 -4.10 8.99 0.03 0.00 -4.10 15
10 C 0.18 4.30 6.62 -39.11 -0.26 4.04 15
11 C -0.23 -5.14 8.95 -39.36 -0.35 -5.49 15
12 C 0.02 0.44 6.32 -39.52 -0.25 0.19 15
13 Cl -0.10 -1.69 28.95 -51.86 -1.50 -3.19 15
14 C -0.21 -3.72 9.83 -39.50 -0.39 -4.11 15
15 C -0.06 -1.05 9.66 -39.61 -0.38 -1.44 15
16 C -0.16 -3.25 5.41 -104.43 -0.56 -3.82 15
17 C 0.12 2.28 6.58 -4.98 -0.03 2.25 15
18 N -0.83 -14.64 9.61 -11.41 -0.11 -14.75 15
19 H 0.27 7.12 8.31 -40.82 -0.34 6.78 15
20 H 0.14 3.10 5.64 -52.49 -0.30 2.80 15
21 H 0.12 1.74 8.06 -52.49 -0.42 1.32 15
22 H 0.12 1.64 8.04 -52.49 -0.42 1.22 15
23 H 0.02 0.30 8.00 -51.93 -0.42 -0.12 15
24 H 0.08 1.74 7.85 -51.93 -0.41 1.34 15
25 H 0.33 5.13 8.99 -39.29 -0.35 4.78 15
26 H 0.33 5.00 9.08 -39.29 -0.36 4.64 15
LS Contribution 249.61 15.07 3.76 3.76
Total: -1.00 -29.53 249.61 -6.23 -35.76
By element:
Atomic # 1 Polarization: 10.83 SS G_CDS: -2.08 Total: 8.75 kcal
Atomic # 6 Polarization: -15.88 SS G_CDS: -2.03 Total: -17.91 kcal
Atomic # 7 Polarization: -39.12 SS G_CDS: 0.65 Total: -38.47 kcal
Atomic # 8 Polarization: -4.10 SS G_CDS: 0.00 Total: -4.10 kcal
Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal
Atomic # 17 Polarization: -1.69 SS G_CDS: -1.50 Total: -3.19 kcal
Total LS contribution 3.76 Total: 3.76 kcal
Total: -29.53 -6.23 -35.76 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000082638063.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 22.055 kcal
(2) G-P(sol) polarization free energy of solvation -29.534 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.479 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.227 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.762 kcal
(6) G-S(sol) free energy of system = (1) + (5) -13.707 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.19 seconds