Wall clock time and date at job start Mon Mar 30 2020 02:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46893 * 109.47351 * 2 1 4 4 C 1.46898 * 111.00181 * 66.04636 * 3 2 1 5 5 C 1.46906 * 111.00116 * 190.00021 * 3 2 1 6 6 C 1.52991 * 109.47267 * 169.99837 * 5 3 2 7 7 N 1.46906 * 109.47267 * 180.02562 * 6 5 3 8 8 C 1.46893 * 111.00098 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47250 * 185.37571 * 8 7 6 10 10 C 1.50701 * 115.55139 * 294.80834 * 9 8 7 11 11 H 1.07998 * 119.99931 * 95.20118 * 10 9 8 12 12 C 1.37881 * 119.99675 * 274.92507 * 10 9 8 13 13 N 1.31509 * 120.00118 * 355.41870 * 12 10 9 14 14 Si 1.86797 * 119.99851 * 175.42112 * 12 10 9 15 15 H 1.48500 * 109.47305 * 59.99777 * 14 12 10 16 16 H 1.48502 * 109.46877 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47169 * 299.99984 * 14 12 10 18 18 C 1.53005 * 117.49771 * 80.47079 * 9 8 7 19 19 C 1.52998 * 117.50158 * 149.12935 * 9 8 7 20 20 H 1.08997 * 109.46720 * 59.99931 * 1 2 3 21 21 H 1.08997 * 109.47411 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46797 * 300.00282 * 1 2 3 23 23 H 1.09007 * 109.46822 * 239.99792 * 2 1 3 24 24 H 1.09006 * 109.46650 * 120.00384 * 2 1 3 25 25 H 1.09001 * 109.47055 * 183.95397 * 4 3 2 26 26 H 1.08993 * 109.46958 * 303.95266 * 4 3 2 27 27 H 1.08999 * 109.47245 * 63.95601 * 4 3 2 28 28 H 1.09007 * 109.46982 * 49.99816 * 5 3 2 29 29 H 1.08999 * 109.46878 * 290.00650 * 5 3 2 30 30 H 1.08998 * 109.47269 * 60.00114 * 6 5 3 31 31 H 1.08995 * 109.47367 * 299.99646 * 6 5 3 32 32 H 1.00901 * 110.99671 * 303.95659 * 7 6 5 33 33 H 1.09004 * 109.46845 * 65.38026 * 8 7 6 34 34 H 1.08997 * 109.47456 * 305.38043 * 8 7 6 35 35 H 0.96998 * 120.00611 * 185.00609 * 13 12 10 36 36 H 1.08998 * 117.50096 * 215.00821 * 18 9 8 37 37 H 1.08999 * 117.49296 * 0.02838 * 18 9 8 38 38 H 1.09004 * 117.49634 * 359.97438 * 19 9 8 39 39 H 1.08994 * 117.49846 * 144.97788 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6703 2.0669 1.2533 5 6 3.4686 1.4310 -0.2382 6 6 3.9000 2.8789 -0.4791 7 7 5.3488 2.9250 -0.7179 8 6 5.7999 4.3028 -0.9544 9 6 7.2830 4.2965 -1.3303 10 6 8.2253 3.8310 -0.2503 11 1 8.5473 2.8005 -0.2219 12 6 8.6808 4.7220 0.6983 13 7 8.3658 5.9957 0.6089 14 14 9.7453 4.1199 2.1102 15 1 10.9850 3.5070 1.5691 16 1 10.1013 5.2658 2.9852 17 1 8.9964 3.1085 2.8985 18 6 7.6435 3.9553 -2.7776 19 6 7.7773 5.3946 -2.2740 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 1.9826 3.1098 1.1987 26 1 0.5921 2.0179 1.4051 27 1 2.1771 1.5790 2.0859 28 1 3.7123 0.8288 -1.1135 29 1 3.9926 1.0357 0.6320 30 1 3.6564 3.4811 0.3961 31 1 3.3761 3.2741 -1.3494 32 1 5.8549 2.5047 0.0472 33 1 5.6572 4.8923 -0.0487 34 1 5.2208 4.7402 -1.7676 35 1 8.7447 6.6340 1.2333 36 1 8.5622 3.3942 -2.9485 37 1 6.8240 3.7358 -3.4619 38 1 7.0458 6.1213 -2.6274 39 1 8.7839 5.7807 -2.1134 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854209.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:42 Heat of formation + Delta-G solvation = 22.505510 kcal Electronic energy + Delta-G solvation = -15821.075709 eV Core-core repulsion = 13378.201076 eV Total energy + Delta-G solvation = -2442.874632 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.05896 -36.77925 -34.28849 -31.87378 -31.03430 -28.24773 -26.30807 -25.37138 -23.54430 -21.47890 -20.84997 -20.63110 -18.95049 -16.06671 -15.88367 -15.60578 -14.85834 -14.63360 -14.31360 -13.87504 -13.72335 -13.11803 -12.94028 -12.41666 -12.17625 -11.93302 -11.67273 -11.58308 -11.32441 -10.94871 -10.94044 -10.89738 -10.83178 -10.55452 -10.42484 -10.03722 -9.28705 -8.80422 -8.36814 -8.32202 -8.01047 -7.46255 -5.98695 -4.06131 3.29988 3.35449 3.37820 3.87657 4.41383 4.86864 5.09471 5.11356 5.21659 5.28618 5.34790 5.40613 5.55764 5.58946 5.67991 5.73099 5.82643 5.88312 5.97716 6.08970 6.19438 6.28115 6.35851 6.53967 6.62921 6.88344 6.89003 6.97626 7.08405 7.11583 7.25640 7.55432 7.66073 7.90949 8.02883 8.29971 8.53988 8.97372 9.59303 11.08442 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.029647 B = 0.005702 C = 0.005148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.215967 B = 4909.679382 C = 5437.213617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.050 3.950 3 N -0.543 5.543 4 C 0.018 3.982 5 C 0.059 3.941 6 C 0.063 3.937 7 N -0.681 5.681 8 C 0.109 3.891 9 C 0.046 3.954 10 C -0.492 4.492 11 H 0.059 0.941 12 C 0.069 3.931 13 N -0.880 5.880 14 Si 0.887 3.113 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.277 1.277 18 C -0.201 4.201 19 C -0.156 4.156 20 H 0.062 0.938 21 H 0.056 0.944 22 H 0.053 0.947 23 H 0.074 0.926 24 H 0.030 0.970 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.023 0.977 28 H 0.081 0.919 29 H 0.031 0.969 30 H 0.020 0.980 31 H 0.070 0.930 32 H 0.345 0.655 33 H 0.029 0.971 34 H 0.039 0.961 35 H 0.259 0.741 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.944 -7.861 0.258 14.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.078 4.078 3 N -0.268 5.268 4 C -0.130 4.130 5 C -0.069 4.069 6 C -0.067 4.067 7 N -0.313 5.313 8 C -0.020 4.020 9 C 0.045 3.955 10 C -0.530 4.530 11 H 0.077 0.923 12 C -0.134 4.134 13 N -0.517 5.517 14 Si 0.715 3.285 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.203 1.203 18 C -0.238 4.238 19 C -0.194 4.194 20 H 0.082 0.918 21 H 0.075 0.925 22 H 0.072 0.928 23 H 0.092 0.908 24 H 0.048 0.952 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.042 0.958 28 H 0.100 0.900 29 H 0.049 0.951 30 H 0.038 0.962 31 H 0.089 0.911 32 H 0.163 0.837 33 H 0.047 0.953 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.260 -7.578 -0.656 14.428 hybrid contribution 1.004 -0.190 2.402 2.610 sum -11.256 -7.769 1.745 13.787 Atomic orbital electron populations 1.21804 0.95098 1.01269 1.02422 1.22075 0.95885 0.89123 1.00716 1.61959 1.14620 1.15520 1.34684 1.22483 1.00948 0.99806 0.89740 1.22099 0.85848 0.98289 1.00702 1.21865 0.90686 0.94522 0.99625 1.60360 1.01843 1.20955 1.48159 1.21420 0.95773 0.86746 0.98101 1.18748 0.90971 0.97972 0.87822 1.20436 1.27318 0.95732 1.09511 0.92299 1.25007 0.95902 0.94963 0.97506 1.69995 1.43227 1.01259 1.37255 0.86743 0.80960 0.78201 0.82566 1.20281 1.21413 1.20301 1.22867 1.00980 0.99482 1.00476 1.22495 1.01313 0.89981 1.05602 0.91846 0.92521 0.92785 0.90761 0.95179 0.90987 0.91485 0.95838 0.90038 0.95072 0.96206 0.91150 0.83708 0.95252 0.94230 0.93098 0.90979 0.91748 0.92361 0.90027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.84 37.16 0.37 -0.97 16 2 C 0.05 0.54 5.68 -3.83 -0.02 0.52 16 3 N -0.54 -7.01 4.76 -242.92 -1.16 -8.17 16 4 C 0.02 0.22 9.13 60.06 0.55 0.77 16 5 C 0.06 0.85 5.22 -3.83 -0.02 0.83 16 6 C 0.06 1.06 5.60 -3.83 -0.02 1.04 16 7 N -0.68 -13.59 6.47 -113.79 -0.74 -14.33 16 8 C 0.11 2.47 5.54 -3.83 -0.02 2.45 16 9 C 0.05 1.14 1.65 -155.66 -0.26 0.88 16 10 C -0.49 -13.28 8.33 -34.44 -0.29 -13.56 16 11 H 0.06 1.59 7.82 -52.49 -0.41 1.18 16 12 C 0.07 1.88 5.43 -17.82 -0.10 1.78 16 13 N -0.88 -24.92 12.65 55.43 0.70 -24.22 16 14 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 C -0.20 -4.60 9.96 -26.69 -0.27 -4.86 16 19 C -0.16 -3.79 9.14 -26.69 -0.24 -4.03 16 20 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 21 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 22 H 0.05 0.47 6.47 -51.93 -0.34 0.14 16 23 H 0.07 0.78 7.93 -51.92 -0.41 0.37 16 24 H 0.03 0.32 8.12 -51.93 -0.42 -0.10 16 25 H 0.07 0.90 6.47 -51.93 -0.34 0.57 16 26 H 0.07 0.69 6.30 -51.93 -0.33 0.36 16 27 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.08 1.18 7.93 -51.92 -0.41 0.77 16 29 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 30 H 0.02 0.34 6.55 -51.93 -0.34 0.00 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.34 7.14 8.31 -39.29 -0.33 6.81 16 33 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.04 0.86 8.08 -51.93 -0.42 0.44 16 35 H 0.26 7.06 8.32 -40.82 -0.34 6.73 16 36 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 37 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 39 H 0.08 2.12 8.14 -51.93 -0.42 1.70 16 LS Contribution 313.96 15.07 4.73 4.73 Total: -1.00 -27.69 313.96 -8.91 -36.60 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -7.10 Total: 4.59 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: -0.32 Total: -15.17 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: -1.19 Total: -46.71 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.69 -8.91 -36.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854209.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.106 kcal (2) G-P(sol) polarization free energy of solvation -27.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds