Wall clock time and date at job start Mon Mar 30 2020 03:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46907 * 110.99804 * 2 1 4 4 C 1.50704 * 109.46709 * 66.04547 * 3 2 1 5 5 H 1.07996 * 120.00044 * 0.02562 * 4 3 2 6 6 C 1.37885 * 119.99405 * 180.27452 * 4 3 2 7 7 N 1.31520 * 119.99585 * 179.72666 * 6 4 3 8 8 Si 1.86795 * 120.00313 * 359.72710 * 6 4 3 9 9 H 1.48505 * 109.47064 * 89.99850 * 8 6 4 10 10 H 1.48494 * 109.47417 * 210.00011 * 8 6 4 11 11 H 1.48502 * 109.47139 * 329.99954 * 8 6 4 12 12 C 1.46901 * 111.00036 * 236.04968 * 2 1 3 13 13 H 1.08992 * 109.47048 * 312.53067 * 12 2 1 14 14 C 1.52998 * 109.47052 * 72.53087 * 12 2 1 15 15 C 1.53001 * 109.47181 * 179.97438 * 14 12 2 16 16 C 1.53004 * 109.47139 * 300.00147 * 15 14 12 17 17 C 1.53007 * 109.46837 * 59.99712 * 16 15 14 18 18 C 1.52997 * 109.46829 * 192.53084 * 12 2 1 19 19 H 1.09006 * 109.47408 * 299.99716 * 18 12 2 20 20 C 1.52998 * 109.47302 * 60.00156 * 18 12 2 21 21 N 1.46902 * 109.47320 * 183.10529 * 20 18 12 22 22 H 1.09004 * 109.47826 * 54.24306 * 1 2 3 23 23 H 1.08999 * 109.47172 * 174.24447 * 1 2 3 24 24 H 1.09004 * 109.47241 * 294.24245 * 1 2 3 25 25 H 1.09005 * 109.46903 * 306.05128 * 3 2 1 26 26 H 1.08994 * 109.46900 * 186.04858 * 3 2 1 27 27 H 0.96994 * 119.99703 * 180.02562 * 7 6 4 28 28 H 1.09004 * 109.47477 * 300.00081 * 14 12 2 29 29 H 1.08999 * 109.47599 * 60.00121 * 14 12 2 30 30 H 1.09006 * 109.46727 * 60.00051 * 15 14 12 31 31 H 1.09000 * 109.47564 * 179.97438 * 15 14 12 32 32 H 1.08996 * 109.46851 * 179.97438 * 16 15 14 33 33 H 1.08992 * 109.47117 * 299.99711 * 16 15 14 34 34 H 1.08994 * 109.47217 * 60.00634 * 17 16 15 35 35 H 1.09003 * 109.46608 * 180.02562 * 17 16 15 36 36 H 1.09006 * 109.46782 * 303.09986 * 20 18 12 37 37 H 1.08993 * 109.47424 * 63.10325 * 20 18 12 38 38 H 1.00897 * 111.00064 * 56.04113 * 21 20 18 39 39 H 1.00896 * 111.00134 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0471 1.2985 5 1 1.0745 1.5112 2.0488 6 6 2.0222 3.3513 1.5264 7 7 1.7046 3.9427 2.6574 8 14 2.9953 4.2780 0.2289 9 1 2.0584 4.9767 -0.6873 10 1 3.8771 5.2739 0.8889 11 1 3.8239 3.3201 -0.5464 12 6 1.9954 -0.7659 -1.1376 13 1 1.4771 -1.7225 -1.2026 14 6 1.7739 0.0229 -2.4297 15 6 2.3228 -0.7745 -3.6146 16 6 3.8202 -1.0177 -3.4158 17 6 4.0417 -1.8065 -2.1236 18 6 3.4927 -1.0096 -0.9391 19 1 4.0111 -0.0529 -0.8742 20 6 3.7142 -1.7984 0.3530 21 7 5.1553 -1.9681 0.5822 22 1 -0.3635 0.6005 -0.8339 23 1 -0.3633 -1.0225 -0.1031 24 1 -0.3634 0.4220 0.9371 25 1 1.5609 1.9274 -0.8309 26 1 3.0796 1.3445 -0.1083 27 1 1.9753 4.8602 2.8176 28 1 0.7071 0.1966 -2.5712 29 1 2.2922 0.9796 -2.3649 30 1 1.8048 -1.7314 -3.6797 31 1 2.1646 -0.2128 -4.5352 32 1 4.2111 -1.5861 -4.2596 33 1 4.3382 -0.0609 -3.3507 34 1 3.5238 -2.7633 -2.1887 35 1 5.1085 -1.9793 -1.9818 36 1 3.2747 -1.2556 1.1899 37 1 3.2424 -2.7771 0.2666 38 1 5.6259 -1.0758 0.6016 39 1 5.3279 -2.4868 1.4302 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084214789.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:22 Heat of formation + Delta-G solvation = -15.247896 kcal Electronic energy + Delta-G solvation = -16991.336087 eV Core-core repulsion = 14546.824344 eV Total energy + Delta-G solvation = -2444.511743 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.32753 -35.45391 -34.20656 -32.43380 -29.95890 -29.30532 -27.87203 -24.66054 -24.01624 -22.33048 -20.66306 -20.37588 -18.69249 -16.90594 -15.75037 -14.83163 -14.73116 -14.41063 -14.19376 -13.93725 -13.58579 -13.40560 -13.07407 -12.54387 -12.36917 -12.02252 -11.73996 -11.50966 -11.28666 -11.08036 -10.96413 -10.74591 -10.50562 -10.35041 -10.03090 -9.89310 -9.85605 -9.71725 -9.18293 -8.57664 -8.30837 -7.26136 -6.06163 -4.02618 3.26060 3.34129 3.35788 4.40616 4.74580 4.83190 5.01206 5.11344 5.25400 5.31031 5.42612 5.55189 5.71630 5.78774 5.80723 5.90559 5.95352 6.04650 6.08840 6.19761 6.30310 6.33542 6.37823 6.42365 6.50538 6.62313 6.65357 6.73307 6.79458 6.92789 7.04456 7.45581 7.62442 7.73081 7.93910 8.10496 8.67201 9.03002 9.56353 11.07148 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.024029 B = 0.009371 C = 0.008927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.960360 B = 2987.336582 C = 3135.663624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.525 5.525 3 C 0.161 3.839 4 C -0.507 4.507 5 H 0.079 0.921 6 C 0.068 3.932 7 N -0.902 5.902 8 Si 0.872 3.128 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.267 1.267 12 C 0.089 3.911 13 H 0.069 0.931 14 C -0.153 4.153 15 C -0.113 4.113 16 C -0.121 4.121 17 C -0.103 4.103 18 C -0.073 4.073 19 H 0.069 0.931 20 C 0.070 3.930 21 N -0.855 5.855 22 H 0.014 0.986 23 H 0.044 0.956 24 H 0.074 0.926 25 H -0.015 1.015 26 H 0.028 0.972 27 H 0.263 0.737 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.338 0.662 39 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.257 -10.262 -9.795 14.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.247 5.247 3 C 0.035 3.965 4 C -0.546 4.546 5 H 0.097 0.903 6 C -0.134 4.134 7 N -0.541 5.541 8 Si 0.700 3.300 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.192 1.192 12 C -0.021 4.021 13 H 0.087 0.913 14 C -0.192 4.192 15 C -0.151 4.151 16 C -0.159 4.159 17 C -0.141 4.141 18 C -0.093 4.093 19 H 0.088 0.912 20 C -0.060 4.060 21 N -0.383 5.383 22 H 0.033 0.967 23 H 0.063 0.937 24 H 0.093 0.907 25 H 0.003 0.997 26 H 0.046 0.954 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.149 0.851 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.408 -10.720 -9.925 15.001 hybrid contribution -0.018 1.718 -0.516 1.794 sum 3.390 -9.002 -10.440 14.196 Atomic orbital electron populations 1.22207 0.88520 0.98874 1.01417 1.62184 1.07030 1.16475 1.38992 1.20219 0.95233 0.84393 0.96691 1.21080 1.35380 0.97038 1.01061 0.90288 1.24901 0.95822 0.97387 0.95257 1.69896 1.47037 1.13075 1.24074 0.86902 0.80716 0.80123 0.82270 1.20393 1.21189 1.19183 1.21704 0.95047 0.96687 0.88642 0.91306 1.22244 1.00754 1.00207 0.95984 1.21477 0.96066 0.99844 0.97749 1.21578 0.96144 1.00350 0.97825 1.21462 1.01488 0.97860 0.93277 1.21112 0.95023 0.98895 0.94221 0.91229 1.21720 0.87493 0.99115 0.97674 1.58854 1.11598 1.24614 1.43266 0.96705 0.93675 0.90681 0.99694 0.95378 0.92732 0.92309 0.91505 0.92412 0.92793 0.92626 0.92344 0.92716 0.91065 0.92795 0.92229 0.85086 0.85437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 8.96 60.06 0.54 1.27 16 2 N -0.52 -10.65 3.86 -236.33 -0.91 -11.57 16 3 C 0.16 3.83 2.65 -4.97 -0.01 3.81 16 4 C -0.51 -14.28 9.14 -34.44 -0.31 -14.59 16 5 H 0.08 2.43 7.34 -52.49 -0.39 2.04 16 6 C 0.07 1.95 5.47 -17.81 -0.10 1.85 16 7 N -0.90 -27.60 13.96 55.43 0.77 -26.82 16 8 Si 0.87 21.57 27.46 -169.99 -4.67 16.90 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.27 -6.34 6.55 56.52 0.37 -5.97 16 12 C 0.09 1.50 1.62 -67.71 -0.11 1.39 16 13 H 0.07 1.09 7.88 -51.93 -0.41 0.68 16 14 C -0.15 -2.45 4.43 -26.73 -0.12 -2.57 16 15 C -0.11 -1.49 5.92 -26.73 -0.16 -1.65 16 16 C -0.12 -1.56 5.92 -26.73 -0.16 -1.72 16 17 C -0.10 -1.40 5.07 -26.75 -0.14 -1.53 16 18 C -0.07 -1.17 1.73 -90.65 -0.16 -1.32 16 19 H 0.07 1.27 6.46 -51.93 -0.34 0.94 16 20 C 0.07 1.10 6.08 -3.82 -0.02 1.07 16 21 N -0.86 -11.66 8.99 -10.37 -0.09 -11.75 16 22 H 0.01 0.27 7.07 -51.93 -0.37 -0.09 16 23 H 0.04 0.73 7.91 -51.93 -0.41 0.32 16 24 H 0.07 1.57 7.03 -51.93 -0.37 1.21 16 25 H -0.01 -0.35 6.19 -51.93 -0.32 -0.67 16 26 H 0.03 0.69 5.28 -51.93 -0.27 0.41 16 27 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 28 H 0.06 0.94 7.00 -51.93 -0.36 0.58 16 29 H 0.07 1.21 6.54 -51.93 -0.34 0.87 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.97 7.69 -51.93 -0.40 0.58 16 36 H 0.05 1.00 7.51 -51.93 -0.39 0.61 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.34 4.63 8.99 -39.29 -0.35 4.28 16 39 H 0.33 4.00 9.08 -39.29 -0.36 3.64 16 LS Contribution 291.18 15.07 4.39 4.39 Total: -1.00 -29.34 291.18 -8.03 -37.37 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -6.77 Total: 5.46 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -0.75 Total: -13.99 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: -0.23 Total: -50.14 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.34 -8.03 -37.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084214789.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.125 kcal (2) G-P(sol) polarization free energy of solvation -29.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds