Wall clock time and date at job start Mon Mar 30 2020 03:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46907 * 110.99804 * 2 1 4 4 C 1.50704 * 109.46709 * 66.04547 * 3 2 1 5 5 H 1.07996 * 120.00044 * 0.02562 * 4 3 2 6 6 C 1.37885 * 119.99405 * 180.27452 * 4 3 2 7 7 N 1.31520 * 119.99585 * 179.72666 * 6 4 3 8 8 Si 1.86795 * 120.00313 * 359.72710 * 6 4 3 9 9 H 1.48505 * 109.47064 * 89.99850 * 8 6 4 10 10 H 1.48494 * 109.47417 * 210.00011 * 8 6 4 11 11 H 1.48502 * 109.47139 * 329.99954 * 8 6 4 12 12 C 1.46901 * 111.00036 * 236.04968 * 2 1 3 13 13 H 1.08992 * 109.47048 * 312.53067 * 12 2 1 14 14 C 1.52998 * 109.47052 * 72.53087 * 12 2 1 15 15 C 1.53001 * 109.47181 * 179.97438 * 14 12 2 16 16 C 1.53004 * 109.47139 * 300.00147 * 15 14 12 17 17 C 1.53007 * 109.46837 * 59.99712 * 16 15 14 18 18 C 1.52997 * 109.46829 * 192.53084 * 12 2 1 19 19 H 1.09006 * 109.47408 * 299.99716 * 18 12 2 20 20 C 1.52998 * 109.47302 * 60.00156 * 18 12 2 21 21 N 1.46902 * 109.47320 * 183.10529 * 20 18 12 22 22 H 1.09004 * 109.47826 * 54.24306 * 1 2 3 23 23 H 1.08999 * 109.47172 * 174.24447 * 1 2 3 24 24 H 1.09004 * 109.47241 * 294.24245 * 1 2 3 25 25 H 1.09005 * 109.46903 * 306.05128 * 3 2 1 26 26 H 1.08994 * 109.46900 * 186.04858 * 3 2 1 27 27 H 0.96994 * 119.99703 * 180.02562 * 7 6 4 28 28 H 1.09004 * 109.47477 * 300.00081 * 14 12 2 29 29 H 1.08999 * 109.47599 * 60.00121 * 14 12 2 30 30 H 1.09006 * 109.46727 * 60.00051 * 15 14 12 31 31 H 1.09000 * 109.47564 * 179.97438 * 15 14 12 32 32 H 1.08996 * 109.46851 * 179.97438 * 16 15 14 33 33 H 1.08992 * 109.47117 * 299.99711 * 16 15 14 34 34 H 1.08994 * 109.47217 * 60.00634 * 17 16 15 35 35 H 1.09003 * 109.46608 * 180.02562 * 17 16 15 36 36 H 1.09006 * 109.46782 * 303.09986 * 20 18 12 37 37 H 1.08993 * 109.47424 * 63.10325 * 20 18 12 38 38 H 1.00897 * 111.00064 * 56.04113 * 21 20 18 39 39 H 1.00896 * 111.00134 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0471 1.2985 5 1 1.0745 1.5112 2.0488 6 6 2.0222 3.3513 1.5264 7 7 1.7046 3.9427 2.6574 8 14 2.9953 4.2780 0.2289 9 1 2.0584 4.9767 -0.6873 10 1 3.8771 5.2739 0.8889 11 1 3.8239 3.3201 -0.5464 12 6 1.9954 -0.7659 -1.1376 13 1 1.4771 -1.7225 -1.2026 14 6 1.7739 0.0229 -2.4297 15 6 2.3228 -0.7745 -3.6146 16 6 3.8202 -1.0177 -3.4158 17 6 4.0417 -1.8065 -2.1236 18 6 3.4927 -1.0096 -0.9391 19 1 4.0111 -0.0529 -0.8742 20 6 3.7142 -1.7984 0.3530 21 7 5.1553 -1.9681 0.5822 22 1 -0.3635 0.6005 -0.8339 23 1 -0.3633 -1.0225 -0.1031 24 1 -0.3634 0.4220 0.9371 25 1 1.5609 1.9274 -0.8309 26 1 3.0796 1.3445 -0.1083 27 1 1.9753 4.8602 2.8176 28 1 0.7071 0.1966 -2.5712 29 1 2.2922 0.9796 -2.3649 30 1 1.8048 -1.7314 -3.6797 31 1 2.1646 -0.2128 -4.5352 32 1 4.2111 -1.5861 -4.2596 33 1 4.3382 -0.0609 -3.3507 34 1 3.5238 -2.7633 -2.1887 35 1 5.1085 -1.9793 -1.9818 36 1 3.2747 -1.2556 1.1899 37 1 3.2424 -2.7771 0.2666 38 1 5.6259 -1.0758 0.6016 39 1 5.3279 -2.4868 1.4302 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084214789.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:21 Heat of formation + Delta-G solvation = -36.228927 kcal Electronic energy + Delta-G solvation = -16992.245893 eV Core-core repulsion = 14546.824344 eV Total energy + Delta-G solvation = -2445.421549 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.66846 -36.95746 -35.37246 -34.57301 -31.10961 -30.79603 -29.68494 -26.27018 -25.24943 -24.04070 -21.90727 -21.64251 -20.15715 -19.01123 -17.05837 -16.54315 -16.16492 -15.89455 -15.46353 -15.27038 -15.02053 -14.95442 -14.48186 -14.34498 -13.90748 -13.27865 -13.24050 -12.97969 -12.71865 -12.65989 -12.48123 -12.27314 -11.89767 -11.79169 -11.65352 -11.54810 -11.20496 -11.16799 -10.86831 -10.78495 -9.50722 -8.86773 -8.30635 -6.32393 1.29279 1.30884 1.41532 2.30518 3.02593 3.27870 3.62307 3.85469 3.96289 4.14602 4.23828 4.35633 4.48434 4.55801 4.59821 4.60857 4.67204 4.72328 4.84324 4.89183 4.94920 5.00110 5.11031 5.16295 5.19820 5.27108 5.32556 5.36752 5.39471 5.52540 5.58145 5.64508 6.01086 6.27608 6.42548 6.64315 6.70424 6.75087 7.31113 8.86163 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.024029 B = 0.009371 C = 0.008927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.960360 B = 2987.336582 C = 3135.663624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.538 5.538 3 C 0.179 3.821 4 C -0.513 4.513 5 H 0.037 0.963 6 C 0.009 3.991 7 N -0.948 5.948 8 Si 0.940 3.060 9 H -0.269 1.269 10 H -0.280 1.280 11 H -0.252 1.252 12 C 0.089 3.911 13 H 0.088 0.912 14 C -0.151 4.151 15 C -0.107 4.107 16 C -0.120 4.120 17 C -0.094 4.094 18 C -0.071 4.071 19 H 0.042 0.958 20 C 0.078 3.922 21 N -0.847 5.847 22 H 0.017 0.983 23 H 0.078 0.922 24 H 0.043 0.957 25 H -0.017 1.017 26 H 0.025 0.975 27 H 0.266 0.734 28 H 0.057 0.943 29 H 0.041 0.959 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.046 0.954 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.017 0.983 37 H 0.071 0.929 38 H 0.337 0.663 39 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.167 -11.614 -12.422 17.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.260 5.260 3 C 0.052 3.948 4 C -0.551 4.551 5 H 0.055 0.945 6 C -0.188 4.188 7 N -0.589 5.589 8 Si 0.764 3.236 9 H -0.195 1.195 10 H -0.206 1.206 11 H -0.175 1.175 12 C -0.020 4.020 13 H 0.106 0.894 14 C -0.190 4.190 15 C -0.145 4.145 16 C -0.157 4.157 17 C -0.132 4.132 18 C -0.090 4.090 19 H 0.061 0.939 20 C -0.053 4.053 21 N -0.376 5.376 22 H 0.035 0.965 23 H 0.097 0.903 24 H 0.062 0.938 25 H 0.000 1.000 26 H 0.043 0.957 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.035 0.965 37 H 0.089 0.911 38 H 0.149 0.851 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.319 -12.101 -12.560 17.968 hybrid contribution -0.354 2.058 0.388 2.123 sum 3.965 -10.044 -12.172 16.271 Atomic orbital electron populations 1.22157 0.87896 1.00736 0.99830 1.62065 1.07732 1.14607 1.41625 1.19863 0.94926 0.86091 0.93893 1.21331 1.34492 0.97263 1.02011 0.94470 1.25791 0.97035 0.98462 0.97520 1.70048 1.48762 1.13687 1.26404 0.85811 0.79423 0.78862 0.79480 1.19450 1.20558 1.17545 1.21826 0.95647 0.96805 0.87723 0.89437 1.22197 1.00542 0.99378 0.96862 1.21451 0.96161 1.00251 0.96637 1.21580 0.95934 1.00027 0.98199 1.21385 1.01453 0.97949 0.92373 1.21085 0.94210 0.98079 0.95620 0.93917 1.21580 0.88430 0.99003 0.96298 1.58851 1.10216 1.24596 1.43944 0.96472 0.90331 0.93774 0.99953 0.95694 0.92518 0.92475 0.93983 0.90705 0.91553 0.90175 0.93530 0.91414 0.90987 0.96457 0.91078 0.85141 0.84283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.60 8.96 127.69 1.14 2.74 16 2 N -0.54 -21.83 3.86 -901.61 -3.48 -25.31 16 3 C 0.18 8.61 2.65 85.56 0.23 8.84 16 4 C -0.51 -29.89 9.14 25.60 0.23 -29.65 16 5 H 0.04 2.42 7.34 -2.91 -0.02 2.40 16 6 C 0.01 0.53 5.47 84.66 0.46 1.00 16 7 N -0.95 -59.83 13.96 21.45 0.30 -59.53 16 8 Si 0.94 44.82 27.46 68.60 1.88 46.70 16 9 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 10 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 11 H -0.25 -11.27 6.55 99.48 0.65 -10.61 16 12 C 0.09 2.84 1.62 44.91 0.07 2.91 16 13 H 0.09 2.50 7.88 -2.39 -0.02 2.48 16 14 C -0.15 -4.52 4.43 30.59 0.14 -4.38 16 15 C -0.11 -2.42 5.92 30.60 0.18 -2.24 16 16 C -0.12 -2.66 5.92 30.60 0.18 -2.48 16 17 C -0.09 -2.25 5.07 30.58 0.16 -2.09 16 18 C -0.07 -2.14 1.73 -10.81 -0.02 -2.16 16 19 H 0.04 1.53 6.46 -2.38 -0.02 1.51 16 20 C 0.08 2.34 6.08 86.30 0.53 2.87 16 21 N -0.85 -21.93 8.99 -186.72 -1.68 -23.61 16 22 H 0.02 0.63 7.07 -2.38 -0.02 0.61 16 23 H 0.08 2.42 7.91 -2.39 -0.02 2.40 16 24 H 0.04 1.92 7.03 -2.39 -0.02 1.90 16 25 H -0.02 -0.83 6.19 -2.38 -0.01 -0.84 16 26 H 0.03 1.22 5.28 -2.39 -0.01 1.21 16 27 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 28 H 0.06 1.71 7.00 -2.38 -0.02 1.70 16 29 H 0.04 1.46 6.54 -2.39 -0.02 1.45 16 30 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.07 1.75 7.69 -2.39 -0.02 1.73 16 36 H 0.02 0.64 7.51 -2.38 -0.02 0.62 16 37 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.34 8.94 8.99 -89.70 -0.81 8.13 16 39 H 0.34 7.77 9.08 -89.70 -0.81 6.95 16 Total: -1.00 -64.79 291.18 -0.32 -65.11 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: -0.65 Total: 21.28 kcal Atomic # 6 Polarization: -27.95 SS G_CDS: 3.30 Total: -24.65 kcal Atomic # 7 Polarization: -103.58 SS G_CDS: -4.86 Total: -108.44 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.88 Total: 46.70 kcal Total: -64.79 -0.32 -65.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084214789.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.886 kcal (2) G-P(sol) polarization free energy of solvation -64.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds