Wall clock time and date at job start Mon Mar 30 2020 03:51:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31553 * 1
3 3 Si 1.86797 * 119.99975 * 2 1
4 4 H 1.48504 * 109.47245 * 179.97438 * 3 2 1
5 5 H 1.48500 * 109.47184 * 299.99983 * 3 2 1
6 6 H 1.48500 * 109.47191 * 59.99915 * 3 2 1
7 7 C 1.38652 * 120.00112 * 179.97438 * 2 1 3
8 8 H 1.08000 * 120.00244 * 180.02562 * 7 2 1
9 9 O 1.34830 * 120.00086 * 359.97438 * 7 2 1
10 10 C 1.35755 * 117.00503 * 185.06312 * 9 7 2
11 11 C 1.38877 * 120.05665 * 354.40474 * 10 9 7
12 12 C 1.38194 * 119.91527 * 179.97438 * 11 10 9
13 13 Cl 1.73605 * 119.97836 * 180.02562 * 12 11 10
14 14 C 1.38439 * 120.04320 * 0.02562 * 12 11 10
15 15 C 1.38255 * 120.12684 * 359.97438 * 14 12 11
16 16 C 1.38134 * 120.08093 * 0.25678 * 15 14 12
17 17 C 1.50695 * 120.02390 * 179.72362 * 16 15 14
18 18 N 1.46905 * 109.47211 * 259.99811 * 17 16 15
19 19 H 0.97000 * 120.00226 * 359.97438 * 1 2 3
20 20 H 1.07997 * 120.04395 * 359.97438 * 11 10 9
21 21 H 1.07999 * 119.93830 * 179.97438 * 14 12 11
22 22 H 1.08001 * 119.96455 * 179.97438 * 15 14 12
23 23 H 1.09005 * 109.47206 * 19.99389 * 17 16 15
24 24 H 1.09001 * 109.47564 * 139.99502 * 17 16 15
25 25 H 1.00904 * 110.99768 * 56.04836 * 18 17 16
26 26 H 1.00901 * 111.00069 * 179.97438 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3155 0.0000 0.0000
3 14 2.2495 1.6177 0.0000
4 1 3.7096 1.3464 0.0006
5 1 1.8908 2.3964 -1.2125
6 1 1.8908 2.3964 1.2125
7 6 2.0088 -1.2007 0.0005
8 1 3.0888 -1.2008 0.0010
9 8 1.3347 -2.3684 0.0016
10 6 2.0700 -3.5046 0.1088
11 6 3.4571 -3.4394 0.0941
12 6 4.2028 -4.5977 0.2040
13 17 5.9369 -4.5180 0.1865
14 6 3.5677 -5.8216 0.3280
15 6 2.1869 -5.8886 0.3428
16 6 1.4365 -4.7345 0.2286
17 6 -0.0686 -4.8096 0.2386
18 7 -0.5720 -4.7308 -1.1392
19 1 -0.4850 0.8400 0.0004
20 1 3.9526 -2.4847 -0.0031
21 1 4.1521 -6.7258 0.4134
22 1 1.6942 -6.8448 0.4393
23 1 -0.3823 -5.7524 0.6867
24 1 -0.4700 -3.9796 0.8201
25 1 -0.1639 -5.4519 -1.7151
26 1 -1.5797 -4.7795 -1.1594
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000082638063.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:51:39
Heat of formation + Delta-G solvation = -34.554317 kcal
Electronic energy + Delta-G solvation = -13317.849967 eV
Core-core repulsion = 10807.992254 eV
Total energy + Delta-G solvation = -2509.857713 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 227.045 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-40.94781 -38.42894 -37.35865 -35.44309 -34.26516 -31.36266 -30.56010 -27.39609
-25.69828 -23.45639 -22.10657 -19.90842 -18.85580 -17.06899 -16.79476 -16.58660
-15.92602 -15.74137 -15.35366 -14.96935 -14.48721 -14.16751 -13.85825 -13.61423
-13.48955 -12.80492 -12.61451 -12.23464 -12.10904 -11.95625 -11.82297 -11.31023
-10.79054 -9.67218 -9.39447 -9.01451 -8.45320 -6.12321 0.29931 0.62808
1.19604 1.35662 1.42748 1.52654 2.17656 2.70749 3.10331 3.48309
3.91545 3.99764 4.09549 4.26826 4.44113 4.66013 4.75193 4.89391
5.10359 5.13801 5.36979 5.45557 5.65604 5.99345 6.02925 6.39376
6.77431 6.98704 7.78082 8.76135
Molecular weight = 227.05amu
Principal moments of inertia in cm(-1)
A = 0.021007 B = 0.010610 C = 0.007207
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1332.582679 B = 2638.265098 C = 3884.155961
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.907 5.907
2 C -0.014 4.014
3 Si 1.011 2.989
4 H -0.256 1.256
5 H -0.268 1.268
6 H -0.267 1.267
7 C -0.418 4.418
8 H 0.095 0.905
9 O -0.196 6.196
10 C 0.145 3.855
11 C -0.248 4.248
12 C 0.012 3.988
13 Cl -0.076 7.076
14 C -0.187 4.187
15 C -0.049 4.049
16 C -0.165 4.165
17 C 0.128 3.872
18 N -0.853 5.853
19 H 0.272 0.728
20 H 0.120 0.880
21 H 0.155 0.845
22 H 0.166 0.834
23 H 0.062 0.938
24 H 0.044 0.956
25 H 0.345 0.655
26 H 0.348 0.652
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.839 -10.271 0.604 11.370
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.544 5.544
2 C -0.213 4.213
3 Si 0.831 3.169
4 H -0.180 1.180
5 H -0.193 1.193
6 H -0.192 1.192
7 C -0.494 4.494
8 H 0.112 0.888
9 O -0.100 6.100
10 C 0.092 3.908
11 C -0.268 4.268
12 C -0.015 4.015
13 Cl -0.047 7.047
14 C -0.206 4.206
15 C -0.067 4.067
16 C -0.167 4.167
17 C -0.002 4.002
18 N -0.386 5.386
19 H 0.081 0.919
20 H 0.138 0.862
21 H 0.172 0.828
22 H 0.184 0.816
23 H 0.079 0.921
24 H 0.063 0.937
25 H 0.158 0.842
26 H 0.162 0.838
Dipole moment (debyes) X Y Z Total
from point charges 4.896 -9.346 0.574 10.567
hybrid contribution 0.124 0.221 0.129 0.285
sum 5.020 -9.125 0.702 10.438
Atomic orbital electron populations
1.70187 1.07718 1.28584 1.47878 1.26431 0.96770 1.02318 0.95776
0.84634 0.78185 0.75417 0.78659 1.17985 1.19285 1.19184 1.21804
0.92268 0.81870 1.53453 0.88796 1.84046 1.34534 1.11809 1.79658
1.19541 0.89855 0.88541 0.92847 1.21013 0.93565 0.98647 1.13545
1.20740 0.83689 0.94807 1.02238 1.98313 1.10649 1.98848 1.96935
1.20934 0.94781 0.95934 1.08973 1.20996 0.92626 0.97268 0.95836
1.19416 0.96482 0.90628 1.10151 1.20250 0.89906 0.99725 0.90336
1.58424 1.12095 1.57158 1.10890 0.91872 0.86187 0.82776 0.81609
0.92057 0.93736 0.84151 0.83781
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -54.88 13.67 21.61 0.30 -54.58 15
2 C -0.01 -0.79 5.49 84.83 0.47 -0.32 15
3 Si 1.01 43.22 29.55 68.60 2.03 45.24 15
4 H -0.26 -10.34 7.11 99.48 0.71 -9.63 15
5 H -0.27 -10.99 7.11 99.48 0.71 -10.28 15
6 H -0.27 -10.89 7.11 99.48 0.71 -10.18 15
7 C -0.42 -24.27 9.49 67.92 0.64 -23.63 15
8 H 0.09 5.15 5.20 -2.91 -0.02 5.13 15
9 O -0.20 -11.44 8.99 -22.80 -0.20 -11.64 15
10 C 0.15 7.04 6.62 22.57 0.15 7.19 15
11 C -0.25 -11.04 8.95 22.41 0.20 -10.84 15
12 C 0.01 0.44 6.32 22.31 0.14 0.58 15
13 Cl -0.08 -2.39 28.95 -2.72 -0.08 -2.47 15
14 C -0.19 -5.70 9.83 22.32 0.22 -5.49 15
15 C -0.05 -1.47 9.66 22.25 0.21 -1.25 15
16 C -0.17 -6.45 5.41 -19.74 -0.11 -6.56 15
17 C 0.13 4.59 6.58 85.55 0.56 5.16 15
18 N -0.85 -29.32 9.61 -190.00 -1.83 -31.14 15
19 H 0.27 15.09 8.31 -92.71 -0.77 14.32 15
20 H 0.12 5.64 5.64 -2.91 -0.02 5.63 15
21 H 0.15 3.62 8.06 -2.91 -0.02 3.59 15
22 H 0.17 3.48 8.04 -2.91 -0.02 3.46 15
23 H 0.06 1.67 8.00 -2.38 -0.02 1.66 15
24 H 0.04 1.94 7.85 -2.39 -0.02 1.92 15
25 H 0.35 10.03 8.99 -89.69 -0.81 9.22 15
26 H 0.35 10.16 9.08 -89.69 -0.81 9.35 15
Total: -1.00 -67.89 249.61 2.32 -65.57
By element:
Atomic # 1 Polarization: 24.56 SS G_CDS: -0.39 Total: 24.18 kcal
Atomic # 6 Polarization: -37.65 SS G_CDS: 2.49 Total: -35.16 kcal
Atomic # 7 Polarization: -84.19 SS G_CDS: -1.53 Total: -85.72 kcal
Atomic # 8 Polarization: -11.44 SS G_CDS: -0.20 Total: -11.64 kcal
Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal
Atomic # 17 Polarization: -2.39 SS G_CDS: -0.08 Total: -2.47 kcal
Total: -67.89 2.32 -65.57 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000082638063.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 31.019 kcal
(2) G-P(sol) polarization free energy of solvation -67.892 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.873 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.318 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.573 kcal
(6) G-S(sol) free energy of system = (1) + (5) -34.554 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds