Wall clock time and date at job start Mon Mar 30 2020 03:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46898 * 110.99961 * 2 1 4 4 C 1.53006 * 109.47006 * 84.99970 * 3 2 1 5 5 C 1.52997 * 109.47127 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47060 * 300.00449 * 5 4 3 7 7 N 1.46901 * 109.46769 * 180.02562 * 6 5 4 8 8 C 1.46900 * 111.00162 * 298.94852 * 7 6 5 9 9 C 1.46901 * 110.99952 * 174.99823 * 7 6 5 10 10 C 1.50694 * 109.47447 * 189.99860 * 9 7 6 11 11 H 1.08003 * 120.00064 * 359.97438 * 10 9 7 12 12 C 1.37877 * 120.00264 * 180.02562 * 10 9 7 13 13 N 1.31522 * 119.99918 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00092 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.46836 * 90.00062 * 14 12 10 16 16 H 1.48502 * 109.47076 * 210.00287 * 14 12 10 17 17 H 1.48500 * 109.46834 * 330.00003 * 14 12 10 18 18 C 1.52996 * 109.47328 * 60.00126 * 6 5 4 19 19 C 1.52997 * 109.47123 * 204.99951 * 3 2 1 20 20 H 1.09001 * 109.46911 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.46971 * 299.99790 * 1 2 3 22 22 H 1.08994 * 109.47376 * 59.99710 * 1 2 3 23 23 H 1.00893 * 110.99825 * 123.95672 * 2 1 3 24 24 H 1.09001 * 109.47062 * 325.00224 * 3 2 1 25 25 H 1.08998 * 109.46505 * 59.99663 * 4 3 2 26 26 H 1.08996 * 109.46884 * 300.00544 * 4 3 2 27 27 H 1.09002 * 109.47153 * 180.02562 * 5 4 3 28 28 H 1.09001 * 109.46832 * 60.00321 * 5 4 3 29 29 H 1.09001 * 109.47194 * 299.99650 * 6 5 4 30 30 H 1.09003 * 109.46730 * 60.00275 * 8 7 6 31 31 H 1.08993 * 109.47223 * 180.02562 * 8 7 6 32 32 H 1.08999 * 109.47337 * 300.00741 * 8 7 6 33 33 H 1.09000 * 109.47406 * 309.99923 * 9 7 6 34 34 H 1.09001 * 109.47083 * 69.99877 * 9 7 6 35 35 H 0.96997 * 119.99488 * 179.97438 * 13 12 10 36 36 H 1.08992 * 109.47554 * 59.99639 * 18 6 5 37 37 H 1.09004 * 109.47108 * 179.97438 * 18 6 5 38 38 H 1.09002 * 109.47045 * 60.00157 * 19 3 2 39 39 H 1.09001 * 109.47375 * 300.00082 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 2.0609 1.8926 1.4371 5 6 2.6097 3.3207 1.4372 6 6 4.0131 3.3278 0.8277 7 7 4.5403 4.6989 0.8283 8 6 3.6944 5.5886 0.0216 9 6 5.9321 4.7280 0.3595 10 6 6.5159 6.0958 0.6030 11 1 5.9130 6.8666 1.0600 12 6 7.8192 6.3635 0.2415 13 7 8.3287 7.5572 0.4546 14 14 8.8617 5.0306 -0.5496 15 1 8.7024 5.0881 -2.0249 16 1 10.2884 5.2435 -0.1969 17 1 8.4229 3.7007 -0.0557 18 6 3.9476 2.8067 -0.6093 19 6 3.3987 1.3790 -0.6096 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.8306 -0.5261 0.7813 24 1 1.3398 2.0123 -0.5894 25 1 2.7165 1.2516 2.0264 26 1 1.0612 1.8870 1.8714 27 1 2.6567 3.6918 2.4610 28 1 1.9543 3.9618 0.8476 29 1 4.6685 2.6866 1.4172 30 1 2.6851 5.6020 0.4331 31 1 4.1076 6.5970 0.0388 32 1 3.6629 5.2267 -1.0061 33 1 6.5140 3.9828 0.9020 34 1 5.9609 4.5054 -0.7072 35 1 9.2457 7.7454 0.2005 36 1 3.2923 3.4477 -1.1988 37 1 4.9474 2.8121 -1.0437 38 1 3.3521 1.0078 -1.6334 39 1 4.0545 0.7382 -0.0202 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085873539.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:53 Heat of formation + Delta-G solvation = -5.763164 kcal Electronic energy + Delta-G solvation = -16458.487913 eV Core-core repulsion = 14014.387459 eV Total energy + Delta-G solvation = -2444.100454 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.38973 -36.64494 -33.66226 -32.20894 -30.69281 -28.74487 -27.45605 -25.39838 -24.02810 -22.61729 -21.46323 -20.32810 -18.98276 -16.88729 -16.09496 -15.22139 -14.73546 -14.53825 -14.36634 -14.11795 -13.49760 -13.41483 -13.05798 -12.76325 -12.35032 -12.19573 -12.02691 -11.87425 -11.49203 -11.15486 -11.05047 -10.89149 -10.73518 -10.54482 -10.24960 -10.22468 -9.85795 -9.69659 -9.24410 -8.55194 -8.51215 -7.26284 -6.03167 -3.99928 3.29487 3.37197 3.39587 4.07415 4.43937 4.72485 4.79875 4.89643 5.13538 5.23262 5.27895 5.31416 5.39602 5.43943 5.57802 5.65519 5.67238 5.73659 5.84146 6.00983 6.03788 6.14986 6.19688 6.24447 6.34352 6.36261 6.54598 6.66292 6.75180 6.89847 6.94046 7.06101 7.22526 7.64448 7.96220 8.11599 8.69697 9.05679 9.59049 11.10119 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.048415 B = 0.006148 C = 0.005716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.189969 B = 4553.234020 C = 4896.974530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.693 5.693 3 C 0.086 3.914 4 C -0.144 4.144 5 C -0.106 4.106 6 C 0.083 3.917 7 N -0.525 5.525 8 C 0.031 3.969 9 C 0.162 3.838 10 C -0.508 4.508 11 H 0.080 0.920 12 C 0.068 3.932 13 N -0.902 5.902 14 Si 0.874 3.126 15 H -0.278 1.278 16 H -0.286 1.286 17 H -0.267 1.267 18 C -0.155 4.155 19 C -0.100 4.100 20 H 0.064 0.936 21 H 0.021 0.979 22 H 0.062 0.938 23 H 0.340 0.660 24 H 0.074 0.926 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.049 0.951 31 H 0.077 0.923 32 H 0.015 0.985 33 H 0.026 0.974 34 H -0.014 1.014 35 H 0.263 0.737 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.609 -13.496 -0.777 19.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.322 5.322 3 C -0.023 4.023 4 C -0.184 4.184 5 C -0.144 4.144 6 C -0.027 4.027 7 N -0.247 5.247 8 C -0.118 4.118 9 C 0.035 3.965 10 C -0.546 4.546 11 H 0.098 0.902 12 C -0.134 4.134 13 N -0.541 5.541 14 Si 0.702 3.298 15 H -0.204 1.204 16 H -0.212 1.212 17 H -0.192 1.192 18 C -0.194 4.194 19 C -0.138 4.138 20 H 0.082 0.918 21 H 0.040 0.960 22 H 0.081 0.919 23 H 0.157 0.843 24 H 0.093 0.907 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.034 0.966 33 H 0.044 0.956 34 H 0.004 0.996 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.399 -13.280 -0.997 18.891 hybrid contribution 0.517 -0.627 -0.368 0.892 sum -12.882 -13.907 -1.365 19.005 Atomic orbital electron populations 1.22199 0.88228 1.01474 1.00342 1.60560 1.07451 1.14336 1.49818 1.21671 0.96826 0.88438 0.95390 1.22220 1.00545 0.98145 0.97463 1.21514 0.96138 0.95074 1.01699 1.21736 0.95396 0.91450 0.94086 1.62183 1.03674 1.05284 1.53586 1.22316 0.96262 0.99009 0.94192 1.20177 0.84902 0.98571 0.92831 1.21069 0.97546 0.96069 1.39960 0.90199 1.24899 0.97628 0.95243 0.95585 1.69900 1.15233 1.20640 1.48328 0.86875 0.79948 0.83050 0.79966 1.20365 1.21172 1.19165 1.22256 1.01518 0.96013 0.99642 1.21410 0.94768 0.96794 1.00862 0.91762 0.96017 0.91871 0.84264 0.90732 0.91840 0.92521 0.91267 0.91989 0.90834 0.93275 0.90435 0.96636 0.95602 0.99636 0.92716 0.91792 0.91507 0.91851 0.92169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.50 60.07 0.63 0.87 16 2 N -0.69 -7.13 6.60 -114.01 -0.75 -7.88 16 3 C 0.09 0.99 2.47 -67.71 -0.17 0.82 16 4 C -0.14 -1.64 5.17 -26.73 -0.14 -1.78 16 5 C -0.11 -1.47 5.00 -26.73 -0.13 -1.61 16 6 C 0.08 1.39 2.22 -67.71 -0.15 1.24 16 7 N -0.53 -10.98 4.74 -236.34 -1.12 -12.10 16 8 C 0.03 0.59 8.63 60.06 0.52 1.11 16 9 C 0.16 3.94 3.23 -4.98 -0.02 3.93 16 10 C -0.51 -14.57 9.01 -34.44 -0.31 -14.88 16 11 H 0.08 2.49 7.37 -52.48 -0.39 2.10 16 12 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 13 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 14 Si 0.87 21.73 27.47 -169.99 -4.67 17.06 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 17 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 18 C -0.15 -2.40 4.51 -26.76 -0.12 -2.52 16 19 C -0.10 -1.29 5.53 -26.76 -0.15 -1.44 16 20 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 21 H 0.02 0.18 7.44 -51.93 -0.39 -0.21 16 22 H 0.06 0.55 8.05 -51.93 -0.42 0.14 16 23 H 0.34 3.15 8.56 -39.30 -0.34 2.81 16 24 H 0.07 0.90 7.80 -51.93 -0.40 0.49 16 25 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 26 H 0.06 0.59 7.45 -51.93 -0.39 0.20 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 0.86 6.43 -51.93 -0.33 0.52 16 29 H 0.07 1.28 8.03 -51.93 -0.42 0.87 16 30 H 0.05 0.81 6.33 -51.93 -0.33 0.48 16 31 H 0.08 1.67 6.76 -51.93 -0.35 1.32 16 32 H 0.02 0.28 6.28 -51.93 -0.33 -0.04 16 33 H 0.03 0.65 7.06 -51.93 -0.37 0.28 16 34 H -0.01 -0.34 6.36 -51.93 -0.33 -0.67 16 35 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 36 H 0.06 0.99 6.39 -51.93 -0.33 0.66 16 37 H 0.07 1.16 6.75 -51.93 -0.35 0.81 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 291.33 15.07 4.39 4.39 Total: -1.00 -30.08 291.33 -8.25 -38.33 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -6.73 Total: -0.35 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -0.13 Total: -12.38 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: -1.10 Total: -47.05 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.08 -8.25 -38.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085873539.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.562 kcal (2) G-P(sol) polarization free energy of solvation -30.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds