Wall clock time and date at job start Mon Mar 30 2020 03:33:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46895 * 1
3 3 C 1.46907 * 110.99804 * 2 1
4 4 C 1.50704 * 109.46709 * 66.04547 * 3 2 1
5 5 H 1.07996 * 120.00044 * 0.02562 * 4 3 2
6 6 C 1.37885 * 119.99405 * 180.27452 * 4 3 2
7 7 N 1.31520 * 119.99585 * 179.72666 * 6 4 3
8 8 Si 1.86795 * 120.00313 * 359.72710 * 6 4 3
9 9 H 1.48505 * 109.47064 * 89.99850 * 8 6 4
10 10 H 1.48494 * 109.47417 * 210.00011 * 8 6 4
11 11 H 1.48502 * 109.47139 * 329.99954 * 8 6 4
12 12 C 1.46901 * 111.00036 * 236.04968 * 2 1 3
13 13 H 1.08992 * 109.47048 * 312.53067 * 12 2 1
14 14 C 1.52998 * 109.47052 * 72.53087 * 12 2 1
15 15 C 1.53001 * 109.47181 * 179.97438 * 14 12 2
16 16 C 1.53004 * 109.47139 * 300.00147 * 15 14 12
17 17 C 1.53007 * 109.46837 * 59.99712 * 16 15 14
18 18 C 1.52997 * 109.46829 * 192.53084 * 12 2 1
19 19 H 1.09006 * 109.47408 * 299.99716 * 18 12 2
20 20 C 1.52998 * 109.47302 * 60.00156 * 18 12 2
21 21 N 1.46902 * 109.47320 * 183.10529 * 20 18 12
22 22 H 1.09004 * 109.47826 * 54.24306 * 1 2 3
23 23 H 1.08999 * 109.47172 * 174.24447 * 1 2 3
24 24 H 1.09004 * 109.47241 * 294.24245 * 1 2 3
25 25 H 1.09005 * 109.46903 * 306.05128 * 3 2 1
26 26 H 1.08994 * 109.46900 * 186.04858 * 3 2 1
27 27 H 0.96994 * 119.99703 * 180.02562 * 7 6 4
28 28 H 1.09004 * 109.47477 * 300.00081 * 14 12 2
29 29 H 1.08999 * 109.47599 * 60.00121 * 14 12 2
30 30 H 1.09006 * 109.46727 * 60.00051 * 15 14 12
31 31 H 1.09000 * 109.47564 * 179.97438 * 15 14 12
32 32 H 1.08996 * 109.46851 * 179.97438 * 16 15 14
33 33 H 1.08992 * 109.47117 * 299.99711 * 16 15 14
34 34 H 1.08994 * 109.47217 * 60.00634 * 17 16 15
35 35 H 1.09003 * 109.46608 * 180.02562 * 17 16 15
36 36 H 1.09006 * 109.46782 * 303.09986 * 20 18 12
37 37 H 1.08993 * 109.47424 * 63.10325 * 20 18 12
38 38 H 1.00897 * 111.00064 * 56.04113 * 21 20 18
39 39 H 1.00896 * 111.00134 * 180.02562 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4689 0.0000 0.0000
3 6 1.9954 1.3715 0.0000
4 6 1.6368 2.0471 1.2985
5 1 1.0745 1.5112 2.0488
6 6 2.0222 3.3513 1.5264
7 7 1.7046 3.9427 2.6574
8 14 2.9953 4.2780 0.2289
9 1 2.0584 4.9767 -0.6873
10 1 3.8771 5.2739 0.8889
11 1 3.8239 3.3201 -0.5464
12 6 1.9954 -0.7659 -1.1376
13 1 1.4771 -1.7225 -1.2026
14 6 1.7739 0.0229 -2.4297
15 6 2.3228 -0.7745 -3.6146
16 6 3.8202 -1.0177 -3.4158
17 6 4.0417 -1.8065 -2.1236
18 6 3.4927 -1.0096 -0.9391
19 1 4.0111 -0.0529 -0.8742
20 6 3.7142 -1.7984 0.3530
21 7 5.1553 -1.9681 0.5822
22 1 -0.3635 0.6005 -0.8339
23 1 -0.3633 -1.0225 -0.1031
24 1 -0.3634 0.4220 0.9371
25 1 1.5609 1.9274 -0.8309
26 1 3.0796 1.3445 -0.1083
27 1 1.9753 4.8602 2.8176
28 1 0.7071 0.1966 -2.5712
29 1 2.2922 0.9796 -2.3649
30 1 1.8048 -1.7314 -3.6797
31 1 2.1646 -0.2128 -4.5352
32 1 4.2111 -1.5861 -4.2596
33 1 4.3382 -0.0609 -3.3507
34 1 3.5238 -2.7633 -2.1887
35 1 5.1085 -1.9793 -1.9818
36 1 3.2747 -1.2556 1.1899
37 1 3.2424 -2.7771 0.2666
38 1 5.6259 -1.0758 0.6016
39 1 5.3279 -2.4868 1.4302
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000084214789.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:33:21
Heat of formation + Delta-G solvation = -36.228927 kcal
Electronic energy + Delta-G solvation = -16992.245893 eV
Core-core repulsion = 14546.824344 eV
Total energy + Delta-G solvation = -2445.421549 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-40.66846 -36.95746 -35.37246 -34.57301 -31.10961 -30.79603 -29.68494 -26.27018
-25.24943 -24.04070 -21.90727 -21.64251 -20.15715 -19.01123 -17.05837 -16.54315
-16.16492 -15.89455 -15.46353 -15.27038 -15.02053 -14.95442 -14.48186 -14.34498
-13.90748 -13.27865 -13.24050 -12.97969 -12.71865 -12.65989 -12.48123 -12.27314
-11.89767 -11.79169 -11.65352 -11.54810 -11.20496 -11.16799 -10.86831 -10.78495
-9.50722 -8.86773 -8.30635 -6.32393 1.29279 1.30884 1.41532 2.30518
3.02593 3.27870 3.62307 3.85469 3.96289 4.14602 4.23828 4.35633
4.48434 4.55801 4.59821 4.60857 4.67204 4.72328 4.84324 4.89183
4.94920 5.00110 5.11031 5.16295 5.19820 5.27108 5.32556 5.36752
5.39471 5.52540 5.58145 5.64508 6.01086 6.27608 6.42548 6.64315
6.70424 6.75087 7.31113 8.86163
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.024029 B = 0.009371 C = 0.008927
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1164.960360 B = 2987.336582 C = 3135.663624
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.042 3.958
2 N -0.538 5.538
3 C 0.179 3.821
4 C -0.513 4.513
5 H 0.037 0.963
6 C 0.009 3.991
7 N -0.948 5.948
8 Si 0.940 3.060
9 H -0.269 1.269
10 H -0.280 1.280
11 H -0.252 1.252
12 C 0.089 3.911
13 H 0.088 0.912
14 C -0.151 4.151
15 C -0.107 4.107
16 C -0.120 4.120
17 C -0.094 4.094
18 C -0.071 4.071
19 H 0.042 0.958
20 C 0.078 3.922
21 N -0.847 5.847
22 H 0.017 0.983
23 H 0.078 0.922
24 H 0.043 0.957
25 H -0.017 1.017
26 H 0.025 0.975
27 H 0.266 0.734
28 H 0.057 0.943
29 H 0.041 0.959
30 H 0.074 0.926
31 H 0.066 0.934
32 H 0.080 0.920
33 H 0.046 0.954
34 H 0.067 0.933
35 H 0.071 0.929
36 H 0.017 0.983
37 H 0.071 0.929
38 H 0.337 0.663
39 H 0.345 0.655
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.167 -11.614 -12.422 17.508
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.106 4.106
2 N -0.260 5.260
3 C 0.052 3.948
4 C -0.551 4.551
5 H 0.055 0.945
6 C -0.188 4.188
7 N -0.589 5.589
8 Si 0.764 3.236
9 H -0.195 1.195
10 H -0.206 1.206
11 H -0.175 1.175
12 C -0.020 4.020
13 H 0.106 0.894
14 C -0.190 4.190
15 C -0.145 4.145
16 C -0.157 4.157
17 C -0.132 4.132
18 C -0.090 4.090
19 H 0.061 0.939
20 C -0.053 4.053
21 N -0.376 5.376
22 H 0.035 0.965
23 H 0.097 0.903
24 H 0.062 0.938
25 H 0.000 1.000
26 H 0.043 0.957
27 H 0.075 0.925
28 H 0.075 0.925
29 H 0.060 0.940
30 H 0.093 0.907
31 H 0.084 0.916
32 H 0.098 0.902
33 H 0.065 0.935
34 H 0.086 0.914
35 H 0.090 0.910
36 H 0.035 0.965
37 H 0.089 0.911
38 H 0.149 0.851
39 H 0.157 0.843
Dipole moment (debyes) X Y Z Total
from point charges 4.319 -12.101 -12.560 17.968
hybrid contribution -0.354 2.058 0.388 2.123
sum 3.965 -10.044 -12.172 16.271
Atomic orbital electron populations
1.22157 0.87896 1.00736 0.99830 1.62065 1.07732 1.14607 1.41625
1.19863 0.94926 0.86091 0.93893 1.21331 1.34492 0.97263 1.02011
0.94470 1.25791 0.97035 0.98462 0.97520 1.70048 1.48762 1.13687
1.26404 0.85811 0.79423 0.78862 0.79480 1.19450 1.20558 1.17545
1.21826 0.95647 0.96805 0.87723 0.89437 1.22197 1.00542 0.99378
0.96862 1.21451 0.96161 1.00251 0.96637 1.21580 0.95934 1.00027
0.98199 1.21385 1.01453 0.97949 0.92373 1.21085 0.94210 0.98079
0.95620 0.93917 1.21580 0.88430 0.99003 0.96298 1.58851 1.10216
1.24596 1.43944 0.96472 0.90331 0.93774 0.99953 0.95694 0.92518
0.92475 0.93983 0.90705 0.91553 0.90175 0.93530 0.91414 0.90987
0.96457 0.91078 0.85141 0.84283
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 1.60 8.96 127.69 1.14 2.74 16
2 N -0.54 -21.83 3.86 -901.61 -3.48 -25.31 16
3 C 0.18 8.61 2.65 85.56 0.23 8.84 16
4 C -0.51 -29.89 9.14 25.60 0.23 -29.65 16
5 H 0.04 2.42 7.34 -2.91 -0.02 2.40 16
6 C 0.01 0.53 5.47 84.66 0.46 1.00 16
7 N -0.95 -59.83 13.96 21.45 0.30 -59.53 16
8 Si 0.94 44.82 27.46 68.60 1.88 46.70 16
9 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16
10 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16
11 H -0.25 -11.27 6.55 99.48 0.65 -10.61 16
12 C 0.09 2.84 1.62 44.91 0.07 2.91 16
13 H 0.09 2.50 7.88 -2.39 -0.02 2.48 16
14 C -0.15 -4.52 4.43 30.59 0.14 -4.38 16
15 C -0.11 -2.42 5.92 30.60 0.18 -2.24 16
16 C -0.12 -2.66 5.92 30.60 0.18 -2.48 16
17 C -0.09 -2.25 5.07 30.58 0.16 -2.09 16
18 C -0.07 -2.14 1.73 -10.81 -0.02 -2.16 16
19 H 0.04 1.53 6.46 -2.38 -0.02 1.51 16
20 C 0.08 2.34 6.08 86.30 0.53 2.87 16
21 N -0.85 -21.93 8.99 -186.72 -1.68 -23.61 16
22 H 0.02 0.63 7.07 -2.38 -0.02 0.61 16
23 H 0.08 2.42 7.91 -2.39 -0.02 2.40 16
24 H 0.04 1.92 7.03 -2.39 -0.02 1.90 16
25 H -0.02 -0.83 6.19 -2.38 -0.01 -0.84 16
26 H 0.03 1.22 5.28 -2.39 -0.01 1.21 16
27 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16
28 H 0.06 1.71 7.00 -2.38 -0.02 1.70 16
29 H 0.04 1.46 6.54 -2.39 -0.02 1.45 16
30 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16
31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16
32 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16
33 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16
34 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16
35 H 0.07 1.75 7.69 -2.39 -0.02 1.73 16
36 H 0.02 0.64 7.51 -2.38 -0.02 0.62 16
37 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16
38 H 0.34 8.94 8.99 -89.70 -0.81 8.13 16
39 H 0.34 7.77 9.08 -89.70 -0.81 6.95 16
Total: -1.00 -64.79 291.18 -0.32 -65.11
By element:
Atomic # 1 Polarization: 21.93 SS G_CDS: -0.65 Total: 21.28 kcal
Atomic # 6 Polarization: -27.95 SS G_CDS: 3.30 Total: -24.65 kcal
Atomic # 7 Polarization: -103.58 SS G_CDS: -4.86 Total: -108.44 kcal
Atomic # 14 Polarization: 44.82 SS G_CDS: 1.88 Total: 46.70 kcal
Total: -64.79 -0.32 -65.11 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000084214789.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.886 kcal
(2) G-P(sol) polarization free energy of solvation -64.790 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.904 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.325 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.115 kcal
(6) G-S(sol) free energy of system = (1) + (5) -36.229 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds