Wall clock time and date at job start Mon Mar 30 2020 03:33:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46895 * 1
3 3 C 1.46907 * 110.99804 * 2 1
4 4 C 1.50704 * 109.46709 * 66.04547 * 3 2 1
5 5 H 1.07996 * 120.00044 * 0.02562 * 4 3 2
6 6 C 1.37885 * 119.99405 * 180.27452 * 4 3 2
7 7 N 1.31520 * 119.99585 * 179.72666 * 6 4 3
8 8 Si 1.86795 * 120.00313 * 359.72710 * 6 4 3
9 9 H 1.48505 * 109.47064 * 89.99850 * 8 6 4
10 10 H 1.48494 * 109.47417 * 210.00011 * 8 6 4
11 11 H 1.48502 * 109.47139 * 329.99954 * 8 6 4
12 12 C 1.46901 * 111.00036 * 236.04968 * 2 1 3
13 13 H 1.08992 * 109.47048 * 312.53067 * 12 2 1
14 14 C 1.52998 * 109.47052 * 72.53087 * 12 2 1
15 15 C 1.53001 * 109.47181 * 179.97438 * 14 12 2
16 16 C 1.53004 * 109.47139 * 300.00147 * 15 14 12
17 17 C 1.53007 * 109.46837 * 59.99712 * 16 15 14
18 18 C 1.52997 * 109.46829 * 192.53084 * 12 2 1
19 19 H 1.09006 * 109.47408 * 299.99716 * 18 12 2
20 20 C 1.52998 * 109.47302 * 60.00156 * 18 12 2
21 21 N 1.46902 * 109.47320 * 183.10529 * 20 18 12
22 22 H 1.09004 * 109.47826 * 54.24306 * 1 2 3
23 23 H 1.08999 * 109.47172 * 174.24447 * 1 2 3
24 24 H 1.09004 * 109.47241 * 294.24245 * 1 2 3
25 25 H 1.09005 * 109.46903 * 306.05128 * 3 2 1
26 26 H 1.08994 * 109.46900 * 186.04858 * 3 2 1
27 27 H 0.96994 * 119.99703 * 180.02562 * 7 6 4
28 28 H 1.09004 * 109.47477 * 300.00081 * 14 12 2
29 29 H 1.08999 * 109.47599 * 60.00121 * 14 12 2
30 30 H 1.09006 * 109.46727 * 60.00051 * 15 14 12
31 31 H 1.09000 * 109.47564 * 179.97438 * 15 14 12
32 32 H 1.08996 * 109.46851 * 179.97438 * 16 15 14
33 33 H 1.08992 * 109.47117 * 299.99711 * 16 15 14
34 34 H 1.08994 * 109.47217 * 60.00634 * 17 16 15
35 35 H 1.09003 * 109.46608 * 180.02562 * 17 16 15
36 36 H 1.09006 * 109.46782 * 303.09986 * 20 18 12
37 37 H 1.08993 * 109.47424 * 63.10325 * 20 18 12
38 38 H 1.00897 * 111.00064 * 56.04113 * 21 20 18
39 39 H 1.00896 * 111.00134 * 180.02562 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4689 0.0000 0.0000
3 6 1.9954 1.3715 0.0000
4 6 1.6368 2.0471 1.2985
5 1 1.0745 1.5112 2.0488
6 6 2.0222 3.3513 1.5264
7 7 1.7046 3.9427 2.6574
8 14 2.9953 4.2780 0.2289
9 1 2.0584 4.9767 -0.6873
10 1 3.8771 5.2739 0.8889
11 1 3.8239 3.3201 -0.5464
12 6 1.9954 -0.7659 -1.1376
13 1 1.4771 -1.7225 -1.2026
14 6 1.7739 0.0229 -2.4297
15 6 2.3228 -0.7745 -3.6146
16 6 3.8202 -1.0177 -3.4158
17 6 4.0417 -1.8065 -2.1236
18 6 3.4927 -1.0096 -0.9391
19 1 4.0111 -0.0529 -0.8742
20 6 3.7142 -1.7984 0.3530
21 7 5.1553 -1.9681 0.5822
22 1 -0.3635 0.6005 -0.8339
23 1 -0.3633 -1.0225 -0.1031
24 1 -0.3634 0.4220 0.9371
25 1 1.5609 1.9274 -0.8309
26 1 3.0796 1.3445 -0.1083
27 1 1.9753 4.8602 2.8176
28 1 0.7071 0.1966 -2.5712
29 1 2.2922 0.9796 -2.3649
30 1 1.8048 -1.7314 -3.6797
31 1 2.1646 -0.2128 -4.5352
32 1 4.2111 -1.5861 -4.2596
33 1 4.3382 -0.0609 -3.3507
34 1 3.5238 -2.7633 -2.1887
35 1 5.1085 -1.9793 -1.9818
36 1 3.2747 -1.2556 1.1899
37 1 3.2424 -2.7771 0.2666
38 1 5.6259 -1.0758 0.6016
39 1 5.3279 -2.4868 1.4302
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000084214789.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:33:22
Heat of formation + Delta-G solvation = -15.247896 kcal
Electronic energy + Delta-G solvation = -16991.336087 eV
Core-core repulsion = 14546.824344 eV
Total energy + Delta-G solvation = -2444.511743 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-39.32753 -35.45391 -34.20656 -32.43380 -29.95890 -29.30532 -27.87203 -24.66054
-24.01624 -22.33048 -20.66306 -20.37588 -18.69249 -16.90594 -15.75037 -14.83163
-14.73116 -14.41063 -14.19376 -13.93725 -13.58579 -13.40560 -13.07407 -12.54387
-12.36917 -12.02252 -11.73996 -11.50966 -11.28666 -11.08036 -10.96413 -10.74591
-10.50562 -10.35041 -10.03090 -9.89310 -9.85605 -9.71725 -9.18293 -8.57664
-8.30837 -7.26136 -6.06163 -4.02618 3.26060 3.34129 3.35788 4.40616
4.74580 4.83190 5.01206 5.11344 5.25400 5.31031 5.42612 5.55189
5.71630 5.78774 5.80723 5.90559 5.95352 6.04650 6.08840 6.19761
6.30310 6.33542 6.37823 6.42365 6.50538 6.62313 6.65357 6.73307
6.79458 6.92789 7.04456 7.45581 7.62442 7.73081 7.93910 8.10496
8.67201 9.03002 9.56353 11.07148
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.024029 B = 0.009371 C = 0.008927
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1164.960360 B = 2987.336582 C = 3135.663624
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.038 3.962
2 N -0.525 5.525
3 C 0.161 3.839
4 C -0.507 4.507
5 H 0.079 0.921
6 C 0.068 3.932
7 N -0.902 5.902
8 Si 0.872 3.128
9 H -0.278 1.278
10 H -0.286 1.286
11 H -0.267 1.267
12 C 0.089 3.911
13 H 0.069 0.931
14 C -0.153 4.153
15 C -0.113 4.113
16 C -0.121 4.121
17 C -0.103 4.103
18 C -0.073 4.073
19 H 0.069 0.931
20 C 0.070 3.930
21 N -0.855 5.855
22 H 0.014 0.986
23 H 0.044 0.956
24 H 0.074 0.926
25 H -0.015 1.015
26 H 0.028 0.972
27 H 0.263 0.737
28 H 0.058 0.942
29 H 0.066 0.934
30 H 0.057 0.943
31 H 0.053 0.947
32 H 0.055 0.945
33 H 0.058 0.942
34 H 0.054 0.946
35 H 0.071 0.929
36 H 0.054 0.946
37 H 0.059 0.941
38 H 0.338 0.662
39 H 0.334 0.666
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.257 -10.262 -9.795 14.555
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.110 4.110
2 N -0.247 5.247
3 C 0.035 3.965
4 C -0.546 4.546
5 H 0.097 0.903
6 C -0.134 4.134
7 N -0.541 5.541
8 Si 0.700 3.300
9 H -0.204 1.204
10 H -0.212 1.212
11 H -0.192 1.192
12 C -0.021 4.021
13 H 0.087 0.913
14 C -0.192 4.192
15 C -0.151 4.151
16 C -0.159 4.159
17 C -0.141 4.141
18 C -0.093 4.093
19 H 0.088 0.912
20 C -0.060 4.060
21 N -0.383 5.383
22 H 0.033 0.967
23 H 0.063 0.937
24 H 0.093 0.907
25 H 0.003 0.997
26 H 0.046 0.954
27 H 0.073 0.927
28 H 0.077 0.923
29 H 0.085 0.915
30 H 0.076 0.924
31 H 0.072 0.928
32 H 0.074 0.926
33 H 0.077 0.923
34 H 0.073 0.927
35 H 0.089 0.911
36 H 0.072 0.928
37 H 0.078 0.922
38 H 0.149 0.851
39 H 0.146 0.854
Dipole moment (debyes) X Y Z Total
from point charges 3.408 -10.720 -9.925 15.001
hybrid contribution -0.018 1.718 -0.516 1.794
sum 3.390 -9.002 -10.440 14.196
Atomic orbital electron populations
1.22207 0.88520 0.98874 1.01417 1.62184 1.07030 1.16475 1.38992
1.20219 0.95233 0.84393 0.96691 1.21080 1.35380 0.97038 1.01061
0.90288 1.24901 0.95822 0.97387 0.95257 1.69896 1.47037 1.13075
1.24074 0.86902 0.80716 0.80123 0.82270 1.20393 1.21189 1.19183
1.21704 0.95047 0.96687 0.88642 0.91306 1.22244 1.00754 1.00207
0.95984 1.21477 0.96066 0.99844 0.97749 1.21578 0.96144 1.00350
0.97825 1.21462 1.01488 0.97860 0.93277 1.21112 0.95023 0.98895
0.94221 0.91229 1.21720 0.87493 0.99115 0.97674 1.58854 1.11598
1.24614 1.43266 0.96705 0.93675 0.90681 0.99694 0.95378 0.92732
0.92309 0.91505 0.92412 0.92793 0.92626 0.92344 0.92716 0.91065
0.92795 0.92229 0.85086 0.85437
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.73 8.96 60.06 0.54 1.27 16
2 N -0.52 -10.65 3.86 -236.33 -0.91 -11.57 16
3 C 0.16 3.83 2.65 -4.97 -0.01 3.81 16
4 C -0.51 -14.28 9.14 -34.44 -0.31 -14.59 16
5 H 0.08 2.43 7.34 -52.49 -0.39 2.04 16
6 C 0.07 1.95 5.47 -17.81 -0.10 1.85 16
7 N -0.90 -27.60 13.96 55.43 0.77 -26.82 16
8 Si 0.87 21.57 27.46 -169.99 -4.67 16.90 16
9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16
10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16
11 H -0.27 -6.34 6.55 56.52 0.37 -5.97 16
12 C 0.09 1.50 1.62 -67.71 -0.11 1.39 16
13 H 0.07 1.09 7.88 -51.93 -0.41 0.68 16
14 C -0.15 -2.45 4.43 -26.73 -0.12 -2.57 16
15 C -0.11 -1.49 5.92 -26.73 -0.16 -1.65 16
16 C -0.12 -1.56 5.92 -26.73 -0.16 -1.72 16
17 C -0.10 -1.40 5.07 -26.75 -0.14 -1.53 16
18 C -0.07 -1.17 1.73 -90.65 -0.16 -1.32 16
19 H 0.07 1.27 6.46 -51.93 -0.34 0.94 16
20 C 0.07 1.10 6.08 -3.82 -0.02 1.07 16
21 N -0.86 -11.66 8.99 -10.37 -0.09 -11.75 16
22 H 0.01 0.27 7.07 -51.93 -0.37 -0.09 16
23 H 0.04 0.73 7.91 -51.93 -0.41 0.32 16
24 H 0.07 1.57 7.03 -51.93 -0.37 1.21 16
25 H -0.01 -0.35 6.19 -51.93 -0.32 -0.67 16
26 H 0.03 0.69 5.28 -51.93 -0.27 0.41 16
27 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16
28 H 0.06 0.94 7.00 -51.93 -0.36 0.58 16
29 H 0.07 1.21 6.54 -51.93 -0.34 0.87 16
30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16
31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16
32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16
33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16
34 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16
35 H 0.07 0.97 7.69 -51.93 -0.40 0.58 16
36 H 0.05 1.00 7.51 -51.93 -0.39 0.61 16
37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16
38 H 0.34 4.63 8.99 -39.29 -0.35 4.28 16
39 H 0.33 4.00 9.08 -39.29 -0.36 3.64 16
LS Contribution 291.18 15.07 4.39 4.39
Total: -1.00 -29.34 291.18 -8.03 -37.37
By element:
Atomic # 1 Polarization: 12.24 SS G_CDS: -6.77 Total: 5.46 kcal
Atomic # 6 Polarization: -13.24 SS G_CDS: -0.75 Total: -13.99 kcal
Atomic # 7 Polarization: -49.91 SS G_CDS: -0.23 Total: -50.14 kcal
Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal
Total LS contribution 4.39 Total: 4.39 kcal
Total: -29.34 -8.03 -37.37 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000084214789.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 22.125 kcal
(2) G-P(sol) polarization free energy of solvation -29.338 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.213 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.373 kcal
(6) G-S(sol) free energy of system = (1) + (5) -15.248 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds