Wall clock time and date at job start Mon Mar 30 2020 03:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86797 * 119.99975 * 2 1 4 4 H 1.48504 * 109.47245 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47184 * 299.99983 * 3 2 1 6 6 H 1.48500 * 109.47191 * 59.99915 * 3 2 1 7 7 C 1.38652 * 120.00112 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00244 * 180.02562 * 7 2 1 9 9 O 1.34830 * 120.00086 * 359.97438 * 7 2 1 10 10 C 1.35755 * 117.00503 * 185.06312 * 9 7 2 11 11 C 1.38877 * 120.05665 * 354.40474 * 10 9 7 12 12 C 1.38194 * 119.91527 * 179.97438 * 11 10 9 13 13 Cl 1.73605 * 119.97836 * 180.02562 * 12 11 10 14 14 C 1.38439 * 120.04320 * 0.02562 * 12 11 10 15 15 C 1.38255 * 120.12684 * 359.97438 * 14 12 11 16 16 C 1.38134 * 120.08093 * 0.25678 * 15 14 12 17 17 C 1.50695 * 120.02390 * 179.72362 * 16 15 14 18 18 N 1.46905 * 109.47211 * 259.99811 * 17 16 15 19 19 H 0.97000 * 120.00226 * 359.97438 * 1 2 3 20 20 H 1.07997 * 120.04395 * 359.97438 * 11 10 9 21 21 H 1.07999 * 119.93830 * 179.97438 * 14 12 11 22 22 H 1.08001 * 119.96455 * 179.97438 * 15 14 12 23 23 H 1.09005 * 109.47206 * 19.99389 * 17 16 15 24 24 H 1.09001 * 109.47564 * 139.99502 * 17 16 15 25 25 H 1.00904 * 110.99768 * 56.04836 * 18 17 16 26 26 H 1.00901 * 111.00069 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7096 1.3464 0.0006 5 1 1.8908 2.3964 -1.2125 6 1 1.8908 2.3964 1.2125 7 6 2.0088 -1.2007 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3684 0.0016 10 6 2.0700 -3.5046 0.1088 11 6 3.4571 -3.4394 0.0941 12 6 4.2028 -4.5977 0.2040 13 17 5.9369 -4.5180 0.1865 14 6 3.5677 -5.8216 0.3280 15 6 2.1869 -5.8886 0.3428 16 6 1.4365 -4.7345 0.2286 17 6 -0.0686 -4.8096 0.2386 18 7 -0.5720 -4.7308 -1.1392 19 1 -0.4850 0.8400 0.0004 20 1 3.9526 -2.4847 -0.0031 21 1 4.1521 -6.7258 0.4134 22 1 1.6942 -6.8448 0.4393 23 1 -0.3823 -5.7524 0.6867 24 1 -0.4700 -3.9796 0.8201 25 1 -0.1639 -5.4519 -1.7151 26 1 -1.5797 -4.7795 -1.1594 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082638063.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:39 Heat of formation + Delta-G solvation = -13.706968 kcal Electronic energy + Delta-G solvation = -13316.945958 eV Core-core repulsion = 10807.992254 eV Total energy + Delta-G solvation = -2508.953704 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.045 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.26865 -36.75042 -35.86155 -33.97844 -32.30956 -29.81533 -28.93217 -25.44277 -24.19253 -21.78300 -20.53811 -18.09165 -17.09210 -15.53798 -15.17369 -14.90637 -14.31335 -14.10968 -13.70439 -13.34652 -12.84025 -12.66912 -12.29048 -11.96761 -11.77638 -11.11966 -10.99558 -10.68825 -10.47338 -10.43834 -10.35500 -9.46145 -8.87344 -8.15713 -8.01206 -7.31451 -6.47873 -4.05973 1.87894 2.21207 2.69484 3.12039 3.14113 3.19545 3.94809 4.33652 5.03362 5.16671 5.29626 5.49355 5.56310 5.75985 5.88634 6.17099 6.35357 6.46178 6.64363 6.93118 6.94936 7.11621 7.30645 7.59805 7.70329 7.94525 7.98819 8.96785 9.64844 10.68587 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.021007 B = 0.010610 C = 0.007207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.582679 B = 2638.265098 C = 3884.155961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.044 3.956 3 Si 0.939 3.061 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.396 4.396 8 H 0.092 0.908 9 O -0.148 6.148 10 C 0.181 3.819 11 C -0.232 4.232 12 C 0.023 3.977 13 Cl -0.100 7.100 14 C -0.212 4.212 15 C -0.061 4.061 16 C -0.161 4.161 17 C 0.124 3.876 18 N -0.834 5.834 19 H 0.270 0.730 20 H 0.137 0.863 21 H 0.116 0.884 22 H 0.118 0.882 23 H 0.019 0.981 24 H 0.083 0.917 25 H 0.332 0.668 26 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.439 -7.962 0.465 8.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.162 4.162 3 Si 0.764 3.236 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.472 4.472 8 H 0.110 0.890 9 O -0.049 6.049 10 C 0.124 3.876 11 C -0.252 4.252 12 C -0.004 4.004 13 Cl -0.071 7.071 14 C -0.232 4.232 15 C -0.080 4.080 16 C -0.162 4.162 17 C -0.006 4.006 18 N -0.364 5.364 19 H 0.080 0.920 20 H 0.155 0.845 21 H 0.134 0.866 22 H 0.136 0.864 23 H 0.037 0.963 24 H 0.101 0.899 25 H 0.144 0.856 26 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.463 -6.978 0.437 7.802 hybrid contribution 0.413 -0.131 0.155 0.460 sum 3.876 -7.108 0.592 8.118 Atomic orbital electron populations 1.70060 1.05913 1.27618 1.44909 1.25277 0.95822 0.98802 0.96288 0.85672 0.79304 0.80350 0.78300 1.18993 1.20047 1.20091 1.21431 0.91876 0.80947 1.52933 0.89036 1.84067 1.33447 1.11017 1.76406 1.18915 0.88872 0.88147 0.91635 1.21014 0.93696 0.98015 1.12492 1.20583 0.82309 0.94997 1.02486 1.98306 1.12863 1.98855 1.97083 1.20368 0.94272 0.95503 1.13048 1.20474 0.92705 0.96524 0.98304 1.18958 0.95152 0.90913 1.11224 1.20344 0.91015 0.99261 0.90002 1.58555 1.10806 1.56030 1.10961 0.92014 0.84504 0.86638 0.86446 0.96258 0.89910 0.85649 0.85289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.48 13.67 55.48 0.76 -23.72 15 2 C 0.04 1.18 5.49 -17.52 -0.10 1.09 15 3 Si 0.94 20.42 29.55 -169.99 -5.02 15.40 15 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 15 5 H -0.27 -5.87 7.11 56.52 0.40 -5.47 15 6 H -0.28 -5.85 7.11 56.52 0.40 -5.45 15 7 C -0.40 -10.93 9.49 30.89 0.29 -10.63 15 8 H 0.09 2.38 5.20 -52.49 -0.27 2.10 15 9 O -0.15 -4.10 8.99 0.03 0.00 -4.10 15 10 C 0.18 4.30 6.62 -39.11 -0.26 4.04 15 11 C -0.23 -5.14 8.95 -39.36 -0.35 -5.49 15 12 C 0.02 0.44 6.32 -39.52 -0.25 0.19 15 13 Cl -0.10 -1.69 28.95 -51.86 -1.50 -3.19 15 14 C -0.21 -3.72 9.83 -39.50 -0.39 -4.11 15 15 C -0.06 -1.05 9.66 -39.61 -0.38 -1.44 15 16 C -0.16 -3.25 5.41 -104.43 -0.56 -3.82 15 17 C 0.12 2.28 6.58 -4.98 -0.03 2.25 15 18 N -0.83 -14.64 9.61 -11.41 -0.11 -14.75 15 19 H 0.27 7.12 8.31 -40.82 -0.34 6.78 15 20 H 0.14 3.10 5.64 -52.49 -0.30 2.80 15 21 H 0.12 1.74 8.06 -52.49 -0.42 1.32 15 22 H 0.12 1.64 8.04 -52.49 -0.42 1.22 15 23 H 0.02 0.30 8.00 -51.93 -0.42 -0.12 15 24 H 0.08 1.74 7.85 -51.93 -0.41 1.34 15 25 H 0.33 5.13 8.99 -39.29 -0.35 4.78 15 26 H 0.33 5.00 9.08 -39.29 -0.36 4.64 15 LS Contribution 249.61 15.07 3.76 3.76 Total: -1.00 -29.53 249.61 -6.23 -35.76 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -2.08 Total: 8.75 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: -2.03 Total: -17.91 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.65 Total: -38.47 kcal Atomic # 8 Polarization: -4.10 SS G_CDS: 0.00 Total: -4.10 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 17 Polarization: -1.69 SS G_CDS: -1.50 Total: -3.19 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -29.53 -6.23 -35.76 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082638063.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.055 kcal (2) G-P(sol) polarization free energy of solvation -29.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds