Wall clock time and date at job start Mon Mar 30 2020 03:22:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46906 * 1
3 3 C 1.46898 * 110.99961 * 2 1
4 4 C 1.53006 * 109.47006 * 84.99970 * 3 2 1
5 5 C 1.52997 * 109.47127 * 179.97438 * 4 3 2
6 6 C 1.53000 * 109.47060 * 300.00449 * 5 4 3
7 7 N 1.46901 * 109.46769 * 180.02562 * 6 5 4
8 8 C 1.46900 * 111.00162 * 298.94852 * 7 6 5
9 9 C 1.46901 * 110.99952 * 174.99823 * 7 6 5
10 10 C 1.50694 * 109.47447 * 189.99860 * 9 7 6
11 11 H 1.08003 * 120.00064 * 359.97438 * 10 9 7
12 12 C 1.37877 * 120.00264 * 180.02562 * 10 9 7
13 13 N 1.31522 * 119.99918 * 180.02562 * 12 10 9
14 14 Si 1.86798 * 120.00092 * 359.97438 * 12 10 9
15 15 H 1.48500 * 109.46836 * 90.00062 * 14 12 10
16 16 H 1.48502 * 109.47076 * 210.00287 * 14 12 10
17 17 H 1.48500 * 109.46834 * 330.00003 * 14 12 10
18 18 C 1.52996 * 109.47328 * 60.00126 * 6 5 4
19 19 C 1.52997 * 109.47123 * 204.99951 * 3 2 1
20 20 H 1.09001 * 109.46911 * 180.02562 * 1 2 3
21 21 H 1.08996 * 109.46971 * 299.99790 * 1 2 3
22 22 H 1.08994 * 109.47376 * 59.99710 * 1 2 3
23 23 H 1.00893 * 110.99825 * 123.95672 * 2 1 3
24 24 H 1.09001 * 109.47062 * 325.00224 * 3 2 1
25 25 H 1.08998 * 109.46505 * 59.99663 * 4 3 2
26 26 H 1.08996 * 109.46884 * 300.00544 * 4 3 2
27 27 H 1.09002 * 109.47153 * 180.02562 * 5 4 3
28 28 H 1.09001 * 109.46832 * 60.00321 * 5 4 3
29 29 H 1.09001 * 109.47194 * 299.99650 * 6 5 4
30 30 H 1.09003 * 109.46730 * 60.00275 * 8 7 6
31 31 H 1.08993 * 109.47223 * 180.02562 * 8 7 6
32 32 H 1.08999 * 109.47337 * 300.00741 * 8 7 6
33 33 H 1.09000 * 109.47406 * 309.99923 * 9 7 6
34 34 H 1.09001 * 109.47083 * 69.99877 * 9 7 6
35 35 H 0.96997 * 119.99488 * 179.97438 * 13 12 10
36 36 H 1.08992 * 109.47554 * 59.99639 * 18 6 5
37 37 H 1.09004 * 109.47108 * 179.97438 * 18 6 5
38 38 H 1.09002 * 109.47045 * 60.00157 * 19 3 2
39 39 H 1.09001 * 109.47375 * 300.00082 * 19 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4691 0.0000 0.0000
3 6 1.9955 1.3714 0.0000
4 6 2.0609 1.8926 1.4371
5 6 2.6097 3.3207 1.4372
6 6 4.0131 3.3278 0.8277
7 7 4.5403 4.6989 0.8283
8 6 3.6944 5.5886 0.0216
9 6 5.9321 4.7280 0.3595
10 6 6.5159 6.0958 0.6030
11 1 5.9130 6.8666 1.0600
12 6 7.8192 6.3635 0.2415
13 7 8.3287 7.5572 0.4546
14 14 8.8617 5.0306 -0.5496
15 1 8.7024 5.0881 -2.0249
16 1 10.2884 5.2435 -0.1969
17 1 8.4229 3.7007 -0.0557
18 6 3.9476 2.8067 -0.6093
19 6 3.3987 1.3790 -0.6096
20 1 -0.3633 -1.0277 0.0005
21 1 -0.3633 0.5138 0.8900
22 1 -0.3634 0.5138 -0.8899
23 1 1.8306 -0.5261 0.7813
24 1 1.3398 2.0123 -0.5894
25 1 2.7165 1.2516 2.0264
26 1 1.0612 1.8870 1.8714
27 1 2.6567 3.6918 2.4610
28 1 1.9543 3.9618 0.8476
29 1 4.6685 2.6866 1.4172
30 1 2.6851 5.6020 0.4331
31 1 4.1076 6.5970 0.0388
32 1 3.6629 5.2267 -1.0061
33 1 6.5140 3.9828 0.9020
34 1 5.9609 4.5054 -0.7072
35 1 9.2457 7.7454 0.2005
36 1 3.2923 3.4477 -1.1988
37 1 4.9474 2.8121 -1.0437
38 1 3.3521 1.0078 -1.6334
39 1 4.0545 0.7382 -0.0202
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000085873539.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:22:53
Heat of formation + Delta-G solvation = -5.763164 kcal
Electronic energy + Delta-G solvation = -16458.487913 eV
Core-core repulsion = 14014.387459 eV
Total energy + Delta-G solvation = -2444.100454 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-39.38973 -36.64494 -33.66226 -32.20894 -30.69281 -28.74487 -27.45605 -25.39838
-24.02810 -22.61729 -21.46323 -20.32810 -18.98276 -16.88729 -16.09496 -15.22139
-14.73546 -14.53825 -14.36634 -14.11795 -13.49760 -13.41483 -13.05798 -12.76325
-12.35032 -12.19573 -12.02691 -11.87425 -11.49203 -11.15486 -11.05047 -10.89149
-10.73518 -10.54482 -10.24960 -10.22468 -9.85795 -9.69659 -9.24410 -8.55194
-8.51215 -7.26284 -6.03167 -3.99928 3.29487 3.37197 3.39587 4.07415
4.43937 4.72485 4.79875 4.89643 5.13538 5.23262 5.27895 5.31416
5.39602 5.43943 5.57802 5.65519 5.67238 5.73659 5.84146 6.00983
6.03788 6.14986 6.19688 6.24447 6.34352 6.36261 6.54598 6.66292
6.75180 6.89847 6.94046 7.06101 7.22526 7.64448 7.96220 8.11599
8.69697 9.05679 9.59049 11.10119
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.048415 B = 0.006148 C = 0.005716
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 578.189969 B = 4553.234020 C = 4896.974530
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 N -0.693 5.693
3 C 0.086 3.914
4 C -0.144 4.144
5 C -0.106 4.106
6 C 0.083 3.917
7 N -0.525 5.525
8 C 0.031 3.969
9 C 0.162 3.838
10 C -0.508 4.508
11 H 0.080 0.920
12 C 0.068 3.932
13 N -0.902 5.902
14 Si 0.874 3.126
15 H -0.278 1.278
16 H -0.286 1.286
17 H -0.267 1.267
18 C -0.155 4.155
19 C -0.100 4.100
20 H 0.064 0.936
21 H 0.021 0.979
22 H 0.062 0.938
23 H 0.340 0.660
24 H 0.074 0.926
25 H 0.063 0.937
26 H 0.056 0.944
27 H 0.069 0.931
28 H 0.061 0.939
29 H 0.073 0.927
30 H 0.049 0.951
31 H 0.077 0.923
32 H 0.015 0.985
33 H 0.026 0.974
34 H -0.014 1.014
35 H 0.263 0.737
36 H 0.063 0.937
37 H 0.066 0.934
38 H 0.063 0.937
39 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.609 -13.496 -0.777 19.182
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 N -0.322 5.322
3 C -0.023 4.023
4 C -0.184 4.184
5 C -0.144 4.144
6 C -0.027 4.027
7 N -0.247 5.247
8 C -0.118 4.118
9 C 0.035 3.965
10 C -0.546 4.546
11 H 0.098 0.902
12 C -0.134 4.134
13 N -0.541 5.541
14 Si 0.702 3.298
15 H -0.204 1.204
16 H -0.212 1.212
17 H -0.192 1.192
18 C -0.194 4.194
19 C -0.138 4.138
20 H 0.082 0.918
21 H 0.040 0.960
22 H 0.081 0.919
23 H 0.157 0.843
24 H 0.093 0.907
25 H 0.082 0.918
26 H 0.075 0.925
27 H 0.087 0.913
28 H 0.080 0.920
29 H 0.092 0.908
30 H 0.067 0.933
31 H 0.096 0.904
32 H 0.034 0.966
33 H 0.044 0.956
34 H 0.004 0.996
35 H 0.073 0.927
36 H 0.082 0.918
37 H 0.085 0.915
38 H 0.081 0.919
39 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -13.399 -13.280 -0.997 18.891
hybrid contribution 0.517 -0.627 -0.368 0.892
sum -12.882 -13.907 -1.365 19.005
Atomic orbital electron populations
1.22199 0.88228 1.01474 1.00342 1.60560 1.07451 1.14336 1.49818
1.21671 0.96826 0.88438 0.95390 1.22220 1.00545 0.98145 0.97463
1.21514 0.96138 0.95074 1.01699 1.21736 0.95396 0.91450 0.94086
1.62183 1.03674 1.05284 1.53586 1.22316 0.96262 0.99009 0.94192
1.20177 0.84902 0.98571 0.92831 1.21069 0.97546 0.96069 1.39960
0.90199 1.24899 0.97628 0.95243 0.95585 1.69900 1.15233 1.20640
1.48328 0.86875 0.79948 0.83050 0.79966 1.20365 1.21172 1.19165
1.22256 1.01518 0.96013 0.99642 1.21410 0.94768 0.96794 1.00862
0.91762 0.96017 0.91871 0.84264 0.90732 0.91840 0.92521 0.91267
0.91989 0.90834 0.93275 0.90435 0.96636 0.95602 0.99636 0.92716
0.91792 0.91507 0.91851 0.92169
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.24 10.50 60.07 0.63 0.87 16
2 N -0.69 -7.13 6.60 -114.01 -0.75 -7.88 16
3 C 0.09 0.99 2.47 -67.71 -0.17 0.82 16
4 C -0.14 -1.64 5.17 -26.73 -0.14 -1.78 16
5 C -0.11 -1.47 5.00 -26.73 -0.13 -1.61 16
6 C 0.08 1.39 2.22 -67.71 -0.15 1.24 16
7 N -0.53 -10.98 4.74 -236.34 -1.12 -12.10 16
8 C 0.03 0.59 8.63 60.06 0.52 1.11 16
9 C 0.16 3.94 3.23 -4.98 -0.02 3.93 16
10 C -0.51 -14.57 9.01 -34.44 -0.31 -14.88 16
11 H 0.08 2.49 7.37 -52.48 -0.39 2.10 16
12 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16
13 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16
14 Si 0.87 21.73 27.47 -169.99 -4.67 17.06 16
15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16
16 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16
17 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16
18 C -0.15 -2.40 4.51 -26.76 -0.12 -2.52 16
19 C -0.10 -1.29 5.53 -26.76 -0.15 -1.44 16
20 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16
21 H 0.02 0.18 7.44 -51.93 -0.39 -0.21 16
22 H 0.06 0.55 8.05 -51.93 -0.42 0.14 16
23 H 0.34 3.15 8.56 -39.30 -0.34 2.81 16
24 H 0.07 0.90 7.80 -51.93 -0.40 0.49 16
25 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16
26 H 0.06 0.59 7.45 -51.93 -0.39 0.20 16
27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16
28 H 0.06 0.86 6.43 -51.93 -0.33 0.52 16
29 H 0.07 1.28 8.03 -51.93 -0.42 0.87 16
30 H 0.05 0.81 6.33 -51.93 -0.33 0.48 16
31 H 0.08 1.67 6.76 -51.93 -0.35 1.32 16
32 H 0.02 0.28 6.28 -51.93 -0.33 -0.04 16
33 H 0.03 0.65 7.06 -51.93 -0.37 0.28 16
34 H -0.01 -0.34 6.36 -51.93 -0.33 -0.67 16
35 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16
36 H 0.06 0.99 6.39 -51.93 -0.33 0.66 16
37 H 0.07 1.16 6.75 -51.93 -0.35 0.81 16
38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16
39 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16
LS Contribution 291.33 15.07 4.39 4.39
Total: -1.00 -30.08 291.33 -8.25 -38.33
By element:
Atomic # 1 Polarization: 6.39 SS G_CDS: -6.73 Total: -0.35 kcal
Atomic # 6 Polarization: -12.25 SS G_CDS: -0.13 Total: -12.38 kcal
Atomic # 7 Polarization: -45.95 SS G_CDS: -1.10 Total: -47.05 kcal
Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal
Total LS contribution 4.39 Total: 4.39 kcal
Total: -30.08 -8.25 -38.33 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000085873539.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 32.562 kcal
(2) G-P(sol) polarization free energy of solvation -30.079 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.483 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.246 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.325 kcal
(6) G-S(sol) free energy of system = (1) + (5) -5.763 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds